RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 BRI3BPQ8WY22 251 aa16.61■□□□□ 0.25
SHMT2-219ENST00000555563 PTPN18Q99952 460 aa16.61■□□□□ 0.25
SHMT2-219ENST00000555563 DHX36Q9H2U1 1008 aaKnown RBP16.61■□□□□ 0.25
SHMT2-219ENST00000555563 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16.61■□□□□ 0.25
SHMT2-219ENST00000555563 PALD1Q9ULE6 856 aa16.61■□□□□ 0.25
SHMT2-219ENST00000555563 SALL3Q9BXA9 1300 aa16.61■□□□□ 0.25
SHMT2-219ENST00000555563 ATAD5Q96QE3 1844 aa16.61■□□□□ 0.25
SHMT2-219ENST00000555563 CASP8AP2Q9UKL3 1982 aa16.6■□□□□ 0.25
SHMT2-219ENST00000555563 CCL15-CCL14A0A0B4J2E2 113 aa16.6■□□□□ 0.25
SHMT2-219ENST00000555563 ALDH1A1P00352 501 aa16.6■□□□□ 0.25
SHMT2-219ENST00000555563 MX1P20591 662 aa16.6■□□□□ 0.25
SHMT2-219ENST00000555563 CCL15Q16663 113 aa16.6■□□□□ 0.25
SHMT2-219ENST00000555563 SLC4A8Q2Y0W8 1093 aa16.6■□□□□ 0.25
SHMT2-219ENST00000555563 LCORLQ8N3X6 602 aa16.6■□□□□ 0.25
SHMT2-219ENST00000555563 PI4K2BQ8TCG2 481 aa16.6■□□□□ 0.25
SHMT2-219ENST00000555563 RWDD1Q9H446 243 aaPredicted RBP16.6■□□□□ 0.25
SHMT2-219ENST00000555563 DNAJC18Q9H819 358 aa16.6■□□□□ 0.25
SHMT2-219ENST00000555563 PICK1Q9NRD5 415 aa16.6■□□□□ 0.25
SHMT2-219ENST00000555563 PI4KBQ9UBF8 816 aa16.6■□□□□ 0.25
SHMT2-219ENST00000555563 ZBTB47Q9UFB7 747 aaPredicted RBP16.6■□□□□ 0.25
SHMT2-219ENST00000555563 HERC5Q9UII4 1024 aaKnown RBP16.6■□□□□ 0.25
SHMT2-219ENST00000555563 PHIPQ8WWQ0 1821 aa16.6■□□□□ 0.25
SHMT2-219ENST00000555563 CTNND1O60716 968 aaKnown RBP16.59■□□□□ 0.25
SHMT2-219ENST00000555563 SLC34A2O95436 690 aa16.59■□□□□ 0.25
SHMT2-219ENST00000555563 IGHDP01880 384 aa16.59■□□□□ 0.25
SHMT2-219ENST00000555563 SNAPC2Q13487 334 aa16.59■□□□□ 0.25
SHMT2-219ENST00000555563 SMC5Q8IY18 1101 aa16.59■□□□□ 0.25
SHMT2-219ENST00000555563 KBTBD3Q8NAB2 608 aa16.59■□□□□ 0.25
SHMT2-219ENST00000555563 CFHR5Q9BXR6 569 aa16.59■□□□□ 0.25
SHMT2-219ENST00000555563 R3HDMLQ9H3Y0 253 aa16.59■□□□□ 0.25
SHMT2-219ENST00000555563 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.59■□□□□ 0.25
SHMT2-219ENST00000555563 ERC2O15083 957 aa16.58■□□□□ 0.24
SHMT2-219ENST00000555563 GLRX3O76003 335 aaKnown RBP16.58■□□□□ 0.24
SHMT2-219ENST00000555563 MBD4O95243 580 aa16.58■□□□□ 0.24
SHMT2-219ENST00000555563 HLA-DOAP06340 250 aa16.58■□□□□ 0.24
SHMT2-219ENST00000555563 CETPP11597 493 aa16.58■□□□□ 0.24
SHMT2-219ENST00000555563 PTPRAP18433 802 aa16.58■□□□□ 0.24
SHMT2-219ENST00000555563 UBE3CQ15386 1083 aa16.58■□□□□ 0.24
SHMT2-219ENST00000555563 CRNKL1Q9BZJ0 848 aaKnown RBP16.58■□□□□ 0.24
SHMT2-219ENST00000555563 MCOLN1Q9GZU1 580 aa16.58■□□□□ 0.24
SHMT2-219ENST00000555563 ARMT1Q9H993 441 aa16.58■□□□□ 0.24
SHMT2-219ENST00000555563 KCNH4Q9UQ05 1017 aa16.58■□□□□ 0.24
SHMT2-219ENST00000555563 PTPRFP10586 1907 aa16.57■□□□□ 0.24
SHMT2-219ENST00000555563 RRP1BQ14684 758 aaKnown RBP16.57■□□□□ 0.24
SHMT2-219ENST00000555563 OTUD7BQ6GQQ9 843 aa16.57■□□□□ 0.24
SHMT2-219ENST00000555563 ZSCAN25Q6NSZ9 544 aa16.57■□□□□ 0.24
SHMT2-219ENST00000555563 CCDC84Q86UT8 332 aaPredicted RBP16.57■□□□□ 0.24
SHMT2-219ENST00000555563 FAM43AQ8N2R8 423 aa16.57■□□□□ 0.24
SHMT2-219ENST00000555563 CRACR2BQ8N4Y2 399 aaPredicted RBP16.57■□□□□ 0.24
SHMT2-219ENST00000555563 SDR42E1Q8WUS8 393 aa16.57■□□□□ 0.24
SHMT2-219ENST00000555563 LNPKQ9C0E8 428 aa16.57■□□□□ 0.24
SHMT2-219ENST00000555563 GPR25O00155 361 aa16.56■□□□□ 0.24
SHMT2-219ENST00000555563 CAP2P40123 477 aa16.56■□□□□ 0.24
SHMT2-219ENST00000555563 CRHR2Q13324 411 aa16.56■□□□□ 0.24
SHMT2-219ENST00000555563 NOM1Q5C9Z4 860 aaKnown RBP16.56■□□□□ 0.24
SHMT2-219ENST00000555563 METTL16Q86W50 562 aaKnown RBP16.56■□□□□ 0.24
SHMT2-219ENST00000555563 TRIM34Q9BYJ4 488 aa16.56■□□□□ 0.24
SHMT2-219ENST00000555563 ZHX2Q9Y6X8 837 aa16.56■□□□□ 0.24
SHMT2-219ENST00000555563 BTBD19C9JJ37 291 aa16.55■□□□□ 0.24
SHMT2-219ENST00000555563 PRKAB2O43741 272 aa16.55■□□□□ 0.24
SHMT2-219ENST00000555563 DGKZQ13574 1117 aa16.55■□□□□ 0.24
SHMT2-219ENST00000555563 B4GALNT3Q6L9W6 998 aa16.55■□□□□ 0.24
SHMT2-219ENST00000555563 FOXP4Q8IVH2 680 aaPredicted RBP16.55■□□□□ 0.24
SHMT2-219ENST00000555563 ZNF296Q8WUU4 475 aaPredicted RBP16.55■□□□□ 0.24
SHMT2-219ENST00000555563 PUS7LQ9H0K6 701 aaKnown RBP16.55■□□□□ 0.24
SHMT2-219ENST00000555563 EHD4Q9H223 541 aa16.55■□□□□ 0.24
SHMT2-219ENST00000555563 DCP1AQ9NPI6 582 aaPredicted RBP16.55■□□□□ 0.24
SHMT2-219ENST00000555563 PDE1AP54750 535 aa16.54■□□□□ 0.24
SHMT2-219ENST00000555563 EVX2Q03828 476 aa16.54■□□□□ 0.24
SHMT2-219ENST00000555563 MOGSQ13724 837 aa16.54■□□□□ 0.24
SHMT2-219ENST00000555563 TAF1CQ15572 869 aaPredicted RBP16.54■□□□□ 0.24
SHMT2-219ENST00000555563 SHROOM1Q2M3G4 852 aaPredicted RBP16.54■□□□□ 0.24
SHMT2-219ENST00000555563 APPBP2Q92624 585 aa16.54■□□□□ 0.24
SHMT2-219ENST00000555563 MCM9Q9NXL9 1143 aa16.54■□□□□ 0.24
SHMT2-219ENST00000555563 STAP2Q9UGK3 403 aa16.54■□□□□ 0.24
SHMT2-219ENST00000555563 SERPINB13Q9UIV8 391 aa16.54■□□□□ 0.24
SHMT2-219ENST00000555563 AFG3L2Q9Y4W6 797 aa16.54■□□□□ 0.24
SHMT2-219ENST00000555563 BAZ2AQ9UIF9 1905 aaKnown RBP16.53■□□□□ 0.24
SHMT2-219ENST00000555563 A0A0G2JLL6 359 aaPredicted RBP16.53■□□□□ 0.24
SHMT2-219ENST00000555563 CXCL11O14625 94 aa16.53■□□□□ 0.24
SHMT2-219ENST00000555563 RNF113AO15541 343 aaKnown RBP16.53■□□□□ 0.24
SHMT2-219ENST00000555563 GDF11O95390 407 aa16.53■□□□□ 0.24
SHMT2-219ENST00000555563 PLCD1P51178 756 aa16.53■□□□□ 0.24
SHMT2-219ENST00000555563 NUCB1Q02818 461 aa16.53■□□□□ 0.24
SHMT2-219ENST00000555563 PRRT2Q7Z6L0 340 aaPredicted RBP16.53■□□□□ 0.24
SHMT2-219ENST00000555563 TTC6Q86TZ1 520 aa16.53■□□□□ 0.24
SHMT2-219ENST00000555563 CHD1LQ86WJ1 897 aa16.53■□□□□ 0.24
SHMT2-219ENST00000555563 FSD1Q9BTV5 496 aa16.53■□□□□ 0.24
SHMT2-219ENST00000555563 ZCCHC17Q9NP64 241 aaKnown RBP16.53■□□□□ 0.24
SHMT2-219ENST00000555563 LOC285556D6RIA3 1793 aa16.53■□□□□ 0.24
SHMT2-219ENST00000555563 TRIM75PA6NK02 468 aa16.52■□□□□ 0.24
SHMT2-219ENST00000555563 POLR3DP05423 398 aaPredicted RBP16.52■□□□□ 0.24
SHMT2-219ENST00000555563 ZFYP08048 801 aaPredicted RBP16.52■□□□□ 0.24
SHMT2-219ENST00000555563 CYP2D6P10635 497 aa16.52■□□□□ 0.24
SHMT2-219ENST00000555563 JAG1P78504 1218 aa16.52■□□□□ 0.24
SHMT2-219ENST00000555563 ANKRD23Q86SG2 305 aa16.52■□□□□ 0.24
SHMT2-219ENST00000555563 OSBP2Q969R2 916 aa16.52■□□□□ 0.24
SHMT2-219ENST00000555563 ATP8A2Q9NTI2 1148 aa16.52■□□□□ 0.24
SHMT2-219ENST00000555563 M0R2C6 588 aa16.51■□□□□ 0.23
SHMT2-219ENST00000555563 FKTNO75072 461 aa16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms