RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 ST7Q9NRC1 585 aa18.61■□□□□ 0.57
SHMT2-231ENST00000557433 FBXO2Q9UK22 296 aaPredicted RBP18.61■□□□□ 0.57
SHMT2-231ENST00000557433 AKAP11Q9UKA4 1901 aa18.6■□□□□ 0.57
SHMT2-231ENST00000557433 CCDC151A5D8V7 595 aa18.6■□□□□ 0.57
SHMT2-231ENST00000557433 B4E1Z4 1266 aa18.6■□□□□ 0.57
SHMT2-231ENST00000557433 SEMA3EO15041 775 aa18.6■□□□□ 0.57
SHMT2-231ENST00000557433 APPP05067 770 aa18.6■□□□□ 0.57
SHMT2-231ENST00000557433 ARID4AP29374 1257 aaPredicted RBP18.6■□□□□ 0.57
SHMT2-231ENST00000557433 PDE4BQ07343 736 aa18.6■□□□□ 0.57
SHMT2-231ENST00000557433 STK11IPQ8N1F8 1099 aa18.6■□□□□ 0.57
SHMT2-231ENST00000557433 TMTC2Q8N394 836 aa18.6■□□□□ 0.57
SHMT2-231ENST00000557433 SPATA20Q8TB22 786 aa18.6■□□□□ 0.57
SHMT2-231ENST00000557433 SRPRBQ9Y5M8 271 aaKnown RBP18.6■□□□□ 0.57
SHMT2-231ENST00000557433 TIAM2Q8IVF5 1701 aa18.59■□□□□ 0.57
SHMT2-231ENST00000557433 A0A1B0GTH6 734 aa18.59■□□□□ 0.57
SHMT2-231ENST00000557433 TBC1D8O95759 1140 aa18.59■□□□□ 0.57
SHMT2-231ENST00000557433 ATF3P18847 181 aa18.59■□□□□ 0.57
SHMT2-231ENST00000557433 NR1I3Q14994 352 aa18.59■□□□□ 0.57
SHMT2-231ENST00000557433 AEBP2Q6ZN18 517 aaPredicted RBP18.59■□□□□ 0.57
SHMT2-231ENST00000557433 PDILTQ8N807 584 aa18.59■□□□□ 0.57
SHMT2-231ENST00000557433 STRBPQ96SI9 672 aaKnown RBP18.59■□□□□ 0.57
SHMT2-231ENST00000557433 SLC26A6Q9BXS9 759 aa18.59■□□□□ 0.57
SHMT2-231ENST00000557433 PATL2C9JE40 543 aaKnown RBP18.59■□□□□ 0.57
SHMT2-231ENST00000557433 AKR1B15C9JRZ8 316 aaPredicted RBP18.59■□□□□ 0.57
SHMT2-231ENST00000557433 PDE6AP16499 860 aa18.59■□□□□ 0.57
SHMT2-231ENST00000557433 TXLNAP40222 546 aa18.59■□□□□ 0.57
SHMT2-231ENST00000557433 SART3Q15020 963 aaKnown RBP18.59■□□□□ 0.57
SHMT2-231ENST00000557433 HSP90AB3PQ58FF7 597 aa18.59■□□□□ 0.57
SHMT2-231ENST00000557433 LDHAL6AQ6ZMR3 332 aa18.59■□□□□ 0.57
SHMT2-231ENST00000557433 CTAGE1Q96RT6 745 aa18.59■□□□□ 0.57
SHMT2-231ENST00000557433 ZNF532Q9HCE3 1301 aa18.58■□□□□ 0.57
SHMT2-231ENST00000557433 ANKRD18BA2A2Z9 1011 aa18.58■□□□□ 0.56
SHMT2-231ENST00000557433 IFIT3O14879 490 aaKnown RBP18.58■□□□□ 0.56
SHMT2-231ENST00000557433 DEXIO95424 95 aa18.58■□□□□ 0.56
SHMT2-231ENST00000557433 PPP2R5BQ15173 497 aa18.58■□□□□ 0.56
SHMT2-231ENST00000557433 MUM1L1Q5H9M0 696 aa18.58■□□□□ 0.56
SHMT2-231ENST00000557433 DIS3L2Q8IYB7 885 aaKnown RBP18.58■□□□□ 0.56
SHMT2-231ENST00000557433 CEP112Q8N8E3 955 aa18.58■□□□□ 0.56
SHMT2-231ENST00000557433 HNRNPLLQ8WVV9 542 aaKnown RBP18.58■□□□□ 0.56
SHMT2-231ENST00000557433 AIDAQ96BJ3 306 aa18.58■□□□□ 0.56
SHMT2-231ENST00000557433 CCDC51Q96ER9 411 aa18.58■□□□□ 0.56
SHMT2-231ENST00000557433 WDR24Q96S15 920 aa18.58■□□□□ 0.56
SHMT2-231ENST00000557433 TCRBV5S4A2TA0A5A2 114 aa18.57■□□□□ 0.56
SHMT2-231ENST00000557433 TUBBP07437 444 aa18.57■□□□□ 0.56
SHMT2-231ENST00000557433 PIH1D3Q9NQM4 214 aaKnown RBP18.57■□□□□ 0.56
SHMT2-231ENST00000557433 PSD3Q9NYI0 1048 aa18.57■□□□□ 0.56
SHMT2-231ENST00000557433 ERICH4A6NGS2 130 aa18.57■□□□□ 0.56
SHMT2-231ENST00000557433 BMP15O95972 392 aa18.57■□□□□ 0.56
SHMT2-231ENST00000557433 GNAT2P19087 354 aa18.57■□□□□ 0.56
SHMT2-231ENST00000557433 FMR1Q06787 632 aaKnown RBP eCLIP18.57■□□□□ 0.56
SHMT2-231ENST00000557433 SMC1AQ14683 1233 aaKnown RBP18.57■□□□□ 0.56
SHMT2-231ENST00000557433 CHRNA2Q15822 529 aa18.57■□□□□ 0.56
SHMT2-231ENST00000557433 PI16Q6UXB8 463 aa18.57■□□□□ 0.56
SHMT2-231ENST00000557433 TOGARAM2Q6ZUX3 1019 aa18.57■□□□□ 0.56
SHMT2-231ENST00000557433 VGLL2Q8N8G2 317 aa18.57■□□□□ 0.56
SHMT2-231ENST00000557433 SERTAD1Q9UHV2 236 aa18.57■□□□□ 0.56
SHMT2-231ENST00000557433 TULP2O00295 520 aa18.56■□□□□ 0.56
SHMT2-231ENST00000557433 POLR2DO15514 142 aaKnown RBP18.56■□□□□ 0.56
SHMT2-231ENST00000557433 IDH1O75874 414 aaKnown RBP18.56■□□□□ 0.56
SHMT2-231ENST00000557433 TOB1P50616 345 aaPredicted RBP18.56■□□□□ 0.56
SHMT2-231ENST00000557433 SLC20A2Q08357 652 aa18.56■□□□□ 0.56
SHMT2-231ENST00000557433 RTN1Q16799 776 aa18.56■□□□□ 0.56
SHMT2-231ENST00000557433 SPATA1Q5VX52 437 aa18.56■□□□□ 0.56
SHMT2-231ENST00000557433 PPFIBP1Q86W92 1011 aa18.56■□□□□ 0.56
SHMT2-231ENST00000557433 PARD6BQ9BYG5 372 aa18.56■□□□□ 0.56
SHMT2-231ENST00000557433 NAPBQ9H115 298 aa18.56■□□□□ 0.56
SHMT2-231ENST00000557433 SPATA31A3Q5VYP0 1347 aa18.55■□□□□ 0.56
SHMT2-231ENST00000557433 BTBD18B2RXH4 712 aa18.55■□□□□ 0.56
SHMT2-231ENST00000557433 ACTN4O43707 911 aaKnown RBP18.55■□□□□ 0.56
SHMT2-231ENST00000557433 KIF5CO60282 957 aa18.55■□□□□ 0.56
SHMT2-231ENST00000557433 PDE8BO95263 885 aa18.55■□□□□ 0.56
SHMT2-231ENST00000557433 RXRAP19793 462 aa18.55■□□□□ 0.56
SHMT2-231ENST00000557433 ITGA6P23229 1130 aa18.55■□□□□ 0.56
SHMT2-231ENST00000557433 AKNAD1Q5T1N1 836 aa18.55■□□□□ 0.56
SHMT2-231ENST00000557433 SRGAP1Q7Z6B7 1085 aa18.55■□□□□ 0.56
SHMT2-231ENST00000557433 IFNL3Q8IZI9 196 aa18.55■□□□□ 0.56
SHMT2-231ENST00000557433 FAM89AQ96GI7 184 aa18.55■□□□□ 0.56
SHMT2-231ENST00000557433 AK7Q96M32 723 aa18.55■□□□□ 0.56
SHMT2-231ENST00000557433 CNNM1Q9NRU3 951 aa18.55■□□□□ 0.56
SHMT2-231ENST00000557433 OAS2P29728 719 aaKnown RBP18.55■□□□□ 0.56
SHMT2-231ENST00000557433 ADKP55263 362 aaKnown RBP18.55■□□□□ 0.56
SHMT2-231ENST00000557433 GOLGA8FQ08AF8 430 aa18.55■□□□□ 0.56
SHMT2-231ENST00000557433 GOLGA8DPQ0D2H9 430 aa18.55■□□□□ 0.56
SHMT2-231ENST00000557433 FILIP1LQ4L180 1135 aa18.55■□□□□ 0.56
SHMT2-231ENST00000557433 GIGYF2Q6Y7W6 1299 aaKnown RBP18.55■□□□□ 0.56
SHMT2-231ENST00000557433 TTLL11Q8NHH1 800 aa18.55■□□□□ 0.56
SHMT2-231ENST00000557433 CCDC12Q8WUD4 166 aaPredicted RBP18.55■□□□□ 0.56
SHMT2-231ENST00000557433 STAG1Q8WVM7 1258 aa18.55■□□□□ 0.56
SHMT2-231ENST00000557433 FUT8Q9BYC5 575 aa18.55■□□□□ 0.56
SHMT2-231ENST00000557433 AATFQ9NY61 560 aaKnown RBP eCLIP18.55■□□□□ 0.56
SHMT2-231ENST00000557433 ZSWIM5Q9P217 1185 aa18.55■□□□□ 0.56
SHMT2-231ENST00000557433 ITIH6Q6UXX5 1313 aa18.54■□□□□ 0.56
SHMT2-231ENST00000557433 ERICH2A1L162 156 aa18.54■□□□□ 0.56
SHMT2-231ENST00000557433 FOXN1O15353 648 aa18.54■□□□□ 0.56
SHMT2-231ENST00000557433 SEC31AO94979 1220 aaKnown RBP18.54■□□□□ 0.56
SHMT2-231ENST00000557433 FECHP22830 423 aa18.54■□□□□ 0.56
SHMT2-231ENST00000557433 CTSWP56202 376 aa18.54■□□□□ 0.56
SHMT2-231ENST00000557433 MAP3K12Q12852 859 aa18.54■□□□□ 0.56
SHMT2-231ENST00000557433 MFSD6Q6ZSS7 791 aa18.54■□□□□ 0.56
SHMT2-231ENST00000557433 FAM177A1Q8N128 213 aaPredicted RBP18.54■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms