RNA–Protein interactions for RNA: ENST00000542790.1

VPS33A-207, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 1,133 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-207ENST00000542790 MIGA2Q7L4E1 593 aa14.97□□□□□ -0.01
VPS33A-207ENST00000542790 SH3BP5LQ7L8J4 393 aa14.97□□□□□ -0.01
VPS33A-207ENST00000542790 PLEKHM2Q8IWE5 1019 aa14.97□□□□□ -0.01
VPS33A-207ENST00000542790 SLC10A4Q96EP9 437 aa14.97□□□□□ -0.01
VPS33A-207ENST00000542790 RIOK1Q9BRS2 568 aaKnown RBP14.97□□□□□ -0.01
VPS33A-207ENST00000542790 ZNF341Q9BYN7 854 aa14.97□□□□□ -0.01
VPS33A-207ENST00000542790 DHX36Q9H2U1 1008 aaKnown RBP14.97□□□□□ -0.01
VPS33A-207ENST00000542790 OSBPL3Q9H4L5 887 aa14.97□□□□□ -0.01
VPS33A-207ENST00000542790 SSC5DA1L4H1 1573 aa14.97□□□□□ -0.01
VPS33A-207ENST00000542790 AKAP11Q9UKA4 1901 aa14.96□□□□□ -0.01
VPS33A-207ENST00000542790 DDTLA6NHG4 134 aaPredicted RBP14.96□□□□□ -0.01
VPS33A-207ENST00000542790 RNF113AO15541 343 aaKnown RBP14.96□□□□□ -0.01
VPS33A-207ENST00000542790 USP5P45974 858 aa14.96□□□□□ -0.01
VPS33A-207ENST00000542790 MAP3K9P80192 1104 aa14.96□□□□□ -0.01
VPS33A-207ENST00000542790 MAPKAPK5Q8IW41 473 aa14.96□□□□□ -0.01
VPS33A-207ENST00000542790 EVI5LQ96CN4 794 aa14.96□□□□□ -0.01
VPS33A-207ENST00000542790 CRNKL1Q9BZJ0 848 aaKnown RBP14.96□□□□□ -0.01
VPS33A-207ENST00000542790 OCEL1Q9H607 264 aa14.96□□□□□ -0.01
VPS33A-207ENST00000542790 ATRNL1Q5VV63 1379 aa14.96□□□□□ -0.02
VPS33A-207ENST00000542790 PAPPA2Q9BXP8 1791 aa14.96□□□□□ -0.02
VPS33A-207ENST00000542790 FLT1P17948 1338 aa14.95□□□□□ -0.02
VPS33A-207ENST00000542790 FAM155AB1AL88 458 aaPredicted RBP14.95□□□□□ -0.02
VPS33A-207ENST00000542790 SLC10A3P09131 477 aa14.95□□□□□ -0.02
VPS33A-207ENST00000542790 MAP3K10Q02779 954 aa14.95□□□□□ -0.02
VPS33A-207ENST00000542790 PDCD7Q8N8D1 485 aaKnown RBP14.95□□□□□ -0.02
VPS33A-207ENST00000542790 DDX55Q8NHQ9 600 aaKnown RBP eCLIP14.95□□□□□ -0.02
VPS33A-207ENST00000542790 FSD1Q9BTV5 496 aa14.95□□□□□ -0.02
VPS33A-207ENST00000542790 CSADQ9Y600 493 aa14.95□□□□□ -0.02
VPS33A-207ENST00000542790 TBC1D12O60347 775 aa14.94□□□□□ -0.02
VPS33A-207ENST00000542790 AOC2O75106 756 aa14.94□□□□□ -0.02
VPS33A-207ENST00000542790 MBD4O95243 580 aa14.94□□□□□ -0.02
VPS33A-207ENST00000542790 SLFNL1Q499Z3 407 aa14.94□□□□□ -0.02
VPS33A-207ENST00000542790 PPP1R3FQ6ZSY5 799 aaPredicted RBP14.94□□□□□ -0.02
VPS33A-207ENST00000542790 CENPQQ7L2Z9 268 aaPredicted RBP14.94□□□□□ -0.02
VPS33A-207ENST00000542790 TICAM2Q86XR7 235 aa14.94□□□□□ -0.02
VPS33A-207ENST00000542790 RASAL3Q86YV0 1011 aa14.94□□□□□ -0.02
VPS33A-207ENST00000542790 LCORLQ8N3X6 602 aa14.94□□□□□ -0.02
VPS33A-207ENST00000542790 APPBP2Q92624 585 aa14.94□□□□□ -0.02
VPS33A-207ENST00000542790 AIDAQ96BJ3 306 aa14.94□□□□□ -0.02
VPS33A-207ENST00000542790 CLMNQ96JQ2 1002 aa14.94□□□□□ -0.02
VPS33A-207ENST00000542790 WRNIP1Q96S55 665 aa14.94□□□□□ -0.02
VPS33A-207ENST00000542790 PI4KBQ9UBF8 816 aa14.94□□□□□ -0.02
VPS33A-207ENST00000542790 ZNF112Q9UJU3 913 aa14.94□□□□□ -0.02
VPS33A-207ENST00000542790 CHGBP05060 677 aa14.93□□□□□ -0.02
VPS33A-207ENST00000542790 MAP2K1Q02750 393 aaPredicted RBP14.93□□□□□ -0.02
VPS33A-207ENST00000542790 VGLL4Q14135 290 aa14.93□□□□□ -0.02
VPS33A-207ENST00000542790 FOXP4Q8IVH2 680 aaPredicted RBP14.93□□□□□ -0.02
VPS33A-207ENST00000542790 PUS7LQ9H0K6 701 aaKnown RBP14.93□□□□□ -0.02
VPS33A-207ENST00000542790 ARMT1Q9H993 441 aa14.93□□□□□ -0.02
VPS33A-207ENST00000542790 COL2A1P02458 1487 aaPredicted RBP14.93□□□□□ -0.02
VPS33A-207ENST00000542790 TRPM7Q96QT4 1865 aa14.93□□□□□ -0.02
VPS33A-207ENST00000542790 ECM29Q5VYK3 1845 aa14.92□□□□□ -0.02
VPS33A-207ENST00000542790 TRIM6-TRIM34B2RNG4 842 aa14.92□□□□□ -0.02
VPS33A-207ENST00000542790 HLA-DOAP06340 250 aa14.92□□□□□ -0.02
VPS33A-207ENST00000542790 ZBTB48P10074 688 aaPredicted RBP14.92□□□□□ -0.02
VPS33A-207ENST00000542790 KIF23Q02241 960 aaPredicted RBP14.92□□□□□ -0.02
VPS33A-207ENST00000542790 EFCAB3Q8N7B9 438 aa14.92□□□□□ -0.02
VPS33A-207ENST00000542790 ZKSCAN4Q969J2 545 aaPredicted RBP14.92□□□□□ -0.02
VPS33A-207ENST00000542790 CCDC136Q96JN2 1154 aa14.92□□□□□ -0.02
VPS33A-207ENST00000542790 ELP3Q9H9T3 547 aa14.92□□□□□ -0.02
VPS33A-207ENST00000542790 XPO5Q9HAV4 1204 aaKnown RBP eCLIP14.92□□□□□ -0.02
VPS33A-207ENST00000542790 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.92□□□□□ -0.02
VPS33A-207ENST00000542790 HERC5Q9UII4 1024 aaKnown RBP14.92□□□□□ -0.02
VPS33A-207ENST00000542790 PALD1Q9ULE6 856 aa14.92□□□□□ -0.02
VPS33A-207ENST00000542790 POLR2AP24928 1970 aaKnown RBP14.92□□□□□ -0.02
VPS33A-207ENST00000542790 MAST2Q6P0Q8 1798 aa14.91□□□□□ -0.02
VPS33A-207ENST00000542790 PHF20L1A8MW92 1017 aa14.91□□□□□ -0.02
VPS33A-207ENST00000542790 PDE4AP27815 886 aa14.91□□□□□ -0.02
VPS33A-207ENST00000542790 ERICH6BQ5W0A0 696 aa14.91□□□□□ -0.02
VPS33A-207ENST00000542790 SPRYD7Q5W111 196 aa14.91□□□□□ -0.02
VPS33A-207ENST00000542790 TTC6Q86TZ1 520 aa14.91□□□□□ -0.02
VPS33A-207ENST00000542790 OSBP2Q969R2 916 aa14.91□□□□□ -0.02
VPS33A-207ENST00000542790 DDRGK1Q96HY6 314 aa14.91□□□□□ -0.02
VPS33A-207ENST00000542790 STRBPQ96SI9 672 aaKnown RBP14.91□□□□□ -0.02
VPS33A-207ENST00000542790 TRIM34Q9BYJ4 488 aa14.91□□□□□ -0.02
VPS33A-207ENST00000542790 ATP8A2Q9NTI2 1148 aa14.91□□□□□ -0.02
VPS33A-207ENST00000542790 SAP30BPQ9UHR5 308 aaKnown RBP14.91□□□□□ -0.02
VPS33A-207ENST00000542790 SLC4A4Q9Y6R1 1079 aa14.91□□□□□ -0.02
VPS33A-207ENST00000542790 MYH2Q9UKX2 1941 aa14.91□□□□□ -0.02
VPS33A-207ENST00000542790 CTNND1O60716 968 aaKnown RBP14.9□□□□□ -0.02
VPS33A-207ENST00000542790 INPP5BP32019 993 aa14.9□□□□□ -0.02
VPS33A-207ENST00000542790 ZMYM1Q5SVZ6 1142 aa14.9□□□□□ -0.02
VPS33A-207ENST00000542790 METTL16Q86W50 562 aaKnown RBP14.9□□□□□ -0.02
VPS33A-207ENST00000542790 ERO1BQ86YB8 467 aa14.9□□□□□ -0.02
VPS33A-207ENST00000542790 CRACR2BQ8N4Y2 399 aaPredicted RBP14.9□□□□□ -0.02
VPS33A-207ENST00000542790 SDR42E1Q8WUS8 393 aa14.9□□□□□ -0.02
VPS33A-207ENST00000542790 RILPL2Q969X0 211 aa14.9□□□□□ -0.02
VPS33A-207ENST00000542790 OPTNQ96CV9 577 aa14.9□□□□□ -0.02
VPS33A-207ENST00000542790 WNK4Q96J92 1243 aa14.9□□□□□ -0.02
VPS33A-207ENST00000542790 BEGAINQ9BUH8 593 aa14.9□□□□□ -0.02
VPS33A-207ENST00000542790 DCP1AQ9NPI6 582 aaPredicted RBP14.9□□□□□ -0.02
VPS33A-207ENST00000542790 WBP1LQ9NX94 342 aa14.9□□□□□ -0.02
VPS33A-207ENST00000542790 MCM9Q9NXL9 1143 aa14.9□□□□□ -0.02
VPS33A-207ENST00000542790 SNCAIPQ9Y6H5 919 aa14.9□□□□□ -0.02
VPS33A-207ENST00000542790 SPDYE5A6NIY4 337 aa14.89□□□□□ -0.03
VPS33A-207ENST00000542790 PRKAB2O43741 272 aa14.89□□□□□ -0.03
VPS33A-207ENST00000542790 POLR3DP05423 398 aaPredicted RBP14.89□□□□□ -0.03
VPS33A-207ENST00000542790 GNAT2P19087 354 aa14.89□□□□□ -0.03
VPS33A-207ENST00000542790 INHBEP58166 350 aa14.89□□□□□ -0.03
VPS33A-207ENST00000542790 NOL9Q5SY16 702 aaKnown RBP14.89□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms