RNA–Protein interactions for RNA: ENST00000528402.5

ECHDC1-220, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

TSL 1 (best) BASIC

Gene ECHDC1, Length 1,449 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-220ENST00000528402 ZNF654Q8IZM8 581 aa17.15■□□□□ 0.34
ECHDC1-220ENST00000528402 USP28Q96RU2 1077 aa17.15■□□□□ 0.34
ECHDC1-220ENST00000528402 FUCA2Q9BTY2 467 aa17.15■□□□□ 0.34
ECHDC1-220ENST00000528402 TMX4Q9H1E5 349 aaPredicted RBP17.15■□□□□ 0.34
ECHDC1-220ENST00000528402 TNMDQ9H2S6 317 aa17.15■□□□□ 0.34
ECHDC1-220ENST00000528402 CLSTN2Q9H4D0 955 aa17.15■□□□□ 0.34
ECHDC1-220ENST00000528402 ZNF287Q9HBT7 754 aa17.15■□□□□ 0.34
ECHDC1-220ENST00000528402 TNKSO95271 1327 aa17.15■□□□□ 0.34
ECHDC1-220ENST00000528402 RGPD3A6NKT7 1758 aaPredicted RBP17.15■□□□□ 0.34
ECHDC1-220ENST00000528402 RGPD4Q7Z3J3 1758 aa17.15■□□□□ 0.34
ECHDC1-220ENST00000528402 MYH2Q9UKX2 1941 aa17.14■□□□□ 0.34
ECHDC1-220ENST00000528402 DDAH1O94760 285 aa17.14■□□□□ 0.33
ECHDC1-220ENST00000528402 GUCY1B3Q02153 619 aa17.14■□□□□ 0.33
ECHDC1-220ENST00000528402 SAFBQ15424 915 aaKnown RBP eCLIP17.14■□□□□ 0.33
ECHDC1-220ENST00000528402 KRT40Q6A162 431 aa17.14■□□□□ 0.33
ECHDC1-220ENST00000528402 ADALQ6DHV7 355 aa17.14■□□□□ 0.33
ECHDC1-220ENST00000528402 CCDC73Q6ZRK6 1079 aa17.14■□□□□ 0.33
ECHDC1-220ENST00000528402 NKX2-3Q8TAU0 364 aa17.14■□□□□ 0.33
ECHDC1-220ENST00000528402 TBC1D16Q8TBP0 767 aa17.14■□□□□ 0.33
ECHDC1-220ENST00000528402 PDLIM2Q96JY6 352 aa17.14■□□□□ 0.33
ECHDC1-220ENST00000528402 SENP2Q9HC62 589 aa17.14■□□□□ 0.33
ECHDC1-220ENST00000528402 DACT1Q9NYF0 836 aa17.14■□□□□ 0.33
ECHDC1-220ENST00000528402 ATP6V0A2Q9Y487 856 aa17.14■□□□□ 0.33
ECHDC1-220ENST00000528402 FAM205AQ6ZU69 1335 aa17.14■□□□□ 0.33
ECHDC1-220ENST00000528402 LRRC37AA6NMS7 1700 aa17.14■□□□□ 0.33
ECHDC1-220ENST00000528402 DLEC1Q9Y238 1755 aa17.14■□□□□ 0.33
ECHDC1-220ENST00000528402 PPEF1O14829 653 aaPredicted RBP17.13■□□□□ 0.33
ECHDC1-220ENST00000528402 XBP1P17861 261 aa17.13■□□□□ 0.33
ECHDC1-220ENST00000528402 LIG1P18858 919 aa17.13■□□□□ 0.33
ECHDC1-220ENST00000528402 U2AF2P26368 475 aaKnown RBP eCLIP17.13■□□□□ 0.338e-7■■■■□ 25.7
ECHDC1-220ENST00000528402 USP5P45974 858 aa17.13■□□□□ 0.33
ECHDC1-220ENST00000528402 FOSBP53539 338 aa17.13■□□□□ 0.33
ECHDC1-220ENST00000528402 GNL2Q13823 731 aaKnown RBP17.13■□□□□ 0.33
ECHDC1-220ENST00000528402 IFIT1BQ5T764 474 aaKnown RBP17.13■□□□□ 0.33
ECHDC1-220ENST00000528402 ILDR1Q86SU0 546 aaPredicted RBP17.13■□□□□ 0.33
ECHDC1-220ENST00000528402 CRACR2BQ8N4Y2 399 aaPredicted RBP17.13■□□□□ 0.33
ECHDC1-220ENST00000528402 JMYQ8N9B5 988 aa17.13■□□□□ 0.33
ECHDC1-220ENST00000528402 LINC00301Q8NCQ3 95 aa17.13■□□□□ 0.33
ECHDC1-220ENST00000528402 SLC26A6Q9BXS9 759 aa17.13■□□□□ 0.33
ECHDC1-220ENST00000528402 RNF26Q9BY78 433 aaPredicted RBP17.13■□□□□ 0.33
ECHDC1-220ENST00000528402 COA1Q9GZY4 146 aa17.13■□□□□ 0.33
ECHDC1-220ENST00000528402 PARP3Q9Y6F1 533 aa17.13■□□□□ 0.33
ECHDC1-220ENST00000528402 RANBP6O60518 1105 aaKnown RBP17.13■□□□□ 0.33
ECHDC1-220ENST00000528402 AKAP17AQ02040 695 aaKnown RBP17.13■□□□□ 0.33
ECHDC1-220ENST00000528402 STK38Q15208 465 aa17.13■□□□□ 0.33
ECHDC1-220ENST00000528402 SF3A1Q15459 793 aaKnown RBP17.13■□□□□ 0.33
ECHDC1-220ENST00000528402 COL23A1Q86Y22 540 aaPredicted RBP17.13■□□□□ 0.33
ECHDC1-220ENST00000528402 RAB11FIP4Q86YS3 637 aa17.13■□□□□ 0.33
ECHDC1-220ENST00000528402 CCAR1Q8IX12 1150 aaKnown RBP17.13■□□□□ 0.33
ECHDC1-220ENST00000528402 MKRN1Q9UHC7 482 aaKnown RBP17.13■□□□□ 0.33
ECHDC1-220ENST00000528402 MROH7-TTC4A0A0A0MT08 1334 aa17.12■□□□□ 0.33
ECHDC1-220ENST00000528402 GPR75-ASB3A0A0A6YYF3 556 aa17.12■□□□□ 0.33
ECHDC1-220ENST00000528402 SRGNP10124 158 aa17.12■□□□□ 0.33
ECHDC1-220ENST00000528402 ME1P48163 572 aa17.12■□□□□ 0.33
ECHDC1-220ENST00000528402 C12orf60Q5U649 245 aa17.12■□□□□ 0.33
ECHDC1-220ENST00000528402 ANO1Q5XXA6 986 aa17.12■□□□□ 0.33
ECHDC1-220ENST00000528402 MAP3K14Q99558 947 aa17.12■□□□□ 0.33
ECHDC1-220ENST00000528402 ZKSCAN3Q9BRR0 538 aa17.12■□□□□ 0.33
ECHDC1-220ENST00000528402 MCM9Q9NXL9 1143 aa17.12■□□□□ 0.33
ECHDC1-220ENST00000528402 ROBO3Q96MS0 1386 aa17.11■□□□□ 0.33
ECHDC1-220ENST00000528402 SPTLC2O15270 562 aa17.11■□□□□ 0.33
ECHDC1-220ENST00000528402 PRPF3O43395 683 aaKnown RBP17.11■□□□□ 0.33
ECHDC1-220ENST00000528402 RXRAP19793 462 aa17.11■□□□□ 0.33
ECHDC1-220ENST00000528402 FAM160A1Q05DH4 1040 aa17.11■□□□□ 0.33
ECHDC1-220ENST00000528402 SASS6Q6UVJ0 657 aa17.11■□□□□ 0.33
ECHDC1-220ENST00000528402 NBPF11Q86T75 865 aa17.11■□□□□ 0.33
ECHDC1-220ENST00000528402 DGKHQ86XP1 1220 aa17.11■□□□□ 0.33
ECHDC1-220ENST00000528402 ENAHQ8N8S7 591 aaPredicted RBP17.11■□□□□ 0.33
ECHDC1-220ENST00000528402 ANKS1AQ92625 1134 aa17.11■□□□□ 0.33
ECHDC1-220ENST00000528402 PHKBQ93100 1093 aa17.11■□□□□ 0.33
ECHDC1-220ENST00000528402 MASTLQ96GX5 879 aa17.11■□□□□ 0.33
ECHDC1-220ENST00000528402 FOXP1Q9H334 677 aaPredicted RBP17.11■□□□□ 0.33
ECHDC1-220ENST00000528402 POLLQ9UGP5 575 aa17.11■□□□□ 0.33
ECHDC1-220ENST00000528402 C6orf229H3BNL8 230 aa17.1■□□□□ 0.33
ECHDC1-220ENST00000528402 PPP6R2O75170 966 aa17.1■□□□□ 0.33
ECHDC1-220ENST00000528402 POLR3DP05423 398 aaPredicted RBP17.1■□□□□ 0.33
ECHDC1-220ENST00000528402 CEBPZQ03701 1054 aaKnown RBP17.1■□□□□ 0.33
ECHDC1-220ENST00000528402 SLC39A14Q15043 492 aa17.1■□□□□ 0.33
ECHDC1-220ENST00000528402 ZNF827Q17R98 1081 aa17.1■□□□□ 0.33
ECHDC1-220ENST00000528402 OTUD7BQ6GQQ9 843 aa17.1■□□□□ 0.33
ECHDC1-220ENST00000528402 CCDC144CPQ8IYA2 1237 aa17.1■□□□□ 0.33
ECHDC1-220ENST00000528402 NUP133Q8WUM0 1156 aa17.1■□□□□ 0.33
ECHDC1-220ENST00000528402 MRPS27Q92552 414 aaKnown RBP17.1■□□□□ 0.33
ECHDC1-220ENST00000528402 MYL10Q9BUA6 226 aa17.1■□□□□ 0.33
ECHDC1-220ENST00000528402 GNL3Q9BVP2 549 aaKnown RBP eCLIP17.1■□□□□ 0.33
ECHDC1-220ENST00000528402 TCP11L1Q9NUJ3 509 aa17.1■□□□□ 0.33
ECHDC1-220ENST00000528402 PCDHA7Q9UN72 937 aa17.1■□□□□ 0.33
ECHDC1-220ENST00000528402 ANKRD31Q8N7Z5 1873 aa17.1■□□□□ 0.33
ECHDC1-220ENST00000528402 LTBP1Q14766 1721 aa17.1■□□□□ 0.33
ECHDC1-220ENST00000528402 KINO60870 393 aaKnown RBP17.09■□□□□ 0.33
ECHDC1-220ENST00000528402 NR1I2O75469 434 aa17.09■□□□□ 0.33
ECHDC1-220ENST00000528402 MMP1P03956 469 aa17.09■□□□□ 0.33
ECHDC1-220ENST00000528402 TPRNQ4KMQ1 711 aa17.09■□□□□ 0.33
ECHDC1-220ENST00000528402 MPNDQ8N594 471 aa17.09■□□□□ 0.33
ECHDC1-220ENST00000528402 CTCFLQ8NI51 663 aaPredicted RBP17.09■□□□□ 0.33
ECHDC1-220ENST00000528402 EYA3Q99504 573 aa17.09■□□□□ 0.33
ECHDC1-220ENST00000528402 ZC3H12CQ9C0D7 883 aaKnown RBP17.09■□□□□ 0.33
ECHDC1-220ENST00000528402 MYH6P13533 1939 aa17.09■□□□□ 0.33
ECHDC1-220ENST00000528402 TSPY2A6NKD2 308 aa17.08■□□□□ 0.32
ECHDC1-220ENST00000528402 PPFIA3O75145 1194 aa17.08■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms