RNA–Protein interactions for RNA: ENST00000540812.1

TRIM65-203, Transcript of tripartite motif containing 65, human

TSL 2

Gene TRIM65, Length 385 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TRIM65-203	ENST00000540812	COL2A1	P02458	1487 aa	Predicted RBP	19.98	■□□□□ 0.79
TRIM65-203	ENST00000540812	SLAIN1	Q8ND83	568 aa		19.97	■□□□□ 0.79
TRIM65-203	ENST00000540812	SMCR8	Q8TEV9	937 aa	Predicted RBP	19.97	■□□□□ 0.79
TRIM65-203	ENST00000540812	RNF208	Q9H0X6	261 aa		19.97	■□□□□ 0.79
TRIM65-203	ENST00000540812		H0YGN5	161 aa		19.96	■□□□□ 0.79
TRIM65-203	ENST00000540812	GJB1	P08034	283 aa		19.96	■□□□□ 0.79
TRIM65-203	ENST00000540812	GJA8	P48165	433 aa		19.96	■□□□□ 0.79
TRIM65-203	ENST00000540812	FLT3LG	P49771	235 aa		19.96	■□□□□ 0.79
TRIM65-203	ENST00000540812	UBXN2A	P68543	259 aa		19.96	■□□□□ 0.79
TRIM65-203	ENST00000540812	ATP8B2	P98198	1209 aa		19.96	■□□□□ 0.79
TRIM65-203	ENST00000540812	SPP2	Q13103	211 aa		19.96	■□□□□ 0.79
TRIM65-203	ENST00000540812	TTC39A	Q5SRH9	613 aa		19.96	■□□□□ 0.79
TRIM65-203	ENST00000540812	ANKRD13C	Q8N6S4	541 aa		19.96	■□□□□ 0.79
TRIM65-203	ENST00000540812	SSH3	Q8TE77	659 aa		19.96	■□□□□ 0.79
TRIM65-203	ENST00000540812	GPR108	Q9NPR9	543 aa		19.96	■□□□□ 0.79
TRIM65-203	ENST00000540812	AATF	Q9NY61	560 aa	Known RBP eCLIP	19.96	■□□□□ 0.79
TRIM65-203	ENST00000540812	RANBP2	P49792	3224 aa	Known RBP	19.95	■□□□□ 0.78
TRIM65-203	ENST00000540812	ADCY3	O60266	1144 aa		19.95	■□□□□ 0.78
TRIM65-203	ENST00000540812	ELN	P15502	786 aa		19.95	■□□□□ 0.78
TRIM65-203	ENST00000540812	CAP2	P40123	477 aa		19.95	■□□□□ 0.78
TRIM65-203	ENST00000540812	OS9	Q13438	667 aa	Predicted RBP	19.95	■□□□□ 0.78
TRIM65-203	ENST00000540812	NAA16	Q6N069	864 aa	Predicted RBP	19.95	■□□□□ 0.78
TRIM65-203	ENST00000540812	UBE2Q1	Q7Z7E8	422 aa		19.95	■□□□□ 0.78
TRIM65-203	ENST00000540812	ADGRA1	Q86SQ6	560 aa		19.95	■□□□□ 0.78
TRIM65-203	ENST00000540812	ZNF280C	Q8ND82	737 aa		19.95	■□□□□ 0.78
TRIM65-203	ENST00000540812	UNC93B1	Q9H1C4	597 aa		19.95	■□□□□ 0.78
TRIM65-203	ENST00000540812	COLQ	Q9Y215	455 aa	Predicted RBP	19.95	■□□□□ 0.78
TRIM65-203	ENST00000540812	TRIOBP	Q9H2D6	2365 aa		19.94	■□□□□ 0.78
TRIM65-203	ENST00000540812	TNPO2	O14787	897 aa	Known RBP	19.94	■□□□□ 0.78
TRIM65-203	ENST00000540812	SURF6	O75683	361 aa	Known RBP	19.94	■□□□□ 0.78
TRIM65-203	ENST00000540812	CYP2E1	P05181	493 aa	Predicted RBP	19.94	■□□□□ 0.78
TRIM65-203	ENST00000540812	RLBP1	P12271	317 aa		19.94	■□□□□ 0.78
TRIM65-203	ENST00000540812	HMGCS2	P54868	508 aa		19.94	■□□□□ 0.78
TRIM65-203	ENST00000540812	MIER1	Q8N108	512 aa		19.94	■□□□□ 0.78
TRIM65-203	ENST00000540812	PROCA1	Q8NCQ7	364 aa	Predicted RBP	19.94	■□□□□ 0.78
TRIM65-203	ENST00000540812	NKX2-3	Q8TAU0	364 aa		19.94	■□□□□ 0.78
TRIM65-203	ENST00000540812	FXR1	P51114	621 aa	Known RBP eCLIP	19.93	■□□□□ 0.78
TRIM65-203	ENST00000540812	PPP4C	P60510	307 aa		19.93	■□□□□ 0.78
TRIM65-203	ENST00000540812	CCDC158	Q5M9N0	1113 aa		19.93	■□□□□ 0.78
TRIM65-203	ENST00000540812	MAPKAPK5	Q8IW41	473 aa		19.93	■□□□□ 0.78
TRIM65-203	ENST00000540812	NOL10	Q9BSC4	688 aa	Known RBP	19.93	■□□□□ 0.78
TRIM65-203	ENST00000540812	PIH1D3	Q9NQM4	214 aa	Known RBP	19.93	■□□□□ 0.78
TRIM65-203	ENST00000540812	PI4KB	Q9UBF8	816 aa		19.93	■□□□□ 0.78
TRIM65-203	ENST00000540812	HERC5	Q9UII4	1024 aa	Known RBP	19.93	■□□□□ 0.78
TRIM65-203	ENST00000540812	SZT2	Q5T011	3432 aa		19.93	■□□□□ 0.78
TRIM65-203	ENST00000540812	SIPA1L1	O43166	1804 aa		19.92	■□□□□ 0.78
TRIM65-203	ENST00000540812	DOCK3	Q8IZD9	2030 aa		19.92	■□□□□ 0.78
TRIM65-203	ENST00000540812	USP17L5	A8MUK1	530 aa		19.92	■□□□□ 0.78
TRIM65-203	ENST00000540812	BAG3	O95817	575 aa		19.92	■□□□□ 0.78
TRIM65-203	ENST00000540812	INHA	P05111	366 aa		19.92	■□□□□ 0.78
TRIM65-203	ENST00000540812	ZAP70	P43403	619 aa		19.92	■□□□□ 0.78
TRIM65-203	ENST00000540812	JAG1	P78504	1218 aa		19.92	■□□□□ 0.78
TRIM65-203	ENST00000540812	FAM110C	Q1W6H9	321 aa		19.92	■□□□□ 0.78
TRIM65-203	ENST00000540812	U2AF1L4	Q8WU68	220 aa	Known RBP	19.92	■□□□□ 0.78
TRIM65-203	ENST00000540812	TGFBRAP1	Q8WUH2	860 aa		19.92	■□□□□ 0.78
TRIM65-203	ENST00000540812	DNAJC18	Q9H819	358 aa		19.92	■□□□□ 0.78
TRIM65-203	ENST00000540812	TLR7	Q9NYK1	1049 aa	Known RBP	19.92	■□□□□ 0.78
TRIM65-203	ENST00000540812	DBNL	Q9UJU6	430 aa	Known RBP	19.92	■□□□□ 0.78
TRIM65-203	ENST00000540812	PNMA3	Q9UL41	463 aa		19.92	■□□□□ 0.78
TRIM65-203	ENST00000540812	NOP58	Q9Y2X3	529 aa	Known RBP	19.92	■□□□□ 0.78
TRIM65-203	ENST00000540812	FLT1	P17948	1338 aa		19.92	■□□□□ 0.78
TRIM65-203	ENST00000540812	LOC285556	D6RIA3	1793 aa		19.92	■□□□□ 0.78
TRIM65-203	ENST00000540812	ATAD5	Q96QE3	1844 aa		19.92	■□□□□ 0.78
TRIM65-203	ENST00000540812	MAST2	Q6P0Q8	1798 aa		19.91	■□□□□ 0.78
TRIM65-203	ENST00000540812	IRF5	Q13568	498 aa		19.91	■□□□□ 0.78
TRIM65-203	ENST00000540812	SHROOM1	Q2M3G4	852 aa	Predicted RBP	19.91	■□□□□ 0.78
TRIM65-203	ENST00000540812	ITPRIP	Q8IWB1	547 aa		19.91	■□□□□ 0.78
TRIM65-203	ENST00000540812	FTSJ3	Q8IY81	847 aa	Known RBP	19.91	■□□□□ 0.78
TRIM65-203	ENST00000540812	DPF3	Q92784	378 aa		19.91	■□□□□ 0.78
TRIM65-203	ENST00000540812	TBC1D2	Q9BYX2	928 aa		19.91	■□□□□ 0.78
TRIM65-203	ENST00000540812	TAOK2	Q9UL54	1235 aa		19.91	■□□□□ 0.78
TRIM65-203	ENST00000540812	ZBTB7B	O15156	539 aa	Predicted RBP	19.9	■□□□□ 0.78
TRIM65-203	ENST00000540812	PLCG2	P16885	1265 aa		19.9	■□□□□ 0.78
TRIM65-203	ENST00000540812	DYNLL1	P63167	89 aa	Known RBP	19.9	■□□□□ 0.78
TRIM65-203	ENST00000540812	HNRNPU	Q00839	825 aa	Known RBP eCLIP	19.9	■□□□□ 0.78
TRIM65-203	ENST00000540812	SH3D19	Q5HYK7	790 aa		19.9	■□□□□ 0.78
TRIM65-203	ENST00000540812	PXYLP1	Q8TE99	480 aa		19.9	■□□□□ 0.78
TRIM65-203	ENST00000540812	ZNF512B	Q96KM6	892 aa	Predicted RBP	19.9	■□□□□ 0.78
TRIM65-203	ENST00000540812	CCDC8	Q9H0W5	538 aa	Predicted RBP	19.9	■□□□□ 0.78
TRIM65-203	ENST00000540812	ASCC2	Q9H1I8	757 aa	Predicted RBP	19.9	■□□□□ 0.78
TRIM65-203	ENST00000540812	DHX36	Q9H2U1	1008 aa	Known RBP	19.9	■□□□□ 0.78
TRIM65-203	ENST00000540812	FARP2	O94887	1054 aa	Predicted RBP	19.89	■□□□□ 0.77
TRIM65-203	ENST00000540812	SGPL1	O95470	568 aa		19.89	■□□□□ 0.77
TRIM65-203	ENST00000540812	MTMR2	Q13614	643 aa		19.89	■□□□□ 0.77
TRIM65-203	ENST00000540812	METTL16	Q86W50	562 aa	Known RBP	19.89	■□□□□ 0.77
TRIM65-203	ENST00000540812	COA7	Q96BR5	231 aa		19.89	■□□□□ 0.77
TRIM65-203	ENST00000540812	EAF2	Q96CJ1	260 aa	Predicted RBP	19.89	■□□□□ 0.77
TRIM65-203	ENST00000540812	AS3MT	Q9HBK9	375 aa		19.89	■□□□□ 0.77
TRIM65-203	ENST00000540812	SAP30BP	Q9UHR5	308 aa	Known RBP	19.89	■□□□□ 0.77
TRIM65-203	ENST00000540812	PALD1	Q9ULE6	856 aa		19.89	■□□□□ 0.77
TRIM65-203	ENST00000540812	MYO5A	Q9Y4I1	1855 aa	Known RBP	19.89	■□□□□ 0.77
TRIM65-203	ENST00000540812	GCLC	P48506	637 aa	Predicted RBP	19.88	■□□□□ 0.77
TRIM65-203	ENST00000540812	PABPC4	Q13310	644 aa	Known RBP eCLIP	19.88	■□□□□ 0.77
TRIM65-203	ENST00000540812	WDR18	Q9BV38	432 aa		19.88	■□□□□ 0.77
TRIM65-203	ENST00000540812	CDK5RAP2	Q96SN8	1893 aa		19.88	■□□□□ 0.77
TRIM65-203	ENST00000540812	GDF11	O95390	407 aa		19.87	■□□□□ 0.77
TRIM65-203	ENST00000540812	ASNS	P08243	561 aa		19.87	■□□□□ 0.77
TRIM65-203	ENST00000540812	CHRDL2	Q6WN34	429 aa		19.87	■□□□□ 0.77
TRIM65-203	ENST00000540812	CRACR2B	Q8N4Y2	399 aa	Predicted RBP	19.87	■□□□□ 0.77
TRIM65-203	ENST00000540812	DEFB118	Q96PH6	123 aa		19.87	■□□□□ 0.77

Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms