RNA–Protein interactions for RNA: ENST00000520602.5

MCF2-209, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,945 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-209ENST00000520602 WDR66Q8TBY9 1149 aa11.63□□□□□ -0.55
MCF2-209ENST00000520602 ADAMTSL3P82987 1691 aa11.63□□□□□ -0.55
MCF2-209ENST00000520602 BCL9O00512 1426 aa11.63□□□□□ -0.55
MCF2-209ENST00000520602 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.63□□□□□ -0.55
MCF2-209ENST00000520602 RPS6KA4O75676 772 aa11.63□□□□□ -0.55
MCF2-209ENST00000520602 PIK3AP1Q6ZUJ8 805 aa11.63□□□□□ -0.55
MCF2-209ENST00000520602 SLF2Q8IX21 1173 aa11.63□□□□□ -0.55
MCF2-209ENST00000520602 STAMQ92783 540 aa11.63□□□□□ -0.55
MCF2-209ENST00000520602 MECOMQ03112 1051 aa11.62□□□□□ -0.55
MCF2-209ENST00000520602 SLC39A14Q15043 492 aa11.62□□□□□ -0.55
MCF2-209ENST00000520602 KLHL34Q8N239 644 aa11.62□□□□□ -0.55
MCF2-209ENST00000520602 IL17RAQ96F46 866 aa11.62□□□□□ -0.55
MCF2-209ENST00000520602 POLR3EQ9NVU0 708 aa11.62□□□□□ -0.55
MCF2-209ENST00000520602 GGA1Q9UJY5 639 aa11.62□□□□□ -0.55
MCF2-209ENST00000520602 CUTAO60888 179 aa11.62□□□□□ -0.55
MCF2-209ENST00000520602 CMA1P23946 247 aa11.62□□□□□ -0.55
MCF2-209ENST00000520602 LIFRP42702 1097 aa11.62□□□□□ -0.55
MCF2-209ENST00000520602 DIXDC1Q155Q3 683 aa11.62□□□□□ -0.55
MCF2-209ENST00000520602 CCDC96Q2M329 555 aa11.62□□□□□ -0.55
MCF2-209ENST00000520602 ARHGEF1Q92888 912 aaKnown RBP11.62□□□□□ -0.55
MCF2-209ENST00000520602 LY9Q9HBG7 655 aa11.62□□□□□ -0.55
MCF2-209ENST00000520602 NARFQ9UHQ1 456 aa11.62□□□□□ -0.55
MCF2-209ENST00000520602 SPATA31A5Q5VU36 1347 aa11.62□□□□□ -0.55
MCF2-209ENST00000520602 SPATA31A7Q8IWB4 1347 aa11.62□□□□□ -0.55
MCF2-209ENST00000520602 ZNF500O60304 480 aaPredicted RBP11.62□□□□□ -0.55
MCF2-209ENST00000520602 SSBP05455 408 aaKnown RBP eCLIP11.62□□□□□ -0.55
MCF2-209ENST00000520602 UBA7P41226 1012 aa11.62□□□□□ -0.55
MCF2-209ENST00000520602 MNS1Q8NEH6 495 aa11.62□□□□□ -0.55
MCF2-209ENST00000520602 FAM84BQ96KN1 310 aaPredicted RBP11.62□□□□□ -0.55
MCF2-209ENST00000520602 PLIN2Q99541 437 aa11.62□□□□□ -0.55
MCF2-209ENST00000520602 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.62□□□□□ -0.55
MCF2-209ENST00000520602 RBM28Q9NW13 759 aaKnown RBP11.62□□□□□ -0.55
MCF2-209ENST00000520602 KIF28PB7ZC32 967 aa11.61□□□□□ -0.55
MCF2-209ENST00000520602 EIF6P56537 245 aaKnown RBP11.61□□□□□ -0.55
MCF2-209ENST00000520602 GSDMDP57764 484 aa11.61□□□□□ -0.55
MCF2-209ENST00000520602 DPCR1Q3MIW9 517 aa11.61□□□□□ -0.55
MCF2-209ENST00000520602 EPB41L4AQ9HCS5 686 aaPredicted RBP11.61□□□□□ -0.55
MCF2-209ENST00000520602 WTIPA6NIX2 430 aaPredicted RBP11.61□□□□□ -0.55
MCF2-209ENST00000520602 IFNAR1P17181 557 aa11.61□□□□□ -0.55
MCF2-209ENST00000520602 PYCARDQ9ULZ3 195 aa11.61□□□□□ -0.55
MCF2-209ENST00000520602 USP17L8P0C7I0 530 aa11.61□□□□□ -0.55
MCF2-209ENST00000520602 KANK3Q6NY19 840 aa11.61□□□□□ -0.55
MCF2-209ENST00000520602 TMX1Q9H3N1 280 aa11.61□□□□□ -0.55
MCF2-209ENST00000520602 A0A1W2PQ27 194 aa11.6□□□□□ -0.55
MCF2-209ENST00000520602 A0A1W2PQ64 194 aa11.6□□□□□ -0.55
MCF2-209ENST00000520602 A0A1W2PQD8 194 aa11.6□□□□□ -0.55
MCF2-209ENST00000520602 NEMFO60524 1076 aa11.6□□□□□ -0.55
MCF2-209ENST00000520602 FMNL1O95466 1100 aaPredicted RBP11.6□□□□□ -0.55
MCF2-209ENST00000520602 CYP2D6P10635 497 aa11.6□□□□□ -0.55
MCF2-209ENST00000520602 RBM17Q96I25 401 aaKnown RBP11.6□□□□□ -0.55
MCF2-209ENST00000520602 UBE2Q2LH0YL09 131 aa11.6□□□□□ -0.55
MCF2-209ENST00000520602 TRIM37O94972 964 aa11.6□□□□□ -0.55
MCF2-209ENST00000520602 NAPAP54920 295 aa11.6□□□□□ -0.55
MCF2-209ENST00000520602 NLRP12P59046 1061 aa11.6□□□□□ -0.55
MCF2-209ENST00000520602 ZNF827Q17R98 1081 aa11.6□□□□□ -0.55
MCF2-209ENST00000520602 MFSD14BQ5SR56 506 aa11.6□□□□□ -0.55
MCF2-209ENST00000520602 SERTAD1Q9UHV2 236 aa11.6□□□□□ -0.55
MCF2-209ENST00000520602 HPS5Q9UPZ3 1129 aa11.6□□□□□ -0.55
MCF2-209ENST00000520602 ABCC12Q96J65 1359 aa11.6□□□□□ -0.55
MCF2-209ENST00000520602 GNAQP50148 359 aa11.6□□□□□ -0.55
MCF2-209ENST00000520602 MYL5Q02045 173 aa11.6□□□□□ -0.55
MCF2-209ENST00000520602 TSC1Q92574 1164 aa11.6□□□□□ -0.55
MCF2-209ENST00000520602 MAGEC2Q9UBF1 373 aaPredicted RBP11.6□□□□□ -0.55
MCF2-209ENST00000520602 PPP1R1BQ9UD71 204 aaPredicted RBP11.6□□□□□ -0.55
MCF2-209ENST00000520602 NMT2O60551 498 aa11.59□□□□□ -0.55
MCF2-209ENST00000520602 GUCY1A2P33402 732 aa11.59□□□□□ -0.55
MCF2-209ENST00000520602 GTF2IP78347 998 aa11.59□□□□□ -0.55
MCF2-209ENST00000520602 ALX1Q15699 326 aa11.59□□□□□ -0.55
MCF2-209ENST00000520602 IGDCC4Q8TDY8 1250 aa11.59□□□□□ -0.55
MCF2-209ENST00000520602 DYNLL2Q96FJ2 89 aa11.59□□□□□ -0.55
MCF2-209ENST00000520602 ZNF512BQ96KM6 892 aaPredicted RBP11.59□□□□□ -0.55
MCF2-209ENST00000520602 ZHX3Q9H4I2 956 aa11.59□□□□□ -0.55
MCF2-209ENST00000520602 GOLGA8HP0CJ92 632 aa11.59□□□□□ -0.55
MCF2-209ENST00000520602 STIM1Q13586 685 aa11.59□□□□□ -0.55
MCF2-209ENST00000520602 C3orf67Q6ZVT6 689 aa11.59□□□□□ -0.55
MCF2-209ENST00000520602 TRMT44Q8IYL2 757 aaKnown RBP11.59□□□□□ -0.55
MCF2-209ENST00000520602 TDRD7Q8NHU6 1098 aaKnown RBP11.59□□□□□ -0.55
MCF2-209ENST00000520602 STAG1Q8WVM7 1258 aa11.59□□□□□ -0.55
MCF2-209ENST00000520602 XPO4Q9C0E2 1151 aaKnown RBP11.59□□□□□ -0.55
MCF2-209ENST00000520602 RGPD5Q99666 1765 aa11.59□□□□□ -0.55
MCF2-209ENST00000520602 IPO7O95373 1038 aaKnown RBP11.59□□□□□ -0.55
MCF2-209ENST00000520602 CALML3P27482 149 aa11.59□□□□□ -0.55
MCF2-209ENST00000520602 TTC38Q5R3I4 469 aa11.59□□□□□ -0.55
MCF2-209ENST00000520602 RRAGBQ5VZM2 374 aa11.59□□□□□ -0.55
MCF2-209ENST00000520602 SEPT12Q8IYM1 358 aa11.59□□□□□ -0.55
MCF2-209ENST00000520602 LRRC37A3O60309 1634 aa11.58□□□□□ -0.56
MCF2-209ENST00000520602 PLEKHA8P1O95397 391 aa11.58□□□□□ -0.56
MCF2-209ENST00000520602 BMP15O95972 392 aa11.58□□□□□ -0.56
MCF2-209ENST00000520602 FGFR2P21802 821 aa11.58□□□□□ -0.56
MCF2-209ENST00000520602 KLRK1P26718 216 aa11.58□□□□□ -0.56
MCF2-209ENST00000520602 FANCCQ00597 558 aa11.58□□□□□ -0.56
MCF2-209ENST00000520602 CEP135Q66GS9 1140 aa11.58□□□□□ -0.56
MCF2-209ENST00000520602 PTF1AQ7RTS3 328 aa11.58□□□□□ -0.56
MCF2-209ENST00000520602 KIF18AQ8NI77 898 aa11.58□□□□□ -0.56
MCF2-209ENST00000520602 GPKOWQ92917 476 aaPredicted RBP eCLIP11.58□□□□□ -0.56
MCF2-209ENST00000520602 ARPP21Q9UBL0 812 aaPredicted RBP11.58□□□□□ -0.56
MCF2-209ENST00000520602 PCDHA5Q9Y5H7 936 aa11.58□□□□□ -0.56
MCF2-209ENST00000520602 LMO7Q8WWI1 1683 aa11.58□□□□□ -0.56
MCF2-209ENST00000520602 MMP1P03956 469 aa11.58□□□□□ -0.56
MCF2-209ENST00000520602 SERPINB2P05120 415 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms