RNA–Protein interactions for RNA: ENST00000520579.5

PDGFRB-207, Transcript of platelet derived growth factor receptor beta, humanhuman

TSL 1 (best)

Gene PDGFRB, Length 3,860 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRB-207ENST00000520579 VWDEQ8N2E2 1590 aa11.42□□□□□ -0.58
PDGFRB-207ENST00000520579 MAP2P11137 1827 aaKnown RBP11.42□□□□□ -0.58
PDGFRB-207ENST00000520579 PRC1O43663 620 aa11.41□□□□□ -0.58
PDGFRB-207ENST00000520579 KIAA0754O94854 1291 aa11.41□□□□□ -0.58
PDGFRB-207ENST00000520579 RPSAP08865 295 aaKnown RBP11.41□□□□□ -0.58
PDGFRB-207ENST00000520579 SETSIPP0DME0 302 aa11.41□□□□□ -0.58
PDGFRB-207ENST00000520579 SLC7A5Q01650 507 aa11.41□□□□□ -0.58
PDGFRB-207ENST00000520579 MTA1Q13330 715 aa11.41□□□□□ -0.58
PDGFRB-207ENST00000520579 ANKRD18AQ8IVF6 992 aa11.41□□□□□ -0.58
PDGFRB-207ENST00000520579 FOXP4Q8IVH2 680 aaPredicted RBP11.41□□□□□ -0.58
PDGFRB-207ENST00000520579 SH2D3CQ8N5H7 860 aa11.41□□□□□ -0.58
PDGFRB-207ENST00000520579 TBC1D22AQ8WUA7 517 aa11.41□□□□□ -0.58
PDGFRB-207ENST00000520579 EPB41L3Q9Y2J2 1087 aaPredicted RBP11.41□□□□□ -0.58
PDGFRB-207ENST00000520579 MACROD2A1Z1Q3 448 aa11.41□□□□□ -0.58
PDGFRB-207ENST00000520579 GOLGA6CA6NDK9 693 aa11.41□□□□□ -0.58
PDGFRB-207ENST00000520579 GOLGA6DP0CG33 693 aa11.41□□□□□ -0.58
PDGFRB-207ENST00000520579 CEP112Q8N8E3 955 aa11.41□□□□□ -0.58
PDGFRB-207ENST00000520579 KLHL23Q8NBE8 558 aa11.41□□□□□ -0.58
PDGFRB-207ENST00000520579 CCDC148Q8NFR7 591 aa11.41□□□□□ -0.58
PDGFRB-207ENST00000520579 RUFY1Q96T51 708 aa11.41□□□□□ -0.58
PDGFRB-207ENST00000520579 JADE2Q9NQC1 790 aa11.41□□□□□ -0.58
PDGFRB-207ENST00000520579 GOLGA6AQ9NYA3 693 aa11.41□□□□□ -0.58
PDGFRB-207ENST00000520579 REREQ9P2R6 1566 aa11.41□□□□□ -0.58
PDGFRB-207ENST00000520579 ANAPC4Q9UJX5 808 aa11.41□□□□□ -0.58
PDGFRB-207ENST00000520579 KCNH3Q9ULD8 1083 aa11.41□□□□□ -0.58
PDGFRB-207ENST00000520579 DEPDC5O75140 1603 aa11.41□□□□□ -0.58
PDGFRB-207ENST00000520579 EXOC5O00471 708 aa11.41□□□□□ -0.58
PDGFRB-207ENST00000520579 HNRNPH1P31943 449 aaKnown RBP11.41□□□□□ -0.58
PDGFRB-207ENST00000520579 CLNS1AP54105 237 aaKnown RBP11.41□□□□□ -0.58
PDGFRB-207ENST00000520579 STIM1Q13586 685 aa11.41□□□□□ -0.58
PDGFRB-207ENST00000520579 KIFC2Q96AC6 838 aa11.41□□□□□ -0.58
PDGFRB-207ENST00000520579 ZNF594Q96JF6 807 aaPredicted RBP11.41□□□□□ -0.58
PDGFRB-207ENST00000520579 TSPOAP1O95153 1857 aa11.41□□□□□ -0.58
PDGFRB-207ENST00000520579 RIMBP3CA6NJZ7 1639 aa11.41□□□□□ -0.58
PDGFRB-207ENST00000520579 RIMBP3BA6NNM3 1639 aa11.41□□□□□ -0.58
PDGFRB-207ENST00000520579 RIMBP3Q9UFD9 1639 aa11.41□□□□□ -0.58
PDGFRB-207ENST00000520579 CPSF1Q10570 1443 aaKnown RBP11.41□□□□□ -0.58
PDGFRB-207ENST00000520579 NDUFAB1O14561 156 aa11.4□□□□□ -0.58
PDGFRB-207ENST00000520579 ZNF185O15231 689 aa11.4□□□□□ -0.58
PDGFRB-207ENST00000520579 PPARAQ07869 468 aa11.4□□□□□ -0.58
PDGFRB-207ENST00000520579 TRIM29Q14134 588 aa11.4□□□□□ -0.58
PDGFRB-207ENST00000520579 USP49Q70CQ1 688 aa11.4□□□□□ -0.58
PDGFRB-207ENST00000520579 SUGP1Q8IWZ8 645 aaKnown RBP11.4□□□□□ -0.58
PDGFRB-207ENST00000520579 FAM76AQ8TAV0 307 aa11.4□□□□□ -0.58
PDGFRB-207ENST00000520579 SH3GL3Q99963 347 aa11.4□□□□□ -0.58
PDGFRB-207ENST00000520579 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.4□□□□□ -0.58
PDGFRB-207ENST00000520579 TAB2Q9NYJ8 693 aa11.4□□□□□ -0.58
PDGFRB-207ENST00000520579 L1RE1Q9UN81 338 aa11.4□□□□□ -0.58
PDGFRB-207ENST00000520579 YEATS2Q9ULM3 1422 aa11.4□□□□□ -0.58
PDGFRB-207ENST00000520579 SHTN1A0MZ66 631 aa11.4□□□□□ -0.58
PDGFRB-207ENST00000520579 SHC4Q6S5L8 630 aa11.4□□□□□ -0.58
PDGFRB-207ENST00000520579 RTEL1Q9NZ71 1219 aa11.4□□□□□ -0.58
PDGFRB-207ENST00000520579 COL15A1P39059 1388 aa11.4□□□□□ -0.58
PDGFRB-207ENST00000520579 MAP3K5Q99683 1374 aa11.4□□□□□ -0.58
PDGFRB-207ENST00000520579 N4BP3O15049 544 aa11.4□□□□□ -0.58
PDGFRB-207ENST00000520579 PPFIA4O75335 1185 aa11.4□□□□□ -0.58
PDGFRB-207ENST00000520579 ELF1P32519 619 aa11.4□□□□□ -0.58
PDGFRB-207ENST00000520579 ZRSR2Q15696 482 aaKnown RBP11.4□□□□□ -0.58
PDGFRB-207ENST00000520579 PTPROQ16827 1216 aa11.4□□□□□ -0.58
PDGFRB-207ENST00000520579 VPS37DQ86XT2 251 aa11.4□□□□□ -0.58
PDGFRB-207ENST00000520579 ZBTB10Q96DT7 871 aa11.4□□□□□ -0.58
PDGFRB-207ENST00000520579 NAPGQ99747 312 aaPredicted RBP11.4□□□□□ -0.58
PDGFRB-207ENST00000520579 ZKSCAN3Q9BRR0 538 aa11.4□□□□□ -0.58
PDGFRB-207ENST00000520579 SLC26A6Q9BXS9 759 aa11.4□□□□□ -0.58
PDGFRB-207ENST00000520579 HSD3B7Q9H2F3 369 aa11.4□□□□□ -0.58
PDGFRB-207ENST00000520579 GNL3LQ9NVN8 582 aaKnown RBP11.4□□□□□ -0.58
PDGFRB-207ENST00000520579 WDR3Q9UNX4 943 aaKnown RBP eCLIP11.4□□□□□ -0.58
PDGFRB-207ENST00000520579 C2orf54Q08AI8 447 aa11.39□□□□□ -0.59
PDGFRB-207ENST00000520579 SLC9C2Q5TAH2 1124 aa11.39□□□□□ -0.59
PDGFRB-207ENST00000520579 CPLX2Q6PUV4 134 aaKnown RBP11.39□□□□□ -0.59
PDGFRB-207ENST00000520579 METTL16Q86W50 562 aaKnown RBP11.39□□□□□ -0.59
PDGFRB-207ENST00000520579 ABTB2Q8N961 1025 aa11.39□□□□□ -0.59
PDGFRB-207ENST00000520579 ZFYVE16Q7Z3T8 1539 aa11.39□□□□□ -0.59
PDGFRB-207ENST00000520579 MYBL2P10244 700 aa11.39□□□□□ -0.59
PDGFRB-207ENST00000520579 CXCR5P32302 372 aa11.39□□□□□ -0.59
PDGFRB-207ENST00000520579 NEXNQ0ZGT2 675 aa11.39□□□□□ -0.59
PDGFRB-207ENST00000520579 NEDD9Q14511 834 aa11.39□□□□□ -0.59
PDGFRB-207ENST00000520579 ENOX2Q16206 610 aaKnown RBP11.39□□□□□ -0.59
PDGFRB-207ENST00000520579 NUP133Q8WUM0 1156 aa11.39□□□□□ -0.59
PDGFRB-207ENST00000520579 BLZF1Q9H2G9 400 aa11.39□□□□□ -0.59
PDGFRB-207ENST00000520579 ATP8B1O43520 1251 aa11.39□□□□□ -0.59
PDGFRB-207ENST00000520579 KIAA1328Q86T90 577 aa11.39□□□□□ -0.59
PDGFRB-207ENST00000520579 FAM71BQ8TC56 605 aa11.39□□□□□ -0.59
PDGFRB-207ENST00000520579 TEX13AQ9BXU3 409 aaPredicted RBP11.39□□□□□ -0.59
PDGFRB-207ENST00000520579 HPDP32754 393 aaPredicted RBP11.38□□□□□ -0.59
PDGFRB-207ENST00000520579 PI16Q6UXB8 463 aa11.38□□□□□ -0.59
PDGFRB-207ENST00000520579 ARMC2Q8NEN0 867 aa11.38□□□□□ -0.59
PDGFRB-207ENST00000520579 AIDAQ96BJ3 306 aa11.38□□□□□ -0.59
PDGFRB-207ENST00000520579 MKRN1Q9UHC7 482 aaKnown RBP11.38□□□□□ -0.59
PDGFRB-207ENST00000520579 ADGRG1Q9Y653 693 aa11.38□□□□□ -0.59
PDGFRB-207ENST00000520579 CPS1P31327 1500 aa11.38□□□□□ -0.59
PDGFRB-207ENST00000520579 TET3O43151 1660 aa11.38□□□□□ -0.59
PDGFRB-207ENST00000520579 A0A087WUV0 522 aaPredicted RBP11.38□□□□□ -0.59
PDGFRB-207ENST00000520579 BMP6P22004 513 aa11.38□□□□□ -0.59
PDGFRB-207ENST00000520579 RASSF8Q8NHQ8 419 aa11.38□□□□□ -0.59
PDGFRB-207ENST00000520579 SMARCC2Q8TAQ2 1214 aa11.38□□□□□ -0.59
PDGFRB-207ENST00000520579 SETD1BQ9UPS6 1966 aaKnown RBP11.38□□□□□ -0.59
PDGFRB-207ENST00000520579 ENO4A6NNW6 628 aa11.38□□□□□ -0.59
PDGFRB-207ENST00000520579 EFCAB13Q8IY85 973 aa11.38□□□□□ -0.59
PDGFRB-207ENST00000520579 TEX11Q8IYF3 940 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms