RNA–Protein interactions for RNA: ENST00000531474.2

NXF1-209, Transcript of nuclear RNA export factor 1, human

TSL 3

Gene NXF1, Length 548 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NXF1-209	ENST00000531474	NBPF12	Q5TAG4	269 aa	Predicted RBP	11.2	□□□□□ -0.62
NXF1-209	ENST00000531474	CLEC17A	Q6ZS10	378 aa		11.2	□□□□□ -0.62
NXF1-209	ENST00000531474	ZSCAN31	Q96LW9	406 aa	Predicted RBP	11.2	□□□□□ -0.62
NXF1-209	ENST00000531474	RPAP1	Q9BWH6	1393 aa	Predicted RBP	11.19	□□□□□ -0.62
NXF1-209	ENST00000531474	CELF2	O95319	508 aa	Known RBP	11.19	□□□□□ -0.62
NXF1-209	ENST00000531474	CD2BP2	O95400	341 aa	Known RBP	11.19	□□□□□ -0.62
NXF1-209	ENST00000531474	CUL4A	Q13619	759 aa		11.19	□□□□□ -0.62
NXF1-209	ENST00000531474	ANKRD1	Q15327	319 aa		11.19	□□□□□ -0.62
NXF1-209	ENST00000531474	SUPT20HL1	Q3ZLR7	823 aa		11.19	□□□□□ -0.62
NXF1-209	ENST00000531474	SH3BP5L	Q7L8J4	393 aa		11.19	□□□□□ -0.62
NXF1-209	ENST00000531474	ZNF589	Q86UQ0	364 aa	Predicted RBP	11.19	□□□□□ -0.62
NXF1-209	ENST00000531474	TEPSIN	Q96N21	525 aa		11.19	□□□□□ -0.62
NXF1-209	ENST00000531474	CSRNP1	Q96S65	589 aa		11.19	□□□□□ -0.62
NXF1-209	ENST00000531474	DCP1A	Q9NPI6	582 aa	Predicted RBP	11.19	□□□□□ -0.62
NXF1-209	ENST00000531474	ATP8A2	Q9NTI2	1148 aa		11.19	□□□□□ -0.62
NXF1-209	ENST00000531474	MCM9	Q9NXL9	1143 aa		11.19	□□□□□ -0.62
NXF1-209	ENST00000531474	PALD1	Q9ULE6	856 aa		11.19	□□□□□ -0.62
NXF1-209	ENST00000531474	SNX14	Q9Y5W7	946 aa		11.19	□□□□□ -0.62
NXF1-209	ENST00000531474	CYP46A1	Q9Y6A2	500 aa		11.19	□□□□□ -0.62
NXF1-209	ENST00000531474	ATRNL1	Q5VV63	1379 aa		11.18	□□□□□ -0.62
NXF1-209	ENST00000531474	PASK	Q96RG2	1323 aa		11.18	□□□□□ -0.62
NXF1-209	ENST00000531474	DDTL	A6NHG4	134 aa	Predicted RBP	11.18	□□□□□ -0.62
NXF1-209	ENST00000531474	GSG1L2	A8MUP6	293 aa		11.18	□□□□□ -0.62
NXF1-209	ENST00000531474	HLA-DOA	P06340	250 aa		11.18	□□□□□ -0.62
NXF1-209	ENST00000531474	TDO2	P48775	406 aa		11.18	□□□□□ -0.62
NXF1-209	ENST00000531474	PRKG1	Q13976	671 aa		11.18	□□□□□ -0.62
NXF1-209	ENST00000531474	TTLL12	Q14166	644 aa	Predicted RBP	11.18	□□□□□ -0.62
NXF1-209	ENST00000531474	VPS53	Q5VIR6	699 aa		11.18	□□□□□ -0.62
NXF1-209	ENST00000531474	HOOK2	Q96ED9	719 aa		11.18	□□□□□ -0.62
NXF1-209	ENST00000531474	TMX3	Q96JJ7	454 aa		11.18	□□□□□ -0.62
NXF1-209	ENST00000531474	NACAP1	Q9BZK3	213 aa		11.18	□□□□□ -0.62
NXF1-209	ENST00000531474	ALDH8A1	Q9H2A2	487 aa	Predicted RBP	11.18	□□□□□ -0.62
NXF1-209	ENST00000531474	LIMCH1	Q9UPQ0	1083 aa		11.18	□□□□□ -0.62
NXF1-209	ENST00000531474		U3KPZ7	1027 aa	Predicted RBP	11.18	□□□□□ -0.62
NXF1-209	ENST00000531474	SSC5D	A1L4H1	1573 aa		11.18	□□□□□ -0.62
NXF1-209	ENST00000531474	COL2A1	P02458	1487 aa	Predicted RBP	11.18	□□□□□ -0.62
NXF1-209	ENST00000531474	PATL2	C9JE40	543 aa	Known RBP	11.17	□□□□□ -0.62
NXF1-209	ENST00000531474	POLR3D	P05423	398 aa	Predicted RBP	11.17	□□□□□ -0.62
NXF1-209	ENST00000531474	CYP2D6	P10635	497 aa		11.17	□□□□□ -0.62
NXF1-209	ENST00000531474	GSE1	Q14687	1217 aa		11.17	□□□□□ -0.62
NXF1-209	ENST00000531474	DCAF15	Q66K64	600 aa		11.17	□□□□□ -0.62
NXF1-209	ENST00000531474	AMOTL1	Q8IY63	956 aa		11.17	□□□□□ -0.62
NXF1-209	ENST00000531474	CHMP4C	Q96CF2	233 aa		11.17	□□□□□ -0.62
NXF1-209	ENST00000531474	TRIM34	Q9BYJ4	488 aa		11.17	□□□□□ -0.62
NXF1-209	ENST00000531474	NAPB	Q9H115	298 aa		11.17	□□□□□ -0.62
NXF1-209	ENST00000531474	IL25	Q9H293	177 aa		11.17	□□□□□ -0.62
NXF1-209	ENST00000531474	DHX36	Q9H2U1	1008 aa	Known RBP	11.17	□□□□□ -0.62
NXF1-209	ENST00000531474	GBA2	Q9HCG7	927 aa	Predicted RBP	11.17	□□□□□ -0.62
NXF1-209	ENST00000531474	ZSWIM6	Q9HCJ5	1215 aa		11.17	□□□□□ -0.62
NXF1-209	ENST00000531474	EPB41L4A	Q9HCS5	686 aa	Predicted RBP	11.17	□□□□□ -0.62
NXF1-209	ENST00000531474	SH2B1	Q9NRF2	756 aa	Predicted RBP	11.17	□□□□□ -0.62
NXF1-209	ENST00000531474	MKRN1	Q9UHC7	482 aa	Known RBP	11.17	□□□□□ -0.62
NXF1-209	ENST00000531474	ZSCAN21	Q9Y5A6	473 aa	Predicted RBP	11.17	□□□□□ -0.62
NXF1-209	ENST00000531474	RBM8A	Q9Y5S9	174 aa	Known RBP	11.17	□□□□□ -0.62
NXF1-209	ENST00000531474	CYP2D7	A0A087X1C5	515 aa		11.16	□□□□□ -0.62
NXF1-209	ENST00000531474	MINDY4B	A8MYZ0	360 aa		11.16	□□□□□ -0.62
NXF1-209	ENST00000531474	USP17L12	C9JPN9	530 aa		11.16	□□□□□ -0.62
NXF1-209	ENST00000531474	USP17L21	D6R901	530 aa		11.16	□□□□□ -0.62
NXF1-209	ENST00000531474	PPP1R12B	O60237	982 aa	Predicted RBP	11.16	□□□□□ -0.62
NXF1-209	ENST00000531474	HMGB1	P09429	215 aa	Known RBP	11.16	□□□□□ -0.62
NXF1-209	ENST00000531474	C1QTNF8	P60827	252 aa		11.16	□□□□□ -0.62
NXF1-209	ENST00000531474	PTH1R	Q03431	593 aa		11.16	□□□□□ -0.62
NXF1-209	ENST00000531474	MAPK8IP2	Q13387	824 aa	Predicted RBP	11.16	□□□□□ -0.62
NXF1-209	ENST00000531474	CST9	Q5W186	159 aa		11.16	□□□□□ -0.62
NXF1-209	ENST00000531474	CREB3L3	Q68CJ9	461 aa		11.16	□□□□□ -0.62
NXF1-209	ENST00000531474	GIMAP6	Q6P9H5	292 aa		11.16	□□□□□ -0.62
NXF1-209	ENST00000531474	MIGA2	Q7L4E1	593 aa		11.16	□□□□□ -0.62
NXF1-209	ENST00000531474	TTC6	Q86TZ1	520 aa		11.16	□□□□□ -0.62
NXF1-209	ENST00000531474	IFNL3	Q8IZI9	196 aa		11.16	□□□□□ -0.62
NXF1-209	ENST00000531474	CRACR2B	Q8N4Y2	399 aa	Predicted RBP	11.16	□□□□□ -0.62
NXF1-209	ENST00000531474	C2orf69	Q8N8R5	385 aa		11.16	□□□□□ -0.62
NXF1-209	ENST00000531474	TNPO1	Q92973	898 aa	Known RBP	11.16	□□□□□ -0.62
NXF1-209	ENST00000531474	PI4KB	Q9UBF8	816 aa		11.16	□□□□□ -0.62
NXF1-209	ENST00000531474	ARPP21	Q9UBL0	812 aa	Predicted RBP	11.16	□□□□□ -0.62
NXF1-209	ENST00000531474	ANGEL1	Q9UNK9	670 aa	Known RBP	11.16	□□□□□ -0.62
NXF1-209	ENST00000531474	FZD1	Q9UP38	647 aa		11.16	□□□□□ -0.62
NXF1-209	ENST00000531474	NAV1	Q8NEY1	1877 aa		11.16	□□□□□ -0.62
NXF1-209	ENST00000531474	FOCAD	Q5VW36	1801 aa		11.15	□□□□□ -0.62
NXF1-209	ENST00000531474	TMEM88B	A6NKF7	163 aa		11.15	□□□□□ -0.62
NXF1-209	ENST00000531474	FAM196B	A6NMK8	535 aa		11.15	□□□□□ -0.62
NXF1-209	ENST00000531474	FOXP2	O15409	715 aa		11.15	□□□□□ -0.62
NXF1-209	ENST00000531474	SLURP2	P0DP57	97 aa		11.15	□□□□□ -0.62
NXF1-209	ENST00000531474	HSPD1	P10809	573 aa	Known RBP	11.15	□□□□□ -0.62
NXF1-209	ENST00000531474	DEK	P35659	375 aa	Known RBP	11.15	□□□□□ -0.62
NXF1-209	ENST00000531474	PLCD1	P51178	756 aa		11.15	□□□□□ -0.62
NXF1-209	ENST00000531474	APLP1	P51693	650 aa		11.15	□□□□□ -0.62
NXF1-209	ENST00000531474	CTR9	Q6PD62	1173 aa		11.15	□□□□□ -0.62
NXF1-209	ENST00000531474	MOB2	Q70IA6	237 aa		11.15	□□□□□ -0.62
NXF1-209	ENST00000531474	RUFY3	Q7L099	469 aa		11.15	□□□□□ -0.62
NXF1-209	ENST00000531474	ARMC9	Q7Z3E5	817 aa		11.15	□□□□□ -0.62
NXF1-209	ENST00000531474	TTC14	Q96N46	770 aa		11.15	□□□□□ -0.62
NXF1-209	ENST00000531474	DSCC1	Q9BVC3	393 aa		11.15	□□□□□ -0.62
NXF1-209	ENST00000531474	ZNF341	Q9BYN7	854 aa		11.15	□□□□□ -0.62
NXF1-209	ENST00000531474	XPO5	Q9HAV4	1204 aa	Known RBP eCLIP	11.15	□□□□□ -0.62
NXF1-209	ENST00000531474	PDRG1	Q9NUG6	133 aa		11.15	□□□□□ -0.62
NXF1-209	ENST00000531474	CTNNA3	Q9UI47	895 aa		11.15	□□□□□ -0.62
NXF1-209	ENST00000531474	ABT1	Q9ULW3	272 aa	Known RBP	11.15	□□□□□ -0.62
NXF1-209	ENST00000531474	DDX60L	Q5H9U9	1706 aa	Known RBP	11.15	□□□□□ -0.63
NXF1-209	ENST00000531474	CDK5RAP2	Q96SN8	1893 aa		11.15	□□□□□ -0.63
NXF1-209	ENST00000531474	PAPPA2	Q9BXP8	1791 aa		11.14	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms