RNA–Protein interactions for RNA: ENST00000534106.2

CHMP4A-208, Transcript of charged multivesicular body protein 4A, human

TSL 5

Gene CHMP4A, Length 370 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHMP4A-208	ENST00000534106	AGGF1	Q8N302	714 aa	eCLIP	4.38	□□□□□ -1.71	2e-8	■□□□□ 9
CHMP4A-208	ENST00000534106	TMEM130	Q8N3G9	435 aa		4.38	□□□□□ -1.71
CHMP4A-208	ENST00000534106	SYTL4	Q96C24	671 aa	Predicted RBP	4.38	□□□□□ -1.71
CHMP4A-208	ENST00000534106	SPACA7	Q96KW9	195 aa		4.38	□□□□□ -1.71
CHMP4A-208	ENST00000534106	SRA1	Q9HD15	236 aa	Known RBP	4.38	□□□□□ -1.71
CHMP4A-208	ENST00000534106	NLRP2	Q9NX02	1062 aa		4.38	□□□□□ -1.71
CHMP4A-208	ENST00000534106	STOML1	Q9UBI4	398 aa		4.38	□□□□□ -1.71
CHMP4A-208	ENST00000534106	RAX	Q9Y2V3	346 aa		4.38	□□□□□ -1.71
CHMP4A-208	ENST00000534106	GTF3C3	Q9Y5Q9	886 aa		4.38	□□□□□ -1.71
CHMP4A-208	ENST00000534106	AATK	Q6ZMQ8	1374 aa		4.38	□□□□□ -1.71
CHMP4A-208	ENST00000534106	FAM177B	A6PVY3	158 aa		4.37	□□□□□ -1.71
CHMP4A-208	ENST00000534106	OPLAH	O14841	1288 aa		4.37	□□□□□ -1.71
CHMP4A-208	ENST00000534106	IGLV1-40	P01703	118 aa		4.37	□□□□□ -1.71
CHMP4A-208	ENST00000534106	HSPA1A	P0DMV8	641 aa	Known RBP	4.37	□□□□□ -1.71
CHMP4A-208	ENST00000534106	HSPA1B	P0DMV9	641 aa	Known RBP	4.37	□□□□□ -1.71
CHMP4A-208	ENST00000534106	TXK	P42681	527 aa		4.37	□□□□□ -1.71
CHMP4A-208	ENST00000534106	CDCA8	Q53HL2	280 aa		4.37	□□□□□ -1.71
CHMP4A-208	ENST00000534106	ARHGAP27	Q6ZUM4	889 aa		4.37	□□□□□ -1.71
CHMP4A-208	ENST00000534106	MYO19	Q96H55	970 aa		4.37	□□□□□ -1.71
CHMP4A-208	ENST00000534106	MUC3B	Q9H195	1237 aa		4.37	□□□□□ -1.71
CHMP4A-208	ENST00000534106	GOLGA2P5	Q9HBQ8	144 aa		4.37	□□□□□ -1.71
CHMP4A-208	ENST00000534106	PPME1	Q9Y570	386 aa		4.37	□□□□□ -1.71
CHMP4A-208	ENST00000534106	CD2AP	Q9Y5K6	639 aa		4.37	□□□□□ -1.71
CHMP4A-208	ENST00000534106	ALS2	Q96Q42	1657 aa		4.37	□□□□□ -1.71
CHMP4A-208	ENST00000534106	IGSF1	Q8N6C5	1336 aa		4.37	□□□□□ -1.71
CHMP4A-208	ENST00000534106	PEAK1	Q9H792	1746 aa		4.37	□□□□□ -1.71
CHMP4A-208	ENST00000534106	BCL9	O00512	1426 aa		4.37	□□□□□ -1.71
CHMP4A-208	ENST00000534106	CHD4	Q14839	1912 aa		4.36	□□□□□ -1.71
CHMP4A-208	ENST00000534106		A0A0G2JLW4	131 aa		4.36	□□□□□ -1.71
CHMP4A-208	ENST00000534106	LINC01387	J3KSC0	135 aa		4.36	□□□□□ -1.71
CHMP4A-208	ENST00000534106	DHX15	O43143	795 aa	Known RBP	4.36	□□□□□ -1.71
CHMP4A-208	ENST00000534106	COBL	O75128	1261 aa		4.36	□□□□□ -1.71
CHMP4A-208	ENST00000534106	EGFR	P00533	1210 aa		4.36	□□□□□ -1.71
CHMP4A-208	ENST00000534106	BRD2	P25440	801 aa	Known RBP	4.36	□□□□□ -1.71
CHMP4A-208	ENST00000534106	WEE1	P30291	646 aa		4.36	□□□□□ -1.71
CHMP4A-208	ENST00000534106	CDC25B	P30305	580 aa		4.36	□□□□□ -1.71
CHMP4A-208	ENST00000534106	SETDB1	Q15047	1291 aa		4.36	□□□□□ -1.71
CHMP4A-208	ENST00000534106	CEP135	Q66GS9	1140 aa		4.36	□□□□□ -1.71
CHMP4A-208	ENST00000534106	FAM117B	Q6P1L5	589 aa		4.36	□□□□□ -1.71
CHMP4A-208	ENST00000534106	CACTIN-AS1	Q8N1I8	211 aa		4.36	□□□□□ -1.71
CHMP4A-208	ENST00000534106	KRTAP4-12	Q9BQ66	201 aa		4.36	□□□□□ -1.71
CHMP4A-208	ENST00000534106	CCNL1	Q9UK58	526 aa	Predicted RBP	4.36	□□□□□ -1.71
CHMP4A-208	ENST00000534106	LRFN2	Q9ULH4	789 aa		4.36	□□□□□ -1.71
CHMP4A-208	ENST00000534106	TRIM33	Q9UPN9	1127 aa		4.36	□□□□□ -1.71
CHMP4A-208	ENST00000534106	POLR3A	O14802	1390 aa	Predicted RBP	4.36	□□□□□ -1.71
CHMP4A-208	ENST00000534106	PPL	O60437	1756 aa		4.35	□□□□□ -1.71
CHMP4A-208	ENST00000534106	SMNDC1	O75940	238 aa	Known RBP eCLIP	4.35	□□□□□ -1.71
CHMP4A-208	ENST00000534106	IL2RB	P14784	551 aa		4.35	□□□□□ -1.71
CHMP4A-208	ENST00000534106	SOX18	P35713	384 aa		4.35	□□□□□ -1.71
CHMP4A-208	ENST00000534106	SCNN1A	P37088	669 aa		4.35	□□□□□ -1.71
CHMP4A-208	ENST00000534106	GRIK1	P39086	918 aa		4.35	□□□□□ -1.71
CHMP4A-208	ENST00000534106	SRPK2	P78362	688 aa	Known RBP	4.35	□□□□□ -1.71
CHMP4A-208	ENST00000534106	TTC39B	Q5VTQ0	682 aa	Predicted RBP	4.35	□□□□□ -1.71
CHMP4A-208	ENST00000534106	C9orf131	Q5VYM1	1079 aa		4.35	□□□□□ -1.71
CHMP4A-208	ENST00000534106	TXNDC11	Q6PKC3	985 aa		4.35	□□□□□ -1.71
CHMP4A-208	ENST00000534106	ACAD11	Q709F0	780 aa		4.35	□□□□□ -1.71
CHMP4A-208	ENST00000534106	LTV1	Q96GA3	475 aa	Predicted RBP	4.35	□□□□□ -1.71
CHMP4A-208	ENST00000534106	PRIMPOL	Q96LW4	560 aa		4.35	□□□□□ -1.71
CHMP4A-208	ENST00000534106	CEP41	Q9BYV8	373 aa		4.35	□□□□□ -1.71
CHMP4A-208	ENST00000534106	LACRT	Q9GZZ8	138 aa		4.35	□□□□□ -1.71
CHMP4A-208	ENST00000534106	FAM13B	Q9NYF5	915 aa		4.35	□□□□□ -1.71
CHMP4A-208	ENST00000534106	KCNMB2	Q9Y691	235 aa		4.35	□□□□□ -1.71
CHMP4A-208	ENST00000534106	BRD4	O60885	1362 aa	Predicted RBP	4.35	□□□□□ -1.71
CHMP4A-208	ENST00000534106	TULP4	Q9NRJ4	1543 aa		4.35	□□□□□ -1.71
CHMP4A-208	ENST00000534106	KIF1B	O60333	1816 aa		4.35	□□□□□ -1.71
CHMP4A-208	ENST00000534106	SART1	O43290	800 aa	Known RBP	4.34	□□□□□ -1.71
CHMP4A-208	ENST00000534106	TGFB1	P01137	390 aa		4.34	□□□□□ -1.71
CHMP4A-208	ENST00000534106	FBLN1	P23142	703 aa		4.34	□□□□□ -1.71
CHMP4A-208	ENST00000534106	CDC27	P30260	824 aa		4.34	□□□□□ -1.71
CHMP4A-208	ENST00000534106	CD68	P34810	354 aa	Predicted RBP	4.34	□□□□□ -1.71
CHMP4A-208	ENST00000534106	HYAL2	Q12891	473 aa		4.34	□□□□□ -1.71
CHMP4A-208	ENST00000534106	COX20	Q5RI15	118 aa		4.34	□□□□□ -1.71
CHMP4A-208	ENST00000534106	ZC3HAV1	Q7Z2W4	902 aa	Known RBP	4.34	□□□□□ -1.71
CHMP4A-208	ENST00000534106	ANKRD24	Q8TF21	1146 aa		4.34	□□□□□ -1.71
CHMP4A-208	ENST00000534106	PIK3R5	Q8WYR1	880 aa		4.34	□□□□□ -1.71
CHMP4A-208	ENST00000534106	UTP4	Q969X6	686 aa	Known RBP	4.34	□□□□□ -1.71
CHMP4A-208	ENST00000534106	FNDC3A	Q9Y2H6	1198 aa	Known RBP	4.34	□□□□□ -1.71
CHMP4A-208	ENST00000534106	EIF3A	Q14152	1382 aa	Known RBP	4.34	□□□□□ -1.71
CHMP4A-208	ENST00000534106	LMO7	Q8WWI1	1683 aa		4.34	□□□□□ -1.71
CHMP4A-208	ENST00000534106	CRYBG1	Q9Y4K1	1723 aa		4.34	□□□□□ -1.71
CHMP4A-208	ENST00000534106	IFT172	Q9UG01	1749 aa		4.33	□□□□□ -1.72
CHMP4A-208	ENST00000534106	TTC21B	Q7Z4L5	1316 aa		4.33	□□□□□ -1.72
CHMP4A-208	ENST00000534106		A6NJR5	290 aa		4.33	□□□□□ -1.72
CHMP4A-208	ENST00000534106	FOXN1	O15353	648 aa		4.33	□□□□□ -1.72
CHMP4A-208	ENST00000534106	PRMT3	O60678	531 aa		4.33	□□□□□ -1.72
CHMP4A-208	ENST00000534106	DPEP1	P16444	411 aa		4.33	□□□□□ -1.72
CHMP4A-208	ENST00000534106	TAL1	P17542	331 aa	Predicted RBP	4.33	□□□□□ -1.72
CHMP4A-208	ENST00000534106	CD97	P48960	835 aa		4.33	□□□□□ -1.72
CHMP4A-208	ENST00000534106	GP2	P55259	537 aa	Known RBP	4.33	□□□□□ -1.72
CHMP4A-208	ENST00000534106	FKBP5	Q13451	457 aa	Predicted RBP	4.33	□□□□□ -1.72
CHMP4A-208	ENST00000534106	DUOXA2	Q1HG44	320 aa		4.33	□□□□□ -1.72
CHMP4A-208	ENST00000534106	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	4.33	□□□□□ -1.72
CHMP4A-208	ENST00000534106	C16orf71	Q8IYS4	520 aa	Predicted RBP	4.33	□□□□□ -1.72
CHMP4A-208	ENST00000534106	UBL7	Q96S82	380 aa	Predicted RBP	4.33	□□□□□ -1.72
CHMP4A-208	ENST00000534106	KCNF1	Q9H3M0	494 aa		4.33	□□□□□ -1.72
CHMP4A-208	ENST00000534106	NOVA2	Q9UNW9	492 aa	Known RBP	4.33	□□□□□ -1.72
CHMP4A-208	ENST00000534106	PARP4	Q9UKK3	1724 aa	Known RBP	4.32	□□□□□ -1.72
CHMP4A-208	ENST00000534106	LRRC37A3	O60309	1634 aa		4.32	□□□□□ -1.72
CHMP4A-208	ENST00000534106	ADGRB1	O14514	1584 aa		4.32	□□□□□ -1.72
CHMP4A-208	ENST00000534106	PPIP5K1	Q6PFW1	1433 aa		4.32	□□□□□ -1.72

Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms