RNA–Protein interactions for RNA: ENST00000540428.1

CBX3P4-202, Transcript of chromobox 3 pseudogene 4, humanhuman

TSL 2 BASIC

Gene CBX3P4, Length 423 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3P4-202ENST00000540428 GPR108Q9NPR9 543 aa14.78□□□□□ -0.04
CBX3P4-202ENST00000540428 HERC5Q9UII4 1024 aaKnown RBP14.78□□□□□ -0.04
CBX3P4-202ENST00000540428 DOCK1Q14185 1865 aa14.78□□□□□ -0.04
CBX3P4-202ENST00000540428 SGPL1O95470 568 aa14.77□□□□□ -0.05
CBX3P4-202ENST00000540428 CAP2P40123 477 aa14.77□□□□□ -0.05
CBX3P4-202ENST00000540428 GCLCP48506 637 aaPredicted RBP14.77□□□□□ -0.05
CBX3P4-202ENST00000540428 PABPC4Q13310 644 aaKnown RBP eCLIP14.77□□□□□ -0.05
CBX3P4-202ENST00000540428 ZNF280CQ8ND82 737 aa14.77□□□□□ -0.05
CBX3P4-202ENST00000540428 COA7Q96BR5 231 aa14.77□□□□□ -0.05
CBX3P4-202ENST00000540428 NOL10Q9BSC4 688 aaKnown RBP14.77□□□□□ -0.05
CBX3P4-202ENST00000540428 DHX36Q9H2U1 1008 aaKnown RBP14.77□□□□□ -0.05
CBX3P4-202ENST00000540428 LRP2BPQ9P2M1 347 aa14.77□□□□□ -0.05
CBX3P4-202ENST00000540428 FAM196BA6NMK8 535 aa14.76□□□□□ -0.05
CBX3P4-202ENST00000540428 BAG3O95817 575 aa14.76□□□□□ -0.05
CBX3P4-202ENST00000540428 PLCG2P16885 1265 aa14.76□□□□□ -0.05
CBX3P4-202ENST00000540428 SPP2Q13103 211 aa14.76□□□□□ -0.05
CBX3P4-202ENST00000540428 POLA2Q14181 598 aa14.76□□□□□ -0.05
CBX3P4-202ENST00000540428 SH3D19Q5HYK7 790 aa14.76□□□□□ -0.05
CBX3P4-202ENST00000540428 TREML2Q5T2D2 321 aa14.76□□□□□ -0.05
CBX3P4-202ENST00000540428 CCDC84Q86UT8 332 aaPredicted RBP14.76□□□□□ -0.05
CBX3P4-202ENST00000540428 TEX11Q8IYF3 940 aa14.76□□□□□ -0.05
CBX3P4-202ENST00000540428 ANKRD13CQ8N6S4 541 aa14.76□□□□□ -0.05
CBX3P4-202ENST00000540428 FRAT1Q92837 279 aaPredicted RBP14.76□□□□□ -0.05
CBX3P4-202ENST00000540428 UNC93B1Q9H1C4 597 aa14.76□□□□□ -0.05
CBX3P4-202ENST00000540428 AS3MTQ9HBK9 375 aa14.76□□□□□ -0.05
CBX3P4-202ENST00000540428 FRMD4AQ9P2Q2 1039 aaPredicted RBP14.76□□□□□ -0.05
CBX3P4-202ENST00000540428 PI4KBQ9UBF8 816 aa14.76□□□□□ -0.05
CBX3P4-202ENST00000540428 USP17L5A8MUK1 530 aa14.75□□□□□ -0.05
CBX3P4-202ENST00000540428 BCAR3O75815 825 aa14.75□□□□□ -0.05
CBX3P4-202ENST00000540428 FARP2O94887 1054 aaPredicted RBP14.75□□□□□ -0.05
CBX3P4-202ENST00000540428 INHAP05111 366 aa14.75□□□□□ -0.05
CBX3P4-202ENST00000540428 PPP4CP60510 307 aa14.75□□□□□ -0.05
CBX3P4-202ENST00000540428 CCDC158Q5M9N0 1113 aa14.75□□□□□ -0.05
CBX3P4-202ENST00000540428 NAA16Q6N069 864 aaPredicted RBP14.75□□□□□ -0.05
CBX3P4-202ENST00000540428 SH3RF3Q8TEJ3 882 aaPredicted RBP14.75□□□□□ -0.05
CBX3P4-202ENST00000540428 CLUAP1Q96AJ1 413 aa14.75□□□□□ -0.05
CBX3P4-202ENST00000540428 ZNF512BQ96KM6 892 aaPredicted RBP14.75□□□□□ -0.05
CBX3P4-202ENST00000540428 TNNQ9UQP3 1299 aa14.75□□□□□ -0.05
CBX3P4-202ENST00000540428 PHIPQ8WWQ0 1821 aa14.75□□□□□ -0.05
CBX3P4-202ENST00000540428 PTPRFP10586 1907 aa14.74□□□□□ -0.05
CBX3P4-202ENST00000540428 ELNP15502 786 aa14.74□□□□□ -0.05
CBX3P4-202ENST00000540428 TNNI3KQ59H18 835 aa14.74□□□□□ -0.05
CBX3P4-202ENST00000540428 TTC39AQ5SRH9 613 aa14.74□□□□□ -0.05
CBX3P4-202ENST00000540428 ZKSCAN2Q63HK3 967 aa14.74□□□□□ -0.05
CBX3P4-202ENST00000540428 CHRDL2Q6WN34 429 aa14.74□□□□□ -0.05
CBX3P4-202ENST00000540428 METTL16Q86W50 562 aaKnown RBP14.74□□□□□ -0.05
CBX3P4-202ENST00000540428 SSH3Q8TE77 659 aa14.74□□□□□ -0.05
CBX3P4-202ENST00000540428 WDR18Q9BV38 432 aa14.74□□□□□ -0.05
CBX3P4-202ENST00000540428 PAK6Q9NQU5 681 aaPredicted RBP14.74□□□□□ -0.05
CBX3P4-202ENST00000540428 GINM1Q9NU53 330 aa14.74□□□□□ -0.05
CBX3P4-202ENST00000540428 NR2E3Q9Y5X4 410 aa14.74□□□□□ -0.05
CBX3P4-202ENST00000540428 FPGT-TNNI3KV9GXZ4 949 aa14.74□□□□□ -0.05
CBX3P4-202ENST00000540428 ASNSP08243 561 aa14.73□□□□□ -0.05
CBX3P4-202ENST00000540428 HMGCS2P54868 508 aa14.73□□□□□ -0.05
CBX3P4-202ENST00000540428 ATP8B2P98198 1209 aa14.73□□□□□ -0.05
CBX3P4-202ENST00000540428 RRP1BQ14684 758 aaKnown RBP14.73□□□□□ -0.05
CBX3P4-202ENST00000540428 FOXP4Q8IVH2 680 aaPredicted RBP14.73□□□□□ -0.05
CBX3P4-202ENST00000540428 TMEM57Q8N5G2 664 aa14.73□□□□□ -0.05
CBX3P4-202ENST00000540428 ASCC2Q9H1I8 757 aaPredicted RBP14.73□□□□□ -0.05
CBX3P4-202ENST00000540428 AATFQ9NY61 560 aaKnown RBP eCLIP14.73□□□□□ -0.05
CBX3P4-202ENST00000540428 MGAMO43451 1857 aa14.73□□□□□ -0.05
CBX3P4-202ENST00000540428 DEFB118Q96PH6 123 aa14.72□□□□□ -0.05
CBX3P4-202ENST00000540428 DBNDD2Q9BQY9 259 aa14.72□□□□□ -0.05
CBX3P4-202ENST00000540428 CRISPLD2Q9H0B8 497 aa14.72□□□□□ -0.05
CBX3P4-202ENST00000540428 MORF4L1Q9UBU8 362 aa14.72□□□□□ -0.05
CBX3P4-202ENST00000540428 FLT1P17948 1338 aa14.71□□□□□ -0.05
CBX3P4-202ENST00000540428 LOC285556D6RIA3 1793 aa14.71□□□□□ -0.05
CBX3P4-202ENST00000540428 C19orf81C9J6K1 198 aa14.71□□□□□ -0.05
CBX3P4-202ENST00000540428 SURF6O75683 361 aaKnown RBP14.71□□□□□ -0.05
CBX3P4-202ENST00000540428 TFRCP02786 760 aaKnown RBP14.71□□□□□ -0.05
CBX3P4-202ENST00000540428 CYP2E1P05181 493 aaPredicted RBP14.71□□□□□ -0.05
CBX3P4-202ENST00000540428 HOXA7P31268 230 aaPredicted RBP14.71□□□□□ -0.05
CBX3P4-202ENST00000540428 BACE1P56817 501 aa14.71□□□□□ -0.05
CBX3P4-202ENST00000540428 OS9Q13438 667 aaPredicted RBP14.71□□□□□ -0.05
CBX3P4-202ENST00000540428 CERS3Q8IU89 383 aa14.71□□□□□ -0.05
CBX3P4-202ENST00000540428 TGFBRAP1Q8WUH2 860 aa14.71□□□□□ -0.05
CBX3P4-202ENST00000540428 PRO3102Q9H379 93 aa14.71□□□□□ -0.05
CBX3P4-202ENST00000540428 SNRKQ9NRH2 765 aa14.71□□□□□ -0.05
CBX3P4-202ENST00000540428 RBM27Q9P2N5 1060 aaKnown RBP14.71□□□□□ -0.05
CBX3P4-202ENST00000540428 GJD2Q9UKL4 321 aa14.71□□□□□ -0.05
CBX3P4-202ENST00000540428 TAOK2Q9UL54 1235 aa14.71□□□□□ -0.05
CBX3P4-202ENST00000540428 NOP58Q9Y2X3 529 aaKnown RBP14.71□□□□□ -0.05
CBX3P4-202ENST00000540428 ZBTB7BO15156 539 aaPredicted RBP14.7□□□□□ -0.06
CBX3P4-202ENST00000540428 HMGCRP04035 888 aa14.7□□□□□ -0.06
CBX3P4-202ENST00000540428 IRX3P78415 501 aaPredicted RBP14.7□□□□□ -0.06
CBX3P4-202ENST00000540428 MTMR2Q13614 643 aa14.7□□□□□ -0.06
CBX3P4-202ENST00000540428 ADGRA1Q86SQ6 560 aa14.7□□□□□ -0.06
CBX3P4-202ENST00000540428 MAPKAPK5Q8IW41 473 aa14.7□□□□□ -0.06
CBX3P4-202ENST00000540428 ANKLE1Q8NAG6 615 aa14.7□□□□□ -0.06
CBX3P4-202ENST00000540428 XRN2Q9H0D6 950 aaKnown RBP eCLIP14.7□□□□□ -0.06
CBX3P4-202ENST00000540428 DNAJC18Q9H819 358 aa14.7□□□□□ -0.06
CBX3P4-202ENST00000540428 TMOD4Q9NZQ9 345 aa14.7□□□□□ -0.06
CBX3P4-202ENST00000540428 A0A1W2PPC1 479 aa14.69□□□□□ -0.06
CBX3P4-202ENST00000540428 TMED8Q6PL24 325 aaPredicted RBP14.69□□□□□ -0.06
CBX3P4-202ENST00000540428 CRACR2BQ8N4Y2 399 aaPredicted RBP14.69□□□□□ -0.06
CBX3P4-202ENST00000540428 TRIM34Q9BYJ4 488 aa14.69□□□□□ -0.06
CBX3P4-202ENST00000540428 MAST2Q6P0Q8 1798 aa14.69□□□□□ -0.06
CBX3P4-202ENST00000540428 RPTORQ8N122 1335 aa14.68□□□□□ -0.06
CBX3P4-202ENST00000540428 CEP290O15078 2479 aa14.68□□□□□ -0.06
CBX3P4-202ENST00000540428 USP17L10C9JJH3 530 aa14.68□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms