RNA–Protein interactions for RNA: ENST00000555022.5

SYNE2-217, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 3,396 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-217ENST00000555022 CDC23Q9UJX2 597 aa10.1□□□□□ -0.79
SYNE2-217ENST00000555022 PCDHB6Q9Y5E3 794 aa10.1□□□□□ -0.79
SYNE2-217ENST00000555022 XRN1Q8IZH2 1706 aaKnown RBP10.1□□□□□ -0.79
SYNE2-217ENST00000555022 PALLDQ8WX93 1383 aa10.1□□□□□ -0.79
SYNE2-217ENST00000555022 N4BP3O15049 544 aa10.1□□□□□ -0.79
SYNE2-217ENST00000555022 RNF113AO15541 343 aaKnown RBP10.1□□□□□ -0.79
SYNE2-217ENST00000555022 YEATS4O95619 227 aa10.1□□□□□ -0.79
SYNE2-217ENST00000555022 CSB-PGBD3P0DP91 1061 aa10.1□□□□□ -0.79
SYNE2-217ENST00000555022 CXCR5P32302 372 aa10.1□□□□□ -0.79
SYNE2-217ENST00000555022 GGCXP38435 758 aa10.1□□□□□ -0.79
SYNE2-217ENST00000555022 TSGA10IPQ3SY00 556 aa10.1□□□□□ -0.79
SYNE2-217ENST00000555022 SYNE4Q8N205 404 aa10.1□□□□□ -0.79
SYNE2-217ENST00000555022 SMCR8Q8TEV9 937 aaPredicted RBP10.1□□□□□ -0.79
SYNE2-217ENST00000555022 KAT2BQ92831 832 aa10.1□□□□□ -0.79
SYNE2-217ENST00000555022 POLR3EQ9NVU0 708 aa10.1□□□□□ -0.79
SYNE2-217ENST00000555022 TMEM131LA2VDJ0 1609 aa10.1□□□□□ -0.79
SYNE2-217ENST00000555022 TUBGCP6Q96RT7 1819 aa10.1□□□□□ -0.79
SYNE2-217ENST00000555022 PLEKHG3A1L390 1219 aa10.09□□□□□ -0.79
SYNE2-217ENST00000555022 PATL2C9JE40 543 aaKnown RBP10.09□□□□□ -0.79
SYNE2-217ENST00000555022 CD44P16070 742 aaKnown RBP10.09□□□□□ -0.79
SYNE2-217ENST00000555022 SLC20A2Q08357 652 aa10.09□□□□□ -0.79
SYNE2-217ENST00000555022 SH2D3CQ8N5H7 860 aa10.09□□□□□ -0.79
SYNE2-217ENST00000555022 CABP5Q9NP86 173 aa10.09□□□□□ -0.79
SYNE2-217ENST00000555022 A2ML1A8K2U0 1454 aa10.09□□□□□ -0.79
SYNE2-217ENST00000555022 HMGB1P09429 215 aaKnown RBP10.09□□□□□ -0.79
SYNE2-217ENST00000555022 IARSP41252 1262 aaKnown RBP10.09□□□□□ -0.79
SYNE2-217ENST00000555022 ENOX2Q16206 610 aaKnown RBP10.09□□□□□ -0.79
SYNE2-217ENST00000555022 RRP36Q96EU6 259 aaKnown RBP10.09□□□□□ -0.79
SYNE2-217ENST00000555022 MMS19Q96T76 1030 aa10.09□□□□□ -0.79
SYNE2-217ENST00000555022 CRACR2AQ9BSW2 395 aa10.09□□□□□ -0.79
SYNE2-217ENST00000555022 GNL3LQ9NVN8 582 aaKnown RBP10.09□□□□□ -0.79
SYNE2-217ENST00000555022 IQSEC3Q9UPP2 1182 aaPredicted RBP10.09□□□□□ -0.79
SYNE2-217ENST00000555022 PLEKHG2Q9H7P9 1386 aa10.09□□□□□ -0.79
SYNE2-217ENST00000555022 IKBKBO14920 756 aa10.09□□□□□ -0.79
SYNE2-217ENST00000555022 IVLP07476 585 aa10.09□□□□□ -0.79
SYNE2-217ENST00000555022 MAGEA9P43362 315 aa10.09□□□□□ -0.79
SYNE2-217ENST00000555022 CYP27A1Q02318 531 aa10.09□□□□□ -0.79
SYNE2-217ENST00000555022 RNF187Q5TA31 235 aaPredicted RBP10.09□□□□□ -0.79
SYNE2-217ENST00000555022 TTLL7Q6ZT98 887 aa10.09□□□□□ -0.79
SYNE2-217ENST00000555022 TBC1D10CQ8IV04 446 aa10.09□□□□□ -0.79
SYNE2-217ENST00000555022 UBXN6Q9BZV1 441 aa10.09□□□□□ -0.79
SYNE2-217ENST00000555022 KAT14Q9H8E8 782 aa10.09□□□□□ -0.79
SYNE2-217ENST00000555022 L1RE1Q9UN81 338 aa10.09□□□□□ -0.79
SYNE2-217ENST00000555022 SMIM22K7EJ46 135 aa10.08□□□□□ -0.8
SYNE2-217ENST00000555022 MYO1FO00160 1098 aa10.08□□□□□ -0.8
SYNE2-217ENST00000555022 BRD3Q15059 726 aa10.08□□□□□ -0.8
SYNE2-217ENST00000555022 TMEM67Q5HYA8 995 aa10.08□□□□□ -0.8
SYNE2-217ENST00000555022 DIS3L2Q8IYB7 885 aaKnown RBP10.08□□□□□ -0.8
SYNE2-217ENST00000555022 ANKRD13CQ8N6S4 541 aa10.08□□□□□ -0.8
SYNE2-217ENST00000555022 PROCA1Q8NCQ7 364 aaPredicted RBP10.08□□□□□ -0.8
SYNE2-217ENST00000555022 NAPGQ99747 312 aaPredicted RBP10.08□□□□□ -0.8
SYNE2-217ENST00000555022 EFCC1Q9HA90 598 aa10.08□□□□□ -0.8
SYNE2-217ENST00000555022 JADE2Q9NQC1 790 aa10.08□□□□□ -0.8
SYNE2-217ENST00000555022 DDX21Q9NR30 783 aaKnown RBP eCLIP10.08□□□□□ -0.8
SYNE2-217ENST00000555022 MLH3Q9UHC1 1453 aa10.08□□□□□ -0.8
SYNE2-217ENST00000555022 BAZ2BQ9UIF8 2168 aaKnown RBP10.08□□□□□ -0.8
SYNE2-217ENST00000555022 SALL1Q9NSC2 1324 aa10.08□□□□□ -0.8
SYNE2-217ENST00000555022 TULP1O00294 542 aaPredicted RBP10.08□□□□□ -0.8
SYNE2-217ENST00000555022 GPAA1O43292 621 aa10.08□□□□□ -0.8
SYNE2-217ENST00000555022 STX10O60499 249 aa10.08□□□□□ -0.8
SYNE2-217ENST00000555022 PDCLQ13371 301 aa10.08□□□□□ -0.8
SYNE2-217ENST00000555022 ZMYM1Q5SVZ6 1142 aa10.08□□□□□ -0.8
SYNE2-217ENST00000555022 SND1Q7KZF4 910 aaKnown RBP eCLIP10.08□□□□□ -0.8
SYNE2-217ENST00000555022 RASSF8Q8NHQ8 419 aa10.08□□□□□ -0.8
SYNE2-217ENST00000555022 DUSP10Q9Y6W6 482 aa10.08□□□□□ -0.8
SYNE2-217ENST00000555022 ATP1A1P05023 1023 aaKnown RBP10.08□□□□□ -0.8
SYNE2-217ENST00000555022 PDIA6Q15084 440 aa10.08□□□□□ -0.8
SYNE2-217ENST00000555022 TTC5Q8N0Z6 440 aa10.08□□□□□ -0.8
SYNE2-217ENST00000555022 JMYQ8N9B5 988 aa10.08□□□□□ -0.8
SYNE2-217ENST00000555022 AIDAQ96BJ3 306 aa10.08□□□□□ -0.8
SYNE2-217ENST00000555022 CSRNP2Q9H175 543 aa10.08□□□□□ -0.8
SYNE2-217ENST00000555022 MAP2K7O14733 419 aa10.07□□□□□ -0.8
SYNE2-217ENST00000555022 RANBP6O60518 1105 aaKnown RBP10.07□□□□□ -0.8
SYNE2-217ENST00000555022 KRT9P35527 623 aa10.07□□□□□ -0.8
SYNE2-217ENST00000555022 ERVK-24P63145 666 aa10.07□□□□□ -0.8
SYNE2-217ENST00000555022 DPYDQ12882 1025 aa10.07□□□□□ -0.8
SYNE2-217ENST00000555022 ZNF174Q15697 407 aa10.07□□□□□ -0.8
SYNE2-217ENST00000555022 TOM1L2Q6ZVM7 507 aa10.07□□□□□ -0.8
SYNE2-217ENST00000555022 KRI1Q8N9T8 703 aaKnown RBP10.07□□□□□ -0.8
SYNE2-217ENST00000555022 NCOA7Q8NI08 942 aa10.07□□□□□ -0.8
SYNE2-217ENST00000555022 BCAS4Q8TDM0 211 aa10.07□□□□□ -0.8
SYNE2-217ENST00000555022 ZNF274Q96GC6 653 aaPredicted RBP10.07□□□□□ -0.8
SYNE2-217ENST00000555022 JPH2Q9BR39 696 aaPredicted RBP10.07□□□□□ -0.8
SYNE2-217ENST00000555022 CAPN7Q9Y6W3 813 aa10.07□□□□□ -0.8
SYNE2-217ENST00000555022 SYNRGQ9UMZ2 1314 aa10.07□□□□□ -0.8
SYNE2-217ENST00000555022 ADGRL3Q9HAR2 1447 aa10.07□□□□□ -0.8
SYNE2-217ENST00000555022 IFIT3O14879 490 aaKnown RBP10.07□□□□□ -0.8
SYNE2-217ENST00000555022 ERLIN2O94905 339 aa10.07□□□□□ -0.8
SYNE2-217ENST00000555022 GPTP24298 496 aa10.07□□□□□ -0.8
SYNE2-217ENST00000555022 RFX5P48382 616 aaPredicted RBP10.07□□□□□ -0.8
SYNE2-217ENST00000555022 GNGT1P63211 74 aa10.07□□□□□ -0.8
SYNE2-217ENST00000555022 ACTN3Q08043 901 aaPredicted RBP10.07□□□□□ -0.8
SYNE2-217ENST00000555022 RRAGBQ5VZM2 374 aa10.07□□□□□ -0.8
SYNE2-217ENST00000555022 BRAPQ7Z569 592 aa10.07□□□□□ -0.8
SYNE2-217ENST00000555022 KIAA1328Q86T90 577 aa10.07□□□□□ -0.8
SYNE2-217ENST00000555022 CEP112Q8N8E3 955 aa10.07□□□□□ -0.8
SYNE2-217ENST00000555022 ANKRD24Q8TF21 1146 aa10.07□□□□□ -0.8
SYNE2-217ENST00000555022 HDAC7Q8WUI4 952 aa10.07□□□□□ -0.8
SYNE2-217ENST00000555022 VPS54Q9P1Q0 977 aa10.07□□□□□ -0.8
SYNE2-217ENST00000555022 TRIM49BA6NDI0 452 aa10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms