RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 CCSER2Q9H7U1 834 aa5.48□□□□□ -1.53
LIMA1-208ENST00000551691 NCOA3Q9Y6Q9 1424 aa5.48□□□□□ -1.53
LIMA1-208ENST00000551691 A6NHS1 94 aa5.47□□□□□ -1.53
LIMA1-208ENST00000551691 FSCN2O14926 492 aa5.47□□□□□ -1.53
LIMA1-208ENST00000551691 ADAM11O75078 769 aa5.47□□□□□ -1.53
LIMA1-208ENST00000551691 ADAMTS4O75173 837 aa5.47□□□□□ -1.53
LIMA1-208ENST00000551691 PRPF40AO75400 957 aaKnown RBP5.47□□□□□ -1.53
LIMA1-208ENST00000551691 SMNDC1O75940 238 aaKnown RBP eCLIP5.47□□□□□ -1.53
LIMA1-208ENST00000551691 TRIM37O94972 964 aa5.47□□□□□ -1.53
LIMA1-208ENST00000551691 TSPY4P0CV99 314 aa5.47□□□□□ -1.53
LIMA1-208ENST00000551691 TSPY10P0CW01 314 aa5.47□□□□□ -1.53
LIMA1-208ENST00000551691 EIF1AXP47813 144 aaKnown RBP5.47□□□□□ -1.53
LIMA1-208ENST00000551691 DUOXA2Q1HG44 320 aa5.47□□□□□ -1.53
LIMA1-208ENST00000551691 KIAA1211Q6ZU35 1233 aa5.47□□□□□ -1.53
LIMA1-208ENST00000551691 NCAPG2Q86XI2 1143 aa5.47□□□□□ -1.53
LIMA1-208ENST00000551691 TRIM42Q8IWZ5 723 aa5.47□□□□□ -1.53
LIMA1-208ENST00000551691 FAM177A1Q8N128 213 aaPredicted RBP5.47□□□□□ -1.53
LIMA1-208ENST00000551691 KLHDC7BQ96G42 594 aa5.47□□□□□ -1.53
LIMA1-208ENST00000551691 TMEM63CQ9P1W3 806 aa5.47□□□□□ -1.53
LIMA1-208ENST00000551691 STIM2Q9P246 746 aa5.47□□□□□ -1.53
LIMA1-208ENST00000551691 MROH1Q8NDA8 1641 aa5.47□□□□□ -1.53
LIMA1-208ENST00000551691 EFCAB6Q5THR3 1501 aa5.47□□□□□ -1.53
LIMA1-208ENST00000551691 PTCH1Q13635 1447 aa5.47□□□□□ -1.53
LIMA1-208ENST00000551691 CEP152O94986 1710 aa5.46□□□□□ -1.54
LIMA1-208ENST00000551691 TM4SF5O14894 197 aa5.46□□□□□ -1.54
LIMA1-208ENST00000551691 TREHO43280 583 aa5.46□□□□□ -1.54
LIMA1-208ENST00000551691 NLRP12P59046 1061 aa5.46□□□□□ -1.54
LIMA1-208ENST00000551691 EHHADHQ08426 723 aa5.46□□□□□ -1.54
LIMA1-208ENST00000551691 C9orf131Q5VYM1 1079 aa5.46□□□□□ -1.54
LIMA1-208ENST00000551691 MAP4K3Q8IVH8 894 aa5.46□□□□□ -1.54
LIMA1-208ENST00000551691 HHIPQ96QV1 700 aa5.46□□□□□ -1.54
LIMA1-208ENST00000551691 DUSP9Q99956 384 aaKnown RBP5.46□□□□□ -1.54
LIMA1-208ENST00000551691 C7orf69Q9H7B7 122 aa5.46□□□□□ -1.54
LIMA1-208ENST00000551691 SRA1Q9HD15 236 aaKnown RBP5.46□□□□□ -1.54
LIMA1-208ENST00000551691 ABI2Q9NYB9 513 aaPredicted RBP5.46□□□□□ -1.54
LIMA1-208ENST00000551691 PARP2Q9UGN5 583 aa5.46□□□□□ -1.54
LIMA1-208ENST00000551691 OAS3Q9Y6K5 1087 aaKnown RBP5.46□□□□□ -1.54
LIMA1-208ENST00000551691 PLEKHG1Q9ULL1 1385 aa5.45□□□□□ -1.54
LIMA1-208ENST00000551691 DHX15O43143 795 aaKnown RBP5.45□□□□□ -1.54
LIMA1-208ENST00000551691 ZBTB7AO95365 584 aa5.45□□□□□ -1.54
LIMA1-208ENST00000551691 USP5P45974 858 aa5.45□□□□□ -1.54
LIMA1-208ENST00000551691 FMR1Q06787 632 aaKnown RBP eCLIP5.45□□□□□ -1.54
LIMA1-208ENST00000551691 VPS72Q15906 364 aa5.45□□□□□ -1.54
LIMA1-208ENST00000551691 HGSNATQ68CP4 663 aa5.45□□□□□ -1.54
LIMA1-208ENST00000551691 ZDHHC13Q8IUH4 622 aa5.45□□□□□ -1.54
LIMA1-208ENST00000551691 SLC7A3Q8WY07 619 aa5.45□□□□□ -1.54
LIMA1-208ENST00000551691 NUDT16Q96DE0 195 aaKnown RBP5.45□□□□□ -1.54
LIMA1-208ENST00000551691 FAM161BQ96MY7 647 aa5.45□□□□□ -1.54
LIMA1-208ENST00000551691 POP1Q99575 1024 aaKnown RBP5.45□□□□□ -1.54
LIMA1-208ENST00000551691 SYT17Q9BSW7 474 aa5.45□□□□□ -1.54
LIMA1-208ENST00000551691 PBX4Q9BYU1 374 aa5.45□□□□□ -1.54
LIMA1-208ENST00000551691 TANGO6Q9C0B7 1094 aa5.45□□□□□ -1.54
LIMA1-208ENST00000551691 MUC3BQ9H195 1237 aa5.45□□□□□ -1.54
LIMA1-208ENST00000551691 CNTN3Q9P232 1028 aa5.45□□□□□ -1.54
LIMA1-208ENST00000551691 ADAMTS13Q76LX8 1427 aa5.45□□□□□ -1.54
LIMA1-208ENST00000551691 PCNTO95613 3336 aa5.45□□□□□ -1.54
LIMA1-208ENST00000551691 NINLQ9Y2I6 1382 aa5.44□□□□□ -1.54
LIMA1-208ENST00000551691 COBLO75128 1261 aa5.44□□□□□ -1.54
LIMA1-208ENST00000551691 NEFLP07196 543 aa5.44□□□□□ -1.54
LIMA1-208ENST00000551691 NPR3P17342 541 aa5.44□□□□□ -1.54
LIMA1-208ENST00000551691 DNM1Q05193 864 aaKnown RBP5.44□□□□□ -1.54
LIMA1-208ENST00000551691 NFIAQ12857 509 aa5.44□□□□□ -1.54
LIMA1-208ENST00000551691 ALG1LQ6GMV1 187 aa5.44□□□□□ -1.54
LIMA1-208ENST00000551691 FAM117BQ6P1L5 589 aa5.44□□□□□ -1.54
LIMA1-208ENST00000551691 CEP120Q8N960 986 aa5.44□□□□□ -1.54
LIMA1-208ENST00000551691 RNF34Q969K3 372 aa5.44□□□□□ -1.54
LIMA1-208ENST00000551691 CEP41Q9BYV8 373 aa5.44□□□□□ -1.54
LIMA1-208ENST00000551691 KCNF1Q9H3M0 494 aa5.44□□□□□ -1.54
LIMA1-208ENST00000551691 ELP3Q9H9T3 547 aa5.44□□□□□ -1.54
LIMA1-208ENST00000551691 ADGRL3Q9HAR2 1447 aa5.44□□□□□ -1.54
LIMA1-208ENST00000551691 CCDC87Q9NVE4 849 aa5.44□□□□□ -1.54
LIMA1-208ENST00000551691 RIMS2Q9UQ26 1411 aa5.44□□□□□ -1.54
LIMA1-208ENST00000551691 FNDC3AQ9Y2H6 1198 aaKnown RBP5.44□□□□□ -1.54
LIMA1-208ENST00000551691 UNC13BO14795 1591 aa5.43□□□□□ -1.54
LIMA1-208ENST00000551691 CASKIN1Q8WXD9 1431 aa5.43□□□□□ -1.54
LIMA1-208ENST00000551691 PNMA6FA0A0J9YX94 578 aa5.43□□□□□ -1.54
LIMA1-208ENST00000551691 FAM83GA6ND36 823 aa5.43□□□□□ -1.54
LIMA1-208ENST00000551691 SMARCA5O60264 1052 aaPredicted RBP5.43□□□□□ -1.54
LIMA1-208ENST00000551691 KIF4AO95239 1232 aa5.43□□□□□ -1.54
LIMA1-208ENST00000551691 HSPA6P17066 643 aa5.43□□□□□ -1.54
LIMA1-208ENST00000551691 PTPRAP18433 802 aa5.43□□□□□ -1.54
LIMA1-208ENST00000551691 ZNF76P36508 570 aa5.43□□□□□ -1.54
LIMA1-208ENST00000551691 PREPP48147 710 aa5.43□□□□□ -1.54
LIMA1-208ENST00000551691 IRAK1P51617 712 aa5.43□□□□□ -1.54
LIMA1-208ENST00000551691 PRELPP51888 382 aa5.43□□□□□ -1.54
LIMA1-208ENST00000551691 GP2P55259 537 aaKnown RBP5.43□□□□□ -1.54
LIMA1-208ENST00000551691 HDLBPQ00341 1268 aaKnown RBP5.43□□□□□ -1.54
LIMA1-208ENST00000551691 NBPF8Q3BBV2 869 aa5.43□□□□□ -1.54
LIMA1-208ENST00000551691 ZNF438Q7Z4V0 828 aa5.43□□□□□ -1.54
LIMA1-208ENST00000551691 NT5DC4Q86YG4 428 aa5.43□□□□□ -1.54
LIMA1-208ENST00000551691 C1orf127Q8N9H9 656 aa5.43□□□□□ -1.54
LIMA1-208ENST00000551691 FAM46AQ96IP4 442 aaKnown RBP5.43□□□□□ -1.54
LIMA1-208ENST00000551691 KRTAP9-9Q9BYP9 154 aa5.43□□□□□ -1.54
LIMA1-208ENST00000551691 KRTAP9-4Q9BYQ2 154 aa5.43□□□□□ -1.54
LIMA1-208ENST00000551691 NIF3L1Q9GZT8 377 aa5.43□□□□□ -1.54
LIMA1-208ENST00000551691 GOLGA2P5Q9HBQ8 144 aa5.43□□□□□ -1.54
LIMA1-208ENST00000551691 CAPN10Q9HC96 672 aa5.43□□□□□ -1.54
LIMA1-208ENST00000551691 RRP7BPQ9NSQ0 103 aa5.43□□□□□ -1.54
LIMA1-208ENST00000551691 FAM13BQ9NYF5 915 aa5.43□□□□□ -1.54
LIMA1-208ENST00000551691 MYOM2P54296 1465 aa5.43□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms