RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 AGTPBP1Q9UPW5 1226 aa19.12■□□□□ 0.65
CLSTN3-213ENST00000541953 AKAP2Q9Y2D5 859 aa19.12■□□□□ 0.65
CLSTN3-213ENST00000541953 SLC45A1Q9Y2W3 748 aa19.12■□□□□ 0.65
CLSTN3-213ENST00000541953 FOCADQ5VW36 1801 aa19.11■□□□□ 0.65
CLSTN3-213ENST00000541953 PEX10O60683 326 aa19.11■□□□□ 0.65
CLSTN3-213ENST00000541953 SH3RF3Q8TEJ3 882 aaPredicted RBP19.11■□□□□ 0.65
CLSTN3-213ENST00000541953 SMCR8Q8TEV9 937 aaPredicted RBP19.11■□□□□ 0.65
CLSTN3-213ENST00000541953 DPF3Q92784 378 aa19.11■□□□□ 0.65
CLSTN3-213ENST00000541953 CLUAP1Q96AJ1 413 aa19.11■□□□□ 0.65
CLSTN3-213ENST00000541953 XPO5Q9HAV4 1204 aaKnown RBP eCLIP19.11■□□□□ 0.653e-6■■■□□ 18.9
CLSTN3-213ENST00000541953 TNPO2O14787 897 aaKnown RBP19.1■□□□□ 0.65
CLSTN3-213ENST00000541953 TBC1D12O60347 775 aa19.1■□□□□ 0.65
CLSTN3-213ENST00000541953 SPP2Q13103 211 aa19.1■□□□□ 0.65
CLSTN3-213ENST00000541953 ADGRA1Q86SQ6 560 aa19.1■□□□□ 0.65
CLSTN3-213ENST00000541953 SLF2Q8IX21 1173 aa19.1■□□□□ 0.65
CLSTN3-213ENST00000541953 PRO3102Q9H379 93 aa19.1■□□□□ 0.65
CLSTN3-213ENST00000541953 SNRKQ9NRH2 765 aa19.1■□□□□ 0.65
CLSTN3-213ENST00000541953 RAI14Q9P0K7 980 aa19.1■□□□□ 0.65
CLSTN3-213ENST00000541953 COL6A3P12111 3177 aa19.09■□□□□ 0.65
CLSTN3-213ENST00000541953 NPM3O75607 178 aaKnown RBP19.09■□□□□ 0.65
CLSTN3-213ENST00000541953 FARP2O94887 1054 aaPredicted RBP19.09■□□□□ 0.65
CLSTN3-213ENST00000541953 HMGCS2P54868 508 aa19.09■□□□□ 0.65
CLSTN3-213ENST00000541953 UBXN2AP68543 259 aa19.09■□□□□ 0.65
CLSTN3-213ENST00000541953 DNAJC18Q9H819 358 aa19.09■□□□□ 0.65
CLSTN3-213ENST00000541953 TAOK2Q9UL54 1235 aa19.09■□□□□ 0.65
CLSTN3-213ENST00000541953 HDAC5Q9UQL6 1122 aa19.09■□□□□ 0.65
CLSTN3-213ENST00000541953 SGPL1O95470 568 aa19.08■□□□□ 0.64
CLSTN3-213ENST00000541953 GNAI2P04899 355 aa19.08■□□□□ 0.64
CLSTN3-213ENST00000541953 TRIM32Q13049 653 aa19.08■□□□□ 0.64
CLSTN3-213ENST00000541953 ATF7IPQ6VMQ6 1270 aa19.08■□□□□ 0.64
CLSTN3-213ENST00000541953 TEX11Q8IYF3 940 aa19.08■□□□□ 0.64
CLSTN3-213ENST00000541953 NKX2-3Q8TAU0 364 aa19.08■□□□□ 0.64
CLSTN3-213ENST00000541953 FRAT1Q92837 279 aaPredicted RBP19.08■□□□□ 0.64
CLSTN3-213ENST00000541953 DEFB118Q96PH6 123 aa19.08■□□□□ 0.64
CLSTN3-213ENST00000541953 CAP2P40123 477 aa19.07■□□□□ 0.64
CLSTN3-213ENST00000541953 IRF5Q13568 498 aa19.07■□□□□ 0.64
CLSTN3-213ENST00000541953 FAM110CQ1W6H9 321 aa19.07■□□□□ 0.64
CLSTN3-213ENST00000541953 GORABQ5T7V8 394 aa19.07■□□□□ 0.64
CLSTN3-213ENST00000541953 TMEM57Q8N5G2 664 aa19.07■□□□□ 0.64
CLSTN3-213ENST00000541953 ZNF280CQ8ND82 737 aa19.07■□□□□ 0.64
CLSTN3-213ENST00000541953 DIS3LQ8TF46 1054 aaKnown RBP19.07■□□□□ 0.64
CLSTN3-213ENST00000541953 DBNDD2Q9BQY9 259 aa19.07■□□□□ 0.64
CLSTN3-213ENST00000541953 PAK6Q9NQU5 681 aaPredicted RBP19.07■□□□□ 0.64
CLSTN3-213ENST00000541953 AATFQ9NY61 560 aaKnown RBP eCLIP19.07■□□□□ 0.64
CLSTN3-213ENST00000541953 PROCA1Q8NCQ7 364 aaPredicted RBP19.06■□□□□ 0.64
CLSTN3-213ENST00000541953 PXYLP1Q8TE99 480 aa19.06■□□□□ 0.64
CLSTN3-213ENST00000541953 C1orf115Q9H7X2 142 aa19.06■□□□□ 0.64
CLSTN3-213ENST00000541953 ZBTB7BO15156 539 aaPredicted RBP19.05■□□□□ 0.64
CLSTN3-213ENST00000541953 CYP2E1P05181 493 aaPredicted RBP19.05■□□□□ 0.64
CLSTN3-213ENST00000541953 GSTO1P78417 241 aa19.05■□□□□ 0.64
CLSTN3-213ENST00000541953 MAPKAPK5Q8IW41 473 aa19.05■□□□□ 0.64
CLSTN3-213ENST00000541953 ASCC2Q9H1I8 757 aaPredicted RBP19.05■□□□□ 0.64
CLSTN3-213ENST00000541953 TLR7Q9NYK1 1049 aaKnown RBP19.05■□□□□ 0.64
CLSTN3-213ENST00000541953 LRP2BPQ9P2M1 347 aa19.05■□□□□ 0.64
CLSTN3-213ENST00000541953 LDHCP07864 332 aa19.04■□□□□ 0.64
CLSTN3-213ENST00000541953 G3BP1Q13283 466 aaKnown RBP eCLIP19.04■□□□□ 0.64
CLSTN3-213ENST00000541953 POLA2Q14181 598 aa19.04■□□□□ 0.64
CLSTN3-213ENST00000541953 TNNI3KQ59H18 835 aa19.04■□□□□ 0.64
CLSTN3-213ENST00000541953 CRISPLD2Q9H0B8 497 aa19.04■□□□□ 0.64
CLSTN3-213ENST00000541953 PIH1D3Q9NQM4 214 aaKnown RBP19.04■□□□□ 0.64
CLSTN3-213ENST00000541953 GJD2Q9UKL4 321 aa19.04■□□□□ 0.64
CLSTN3-213ENST00000541953 FPGT-TNNI3KV9GXZ4 949 aa19.04■□□□□ 0.64
CLSTN3-213ENST00000541953 FLT1P17948 1338 aa19.03■□□□□ 0.64
CLSTN3-213ENST00000541953 DDX60LQ5H9U9 1706 aaKnown RBP19.03■□□□□ 0.64
CLSTN3-213ENST00000541953 USP17L5A8MUK1 530 aa19.03■□□□□ 0.64
CLSTN3-213ENST00000541953 MTMR2Q13614 643 aa19.03■□□□□ 0.64
CLSTN3-213ENST00000541953 SH3D19Q5HYK7 790 aa19.03■□□□□ 0.64
CLSTN3-213ENST00000541953 NAA16Q6N069 864 aaPredicted RBP19.03■□□□□ 0.64
CLSTN3-213ENST00000541953 POTEEQ6S8J3 1075 aa19.03■□□□□ 0.64
CLSTN3-213ENST00000541953 HTATIP2Q9BUP3 242 aa19.03■□□□□ 0.64
CLSTN3-213ENST00000541953 DNAH12Q6ZR08 3092 aa19.02■□□□□ 0.64
CLSTN3-213ENST00000541953 CCER2I3L3R5 266 aa19.02■□□□□ 0.64
CLSTN3-213ENST00000541953 GDF11O95390 407 aa19.02■□□□□ 0.64
CLSTN3-213ENST00000541953 UQCRFS1P1P0C7P4 283 aa19.02■□□□□ 0.64
CLSTN3-213ENST00000541953 MNX1P50219 401 aaPredicted RBP19.02■□□□□ 0.64
CLSTN3-213ENST00000541953 DYNLL1P63167 89 aaKnown RBP19.02■□□□□ 0.64
CLSTN3-213ENST00000541953 TGFBRAP1Q8WUH2 860 aa19.02■□□□□ 0.64
CLSTN3-213ENST00000541953 COA7Q96BR5 231 aa19.02■□□□□ 0.64
CLSTN3-213ENST00000541953 PAWRQ96IZ0 340 aaKnown RBP19.02■□□□□ 0.64
CLSTN3-213ENST00000541953 XRN2Q9H0D6 950 aaKnown RBP eCLIP19.02■□□□□ 0.646e-7■■■■□ 21.6
CLSTN3-213ENST00000541953 TXNRD2Q9NNW7 524 aa19.02■□□□□ 0.64
CLSTN3-213ENST00000541953 PNMA3Q9UL41 463 aa19.02■□□□□ 0.64
CLSTN3-213ENST00000541953 PALD1Q9ULE6 856 aa19.02■□□□□ 0.64
CLSTN3-213ENST00000541953 NDUFB9Q9Y6M9 179 aa19.02■□□□□ 0.64
CLSTN3-213ENST00000541953 SOX1O00570 391 aaPredicted RBP19.01■□□□□ 0.63
CLSTN3-213ENST00000541953 MAP4K4O95819 1239 aaPredicted RBP19.01■□□□□ 0.63
CLSTN3-213ENST00000541953 TFRCP02786 760 aaKnown RBP19.01■□□□□ 0.63
CLSTN3-213ENST00000541953 RLBP1P12271 317 aa19.01■□□□□ 0.63
CLSTN3-213ENST00000541953 ZAP70P43403 619 aa19.01■□□□□ 0.63
CLSTN3-213ENST00000541953 TTC39AQ5SRH9 613 aa19.01■□□□□ 0.63
CLSTN3-213ENST00000541953 SSH3Q8TE77 659 aa19.01■□□□□ 0.63
CLSTN3-213ENST00000541953 SAP30BPQ9UHR5 308 aaKnown RBP19.01■□□□□ 0.63
CLSTN3-213ENST00000541953 HERC5Q9UII4 1024 aaKnown RBP19.01■□□□□ 0.63
CLSTN3-213ENST00000541953 DBNLQ9UJU6 430 aaKnown RBP19.01■□□□□ 0.63
CLSTN3-213ENST00000541953 MYH1P12882 1939 aa19■□□□□ 0.63
CLSTN3-213ENST00000541953 PPP4CP60510 307 aa19■□□□□ 0.63
CLSTN3-213ENST00000541953 METTL16Q86W50 562 aaKnown RBP19■□□□□ 0.63
CLSTN3-213ENST00000541953 TRIB2Q92519 343 aa19■□□□□ 0.63
CLSTN3-213ENST00000541953 P2RX7Q99572 595 aaKnown RBP19■□□□□ 0.63
CLSTN3-213ENST00000541953 PI4KBQ9UBF8 816 aa19■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms