RNA–Protein interactions for RNA: ENST00000542033.5

USP28-210, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 852 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-210ENST00000542033 DCDC2CA8MYV0 355 aa5.29□□□□□ -1.56
USP28-210ENST00000542033 PF4P02776 101 aa5.29□□□□□ -1.56
USP28-210ENST00000542033 LMNB2Q03252 620 aa5.29□□□□□ -1.56
USP28-210ENST00000542033 CYP27C1Q4G0S4 372 aa5.29□□□□□ -1.56
USP28-210ENST00000542033 SEZ6L2Q6UXD5 910 aa5.29□□□□□ -1.56
USP28-210ENST00000542033 CDC37L1Q7L3B6 337 aa5.29□□□□□ -1.56
USP28-210ENST00000542033 JARID2Q92833 1246 aaPredicted RBP5.29□□□□□ -1.56
USP28-210ENST00000542033 GAL3ST3Q96A11 431 aa5.29□□□□□ -1.56
USP28-210ENST00000542033 ISL2Q96A47 359 aa5.29□□□□□ -1.56
USP28-210ENST00000542033 PCMTD2Q9NV79 361 aa5.29□□□□□ -1.56
USP28-210ENST00000542033 PRR19A6NJB7 356 aa5.28□□□□□ -1.56
USP28-210ENST00000542033 BPNT1O95861 308 aa5.28□□□□□ -1.56
USP28-210ENST00000542033 SSTR4P31391 388 aa5.28□□□□□ -1.56
USP28-210ENST00000542033 ADMP35318 185 aa5.28□□□□□ -1.56
USP28-210ENST00000542033 FAM160A1Q05DH4 1040 aa5.28□□□□□ -1.56
USP28-210ENST00000542033 PTPN11Q06124 597 aaPredicted RBP5.28□□□□□ -1.56
USP28-210ENST00000542033 PPM1JQ5JR12 505 aa5.28□□□□□ -1.56
USP28-210ENST00000542033 NBPF11Q86T75 865 aa5.28□□□□□ -1.56
USP28-210ENST00000542033 CCDC84Q86UT8 332 aaPredicted RBP5.28□□□□□ -1.56
USP28-210ENST00000542033 USP48Q86UV5 1035 aa5.28□□□□□ -1.56
USP28-210ENST00000542033 C12orf40Q86WS4 652 aa5.28□□□□□ -1.56
USP28-210ENST00000542033 ZNF507Q8TCN5 953 aa5.28□□□□□ -1.56
USP28-210ENST00000542033 PLPPR2Q96GM1 343 aa5.28□□□□□ -1.56
USP28-210ENST00000542033 RHOVQ96L33 236 aa5.28□□□□□ -1.56
USP28-210ENST00000542033 LGR6Q9HBX8 967 aa5.28□□□□□ -1.56
USP28-210ENST00000542033 C1GALT1Q9NS00 363 aa5.28□□□□□ -1.56
USP28-210ENST00000542033 CSADQ9Y600 493 aa5.28□□□□□ -1.56
USP28-210ENST00000542033 PRAMEF27A3QJZ7 478 aa5.27□□□□□ -1.57
USP28-210ENST00000542033 KIAA1324LA8MWY0 1029 aaPredicted RBP5.27□□□□□ -1.57
USP28-210ENST00000542033 CYP26A1O43174 497 aa5.27□□□□□ -1.57
USP28-210ENST00000542033 NEFMP07197 916 aa5.27□□□□□ -1.57
USP28-210ENST00000542033 FOSL1P15407 271 aa5.27□□□□□ -1.57
USP28-210ENST00000542033 EIF4A3P38919 411 aaKnown RBP5.27□□□□□ -1.57
USP28-210ENST00000542033 CD97P48960 835 aa5.27□□□□□ -1.57
USP28-210ENST00000542033 RING1Q06587 406 aa5.27□□□□□ -1.57
USP28-210ENST00000542033 WIPI1Q5MNZ9 446 aaPredicted RBP5.27□□□□□ -1.57
USP28-210ENST00000542033 ZBTB37Q5TC79 503 aa5.27□□□□□ -1.57
USP28-210ENST00000542033 LRFN4Q6PJG9 635 aa5.27□□□□□ -1.57
USP28-210ENST00000542033 OGFOD3Q6PK18 319 aa5.27□□□□□ -1.57
USP28-210ENST00000542033 GOLM1Q8NBJ4 401 aa5.27□□□□□ -1.57
USP28-210ENST00000542033 GATA6Q92908 595 aa5.27□□□□□ -1.57
USP28-210ENST00000542033 KRTAP4-12Q9BQ66 201 aa5.27□□□□□ -1.57
USP28-210ENST00000542033 KRTAP9-9Q9BYP9 154 aa5.27□□□□□ -1.57
USP28-210ENST00000542033 KRTAP9-4Q9BYQ2 154 aa5.27□□□□□ -1.57
USP28-210ENST00000542033 TACC3Q9Y6A5 838 aa5.27□□□□□ -1.57
USP28-210ENST00000542033 FAM170BA6NMN3 283 aa5.26□□□□□ -1.57
USP28-210ENST00000542033 DYNC1LI2O43237 492 aaPredicted RBP5.26□□□□□ -1.57
USP28-210ENST00000542033 HYAL3O43820 417 aaPredicted RBP5.26□□□□□ -1.57
USP28-210ENST00000542033 FAM87AP0C7U9 286 aa5.26□□□□□ -1.57
USP28-210ENST00000542033 TCF3P15923 654 aa5.26□□□□□ -1.57
USP28-210ENST00000542033 ETF1P62495 437 aaKnown RBP5.26□□□□□ -1.57
USP28-210ENST00000542033 HDLBPQ00341 1268 aaKnown RBP5.26□□□□□ -1.57
USP28-210ENST00000542033 RPL6Q02878 288 aaKnown RBP5.26□□□□□ -1.57
USP28-210ENST00000542033 PDE4BQ07343 736 aa5.26□□□□□ -1.57
USP28-210ENST00000542033 CDK5R2Q13319 367 aa5.26□□□□□ -1.57
USP28-210ENST00000542033 INPP5AQ14642 412 aa5.26□□□□□ -1.57
USP28-210ENST00000542033 ZNF394Q53GI3 561 aa5.26□□□□□ -1.57
USP28-210ENST00000542033 C9orf131Q5VYM1 1079 aa5.26□□□□□ -1.57
USP28-210ENST00000542033 PDZRN4Q6ZMN7 1036 aaPredicted RBP5.26□□□□□ -1.57
USP28-210ENST00000542033 BNC2Q6ZN30 1099 aaPredicted RBP5.26□□□□□ -1.57
USP28-210ENST00000542033 ZNF765Q7L2R6 523 aa5.26□□□□□ -1.57
USP28-210ENST00000542033 CYFIP1Q7L576 1253 aa5.26□□□□□ -1.57
USP28-210ENST00000542033 NT5DC4Q86YG4 428 aa5.26□□□□□ -1.57
USP28-210ENST00000542033 ZNF296Q8WUU4 475 aaPredicted RBP5.26□□□□□ -1.57
USP28-210ENST00000542033 GATAD2BQ8WXI9 593 aa5.26□□□□□ -1.57
USP28-210ENST00000542033 SUPT16HQ9Y5B9 1047 aaKnown RBP5.26□□□□□ -1.57
USP28-210ENST00000542033 PCDHGB7Q9Y5F8 929 aa5.26□□□□□ -1.57
USP28-210ENST00000542033 F13A1P00488 732 aa5.25□□□□□ -1.57
USP28-210ENST00000542033 FBXL19Q6PCT2 694 aa5.25□□□□□ -1.57
USP28-210ENST00000542033 KIAA0825Q8IV33 1275 aa5.25□□□□□ -1.57
USP28-210ENST00000542033 ZNF654Q8IZM8 581 aa5.25□□□□□ -1.57
USP28-210ENST00000542033 SPON2Q9BUD6 331 aa5.25□□□□□ -1.57
USP28-210ENST00000542033 WNT10AQ9GZT5 417 aa5.25□□□□□ -1.57
USP28-210ENST00000542033 CILPO75339 1184 aa5.24□□□□□ -1.57
USP28-210ENST00000542033 NTF4P34130 210 aa5.24□□□□□ -1.57
USP28-210ENST00000542033 CWF19L2Q2TBE0 894 aaKnown RBP5.24□□□□□ -1.57
USP28-210ENST00000542033 FAM196AQ6ZSG2 479 aa5.24□□□□□ -1.57
USP28-210ENST00000542033 ARHGAP27Q6ZUM4 889 aa5.24□□□□□ -1.57
USP28-210ENST00000542033 METTL16Q86W50 562 aaKnown RBP5.24□□□□□ -1.57
USP28-210ENST00000542033 DTX1Q86Y01 620 aa5.24□□□□□ -1.57
USP28-210ENST00000542033 HID1Q8IV36 788 aa5.24□□□□□ -1.57
USP28-210ENST00000542033 DUSP23Q9BVJ7 150 aa5.24□□□□□ -1.57
USP28-210ENST00000542033 CCSER2Q9H7U1 834 aa5.24□□□□□ -1.57
USP28-210ENST00000542033 LRRC4CQ9HCJ2 640 aa5.24□□□□□ -1.57
USP28-210ENST00000542033 ADAMTS1Q9UHI8 967 aa5.24□□□□□ -1.57
USP28-210ENST00000542033 GTF2IRD1Q9UHL9 959 aa5.24□□□□□ -1.57
USP28-210ENST00000542033 DDX41Q9UJV9 622 aaKnown RBP5.24□□□□□ -1.57
USP28-210ENST00000542033 FAM221AA4D161 298 aa5.23□□□□□ -1.57
USP28-210ENST00000542033 TLR3O15455 904 aaKnown RBP5.23□□□□□ -1.57
USP28-210ENST00000542033 LRIG2O94898 1065 aa5.23□□□□□ -1.57
USP28-210ENST00000542033 SPINK2P20155 84 aa5.23□□□□□ -1.57
USP28-210ENST00000542033 GARTP22102 1010 aa5.23□□□□□ -1.57
USP28-210ENST00000542033 ERCC5P28715 1186 aaPredicted RBP5.23□□□□□ -1.57
USP28-210ENST00000542033 GRK4P32298 578 aa5.23□□□□□ -1.57
USP28-210ENST00000542033 CAP2P40123 477 aa5.23□□□□□ -1.57
USP28-210ENST00000542033 CDK8P49336 464 aa5.23□□□□□ -1.57
USP28-210ENST00000542033 APOBRQ0VD83 1088 aa5.23□□□□□ -1.57
USP28-210ENST00000542033 MPP2Q14168 576 aa5.23□□□□□ -1.57
USP28-210ENST00000542033 SHISA5Q8N114 240 aa5.23□□□□□ -1.57
USP28-210ENST00000542033 TOP6BLQ8N6T0 577 aa5.23□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms