RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 SELENOOQ9BVL4 669 aa14.26□□□□□ -0.13
USP53-209ENST00000514665 TTC37Q6PGP7 1564 aa14.26□□□□□ -0.13
USP53-209ENST00000514665 USP17L12C9JPN9 530 aa14.26□□□□□ -0.13
USP53-209ENST00000514665 USP17L21D6R901 530 aa14.26□□□□□ -0.13
USP53-209ENST00000514665 KRT13P13646 458 aa14.26□□□□□ -0.13
USP53-209ENST00000514665 EZRP15311 586 aaKnown RBP14.26□□□□□ -0.13
USP53-209ENST00000514665 DESP17661 470 aa14.26□□□□□ -0.13
USP53-209ENST00000514665 RAPGEF1Q13905 1077 aa14.26□□□□□ -0.13
USP53-209ENST00000514665 FBXO18Q8NFZ0 1043 aa14.26□□□□□ -0.13
USP53-209ENST00000514665 DESI2Q9BSY9 194 aa14.26□□□□□ -0.13
USP53-209ENST00000514665 PRDM15P57071 1507 aaPredicted RBP14.26□□□□□ -0.13
USP53-209ENST00000514665 PLCD1P51178 756 aa14.26□□□□□ -0.13
USP53-209ENST00000514665 PAK1Q13153 545 aa14.26□□□□□ -0.13
USP53-209ENST00000514665 ERCC6LQ2NKX8 1250 aa14.26□□□□□ -0.13
USP53-209ENST00000514665 DCAF17Q5H9S7 520 aaPredicted RBP14.26□□□□□ -0.13
USP53-209ENST00000514665 HS2ST1Q7LGA3 356 aa14.26□□□□□ -0.13
USP53-209ENST00000514665 SDR42E1Q8WUS8 393 aa14.26□□□□□ -0.13
USP53-209ENST00000514665 TLDC2A0PJX2 215 aa14.25□□□□□ -0.13
USP53-209ENST00000514665 VAV2P52735 878 aa14.25□□□□□ -0.13
USP53-209ENST00000514665 NAPGQ99747 312 aaPredicted RBP14.25□□□□□ -0.13
USP53-209ENST00000514665 MRVI1Q9Y6F6 885 aa14.25□□□□□ -0.13
USP53-209ENST00000514665 ROBO2Q9HCK4 1378 aa14.25□□□□□ -0.13
USP53-209ENST00000514665 CLIC4Q9Y696 253 aa14.25□□□□□ -0.13
USP53-209ENST00000514665 CCDC172P0C7W6 258 aa14.25□□□□□ -0.13
USP53-209ENST00000514665 FANCLQ9NW38 375 aa14.25□□□□□ -0.13
USP53-209ENST00000514665 TMEM110-MUSTN1A8MSY1 372 aa14.24□□□□□ -0.13
USP53-209ENST00000514665 CCNT1O60563 726 aaKnown RBP14.24□□□□□ -0.13
USP53-209ENST00000514665 MNAT1P51948 309 aa14.24□□□□□ -0.13
USP53-209ENST00000514665 TFAP4Q01664 338 aa14.24□□□□□ -0.13
USP53-209ENST00000514665 SPECC1LQ69YQ0 1117 aa14.24□□□□□ -0.13
USP53-209ENST00000514665 DYMQ7RTS9 669 aa14.24□□□□□ -0.13
USP53-209ENST00000514665 NOSTRINQ8IVI9 506 aa14.24□□□□□ -0.13
USP53-209ENST00000514665 IFNL3Q8IZI9 196 aa14.24□□□□□ -0.13
USP53-209ENST00000514665 GIMAP7Q8NHV1 300 aa14.24□□□□□ -0.13
USP53-209ENST00000514665 EEF2KMTQ96G04 330 aa14.24□□□□□ -0.13
USP53-209ENST00000514665 OPA1O60313 960 aa14.24□□□□□ -0.13
USP53-209ENST00000514665 UFL1O94874 794 aa14.24□□□□□ -0.13
USP53-209ENST00000514665 FAM13AO94988 1023 aa14.24□□□□□ -0.13
USP53-209ENST00000514665 BCAMP50895 628 aa14.24□□□□□ -0.13
USP53-209ENST00000514665 RAD51AP2Q09MP3 1159 aa14.24□□□□□ -0.13
USP53-209ENST00000514665 PI16Q6UXB8 463 aa14.24□□□□□ -0.13
USP53-209ENST00000514665 HDXQ7Z353 690 aa14.24□□□□□ -0.13
USP53-209ENST00000514665 SMIM23A6NLE4 172 aa14.23□□□□□ -0.13
USP53-209ENST00000514665 PHKA1P46020 1223 aa14.23□□□□□ -0.13
USP53-209ENST00000514665 GYG1P46976 350 aa14.23□□□□□ -0.13
USP53-209ENST00000514665 PPARDQ03181 441 aa14.23□□□□□ -0.13
USP53-209ENST00000514665 FCHSD1Q86WN1 690 aa14.23□□□□□ -0.13
USP53-209ENST00000514665 CCDC87Q9NVE4 849 aa14.23□□□□□ -0.13
USP53-209ENST00000514665 ZBTB21Q9ULJ3 1066 aa14.23□□□□□ -0.13
USP53-209ENST00000514665 MYO5CQ9NQX4 1742 aa14.23□□□□□ -0.13
USP53-209ENST00000514665 SASH1O94885 1247 aa14.23□□□□□ -0.13
USP53-209ENST00000514665 IVLP07476 585 aa14.23□□□□□ -0.13
USP53-209ENST00000514665 GJC1P36383 396 aa14.23□□□□□ -0.13
USP53-209ENST00000514665 MRPL12P52815 198 aaKnown RBP14.23□□□□□ -0.13
USP53-209ENST00000514665 CTSWP56202 376 aa14.23□□□□□ -0.13
USP53-209ENST00000514665 MAPKAPK5Q8IW41 473 aa14.23□□□□□ -0.13
USP53-209ENST00000514665 OGFOD1Q8N543 542 aa14.23□□□□□ -0.13
USP53-209ENST00000514665 VEZTQ9HBM0 779 aa14.23□□□□□ -0.13
USP53-209ENST00000514665 ADCY9O60503 1353 aa14.23□□□□□ -0.13
USP53-209ENST00000514665 UBAP1LF5GYI3 381 aa14.23□□□□□ -0.13
USP53-209ENST00000514665 PTPN21Q16825 1174 aa14.23□□□□□ -0.13
USP53-209ENST00000514665 ARHGEF25Q86VW2 580 aa14.23□□□□□ -0.13
USP53-209ENST00000514665 TTF2Q9UNY4 1162 aaKnown RBP14.23□□□□□ -0.13
USP53-209ENST00000514665 CMA1P23946 247 aa14.23□□□□□ -0.13
USP53-209ENST00000514665 ARID4AP29374 1257 aaPredicted RBP14.23□□□□□ -0.13
USP53-209ENST00000514665 CYP26C1Q6V0L0 522 aa14.23□□□□□ -0.13
USP53-209ENST00000514665 LRRC8AQ8IWT6 810 aa14.23□□□□□ -0.13
USP53-209ENST00000514665 SMAP1Q8IYB5 467 aaPredicted RBP14.23□□□□□ -0.13
USP53-209ENST00000514665 GREM2Q9H772 168 aa14.23□□□□□ -0.13
USP53-209ENST00000514665 HMGB2P26583 209 aaKnown RBP14.22□□□□□ -0.13
USP53-209ENST00000514665 PPARAQ07869 468 aa14.22□□□□□ -0.13
USP53-209ENST00000514665 C10orf67Q8IYJ2 551 aa14.22□□□□□ -0.13
USP53-209ENST00000514665 CNBD1Q8NA66 436 aa14.22□□□□□ -0.13
USP53-209ENST00000514665 FANCBQ8NB91 859 aa14.22□□□□□ -0.13
USP53-209ENST00000514665 GDAP1L1Q96MZ0 367 aa14.22□□□□□ -0.13
USP53-209ENST00000514665 PKD2L1Q9P0L9 805 aa14.22□□□□□ -0.13
USP53-209ENST00000514665 PCDHA5Q9Y5H7 936 aa14.22□□□□□ -0.13
USP53-209ENST00000514665 MROH5Q6ZUA9 1318 aa14.22□□□□□ -0.13
USP53-209ENST00000514665 TMTC1Q8IUR5 882 aa14.22□□□□□ -0.13
USP53-209ENST00000514665 NSUN7Q8NE18 718 aaKnown RBP14.22□□□□□ -0.13
USP53-209ENST00000514665 PI4K2BQ8TCG2 481 aa14.22□□□□□ -0.13
USP53-209ENST00000514665 RABEP2Q9H5N1 569 aa14.22□□□□□ -0.13
USP53-209ENST00000514665 LRWD1Q9UFC0 647 aa14.22□□□□□ -0.13
USP53-209ENST00000514665 ERVV-2B6SEH9 535 aa14.22□□□□□ -0.13
USP53-209ENST00000514665 EBAG9O00559 213 aa14.22□□□□□ -0.13
USP53-209ENST00000514665 TUBB4BP68371 445 aa14.22□□□□□ -0.13
USP53-209ENST00000514665 CFAP58Q5T655 872 aa14.22□□□□□ -0.13
USP53-209ENST00000514665 CCDC65Q8IXS2 484 aa14.22□□□□□ -0.13
USP53-209ENST00000514665 CCDC155Q8N6L0 562 aa14.22□□□□□ -0.13
USP53-209ENST00000514665 TCHPQ9BT92 498 aa14.22□□□□□ -0.13
USP53-209ENST00000514665 TUBBP07437 444 aa14.21□□□□□ -0.13
USP53-209ENST00000514665 CACTINQ8WUQ7 758 aaKnown RBP14.21□□□□□ -0.13
USP53-209ENST00000514665 NELFBQ8WX92 580 aa14.21□□□□□ -0.13
USP53-209ENST00000514665 FERMT2Q96AC1 680 aa14.21□□□□□ -0.13
USP53-209ENST00000514665 MRFAP1L1Q96HT8 127 aa14.21□□□□□ -0.13
USP53-209ENST00000514665 TBC1D7Q9P0N9 293 aa14.21□□□□□ -0.13
USP53-209ENST00000514665 TNKSO95271 1327 aa14.21□□□□□ -0.13
USP53-209ENST00000514665 ETF1P62495 437 aaKnown RBP14.21□□□□□ -0.13
USP53-209ENST00000514665 ZMYM1Q5SVZ6 1142 aa14.21□□□□□ -0.13
USP53-209ENST00000514665 MAST3O60307 1309 aa14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms