RNA–Protein interactions for RNA: ENST00000513818.1

TOPBP1-209, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 1 (best)

Gene TOPBP1, Length 898 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-209ENST00000513818 GBA2Q9HCG7 927 aaPredicted RBP11.76□□□□□ -0.53
TOPBP1-209ENST00000513818 HELLSQ9NRZ9 838 aa11.76□□□□□ -0.53
TOPBP1-209ENST00000513818 MCM9Q9NXL9 1143 aa11.76□□□□□ -0.53
TOPBP1-209ENST00000513818 ABT1Q9ULW3 272 aaKnown RBP11.76□□□□□ -0.53
TOPBP1-209ENST00000513818 ANGEL1Q9UNK9 670 aaKnown RBP11.76□□□□□ -0.53
TOPBP1-209ENST00000513818 CCDC171Q6TFL3 1326 aa11.76□□□□□ -0.53
TOPBP1-209ENST00000513818 CEP350Q5VT06 3117 aa11.75□□□□□ -0.53
TOPBP1-209ENST00000513818 TMEM88BA6NKF7 163 aa11.75□□□□□ -0.53
TOPBP1-209ENST00000513818 GSG1L2A8MUP6 293 aa11.75□□□□□ -0.53
TOPBP1-209ENST00000513818 APPP05067 770 aa11.75□□□□□ -0.53
TOPBP1-209ENST00000513818 NF2P35240 595 aa11.75□□□□□ -0.53
TOPBP1-209ENST00000513818 MCMDC2Q4G0Z9 681 aa11.75□□□□□ -0.53
TOPBP1-209ENST00000513818 CERS3Q8IU89 383 aa11.75□□□□□ -0.53
TOPBP1-209ENST00000513818 SPOCK2Q92563 424 aa11.75□□□□□ -0.53
TOPBP1-209ENST00000513818 DNAJC18Q9H819 358 aa11.75□□□□□ -0.53
TOPBP1-209ENST00000513818 MKRN1Q9UHC7 482 aaKnown RBP11.75□□□□□ -0.53
TOPBP1-209ENST00000513818 ATAD5Q96QE3 1844 aa11.74□□□□□ -0.53
TOPBP1-209ENST00000513818 HIP1O00291 1037 aa11.74□□□□□ -0.53
TOPBP1-209ENST00000513818 POLR3DP05423 398 aaPredicted RBP11.74□□□□□ -0.53
TOPBP1-209ENST00000513818 TDO2P48775 406 aa11.74□□□□□ -0.53
TOPBP1-209ENST00000513818 PLCD1P51178 756 aa11.74□□□□□ -0.53
TOPBP1-209ENST00000513818 HUNKP57058 714 aa11.74□□□□□ -0.53
TOPBP1-209ENST00000513818 GRM1Q13255 1194 aa11.74□□□□□ -0.53
TOPBP1-209ENST00000513818 SHROOM1Q2M3G4 852 aaPredicted RBP11.74□□□□□ -0.53
TOPBP1-209ENST00000513818 SUPT20HL1Q3ZLR7 823 aa11.74□□□□□ -0.53
TOPBP1-209ENST00000513818 SLC44A5Q8NCS7 719 aa11.74□□□□□ -0.53
TOPBP1-209ENST00000513818 DYNLL2Q96FJ2 89 aa11.74□□□□□ -0.53
TOPBP1-209ENST00000513818 CLMNQ96JQ2 1002 aa11.74□□□□□ -0.53
TOPBP1-209ENST00000513818 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.74□□□□□ -0.53
TOPBP1-209ENST00000513818 LAMA4Q16363 1823 aa11.74□□□□□ -0.53
TOPBP1-209ENST00000513818 USP17L12C9JPN9 530 aa11.73□□□□□ -0.53
TOPBP1-209ENST00000513818 USP17L21D6R901 530 aa11.73□□□□□ -0.53
TOPBP1-209ENST00000513818 CDC45O75419 566 aa11.73□□□□□ -0.53
TOPBP1-209ENST00000513818 USP2O75604 605 aaPredicted RBP11.73□□□□□ -0.53
TOPBP1-209ENST00000513818 MYH8P13535 1937 aa11.73□□□□□ -0.53
TOPBP1-209ENST00000513818 HSPA6P17066 643 aa11.73□□□□□ -0.53
TOPBP1-209ENST00000513818 INPP5BP32019 993 aa11.73□□□□□ -0.53
TOPBP1-209ENST00000513818 DOCK1Q14185 1865 aa11.73□□□□□ -0.53
TOPBP1-209ENST00000513818 RRP1BQ14684 758 aaKnown RBP11.73□□□□□ -0.53
TOPBP1-209ENST00000513818 CTR9Q6PD62 1173 aa11.73□□□□□ -0.53
TOPBP1-209ENST00000513818 IFNL3Q8IZI9 196 aa11.73□□□□□ -0.53
TOPBP1-209ENST00000513818 CRACR2BQ8N4Y2 399 aaPredicted RBP11.73□□□□□ -0.53
TOPBP1-209ENST00000513818 C2orf69Q8N8R5 385 aa11.73□□□□□ -0.53
TOPBP1-209ENST00000513818 WRNIP1Q96S55 665 aa11.73□□□□□ -0.53
TOPBP1-209ENST00000513818 NAPBQ9H115 298 aa11.73□□□□□ -0.53
TOPBP1-209ENST00000513818 ATP8A2Q9NTI2 1148 aa11.73□□□□□ -0.53
TOPBP1-209ENST00000513818 RAD50Q92878 1312 aa11.72□□□□□ -0.53
TOPBP1-209ENST00000513818 MINDY4BA8MYZ0 360 aa11.72□□□□□ -0.53
TOPBP1-209ENST00000513818 PPP1R12BO60237 982 aaPredicted RBP11.72□□□□□ -0.53
TOPBP1-209ENST00000513818 HLA-DOAP06340 250 aa11.72□□□□□ -0.53
TOPBP1-209ENST00000513818 HSPD1P10809 573 aaKnown RBP11.72□□□□□ -0.53
TOPBP1-209ENST00000513818 GNAT2P19087 354 aa11.72□□□□□ -0.53
TOPBP1-209ENST00000513818 MKRN3Q13064 507 aaKnown RBP11.72□□□□□ -0.53
TOPBP1-209ENST00000513818 ARMC9Q7Z3E5 817 aa11.72□□□□□ -0.53
TOPBP1-209ENST00000513818 SAPCD2Q86UD0 394 aa11.72□□□□□ -0.53
TOPBP1-209ENST00000513818 CCDC84Q86UT8 332 aaPredicted RBP11.72□□□□□ -0.53
TOPBP1-209ENST00000513818 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.72□□□□□ -0.53
TOPBP1-209ENST00000513818 ZKSCAN4Q969J2 545 aaPredicted RBP11.72□□□□□ -0.53
TOPBP1-209ENST00000513818 DDRGK1Q96HY6 314 aa11.72□□□□□ -0.53
TOPBP1-209ENST00000513818 ESYT1Q9BSJ8 1104 aa11.72□□□□□ -0.53
TOPBP1-209ENST00000513818 ZNF341Q9BYN7 854 aa11.72□□□□□ -0.53
TOPBP1-209ENST00000513818 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.72□□□□□ -0.53
TOPBP1-209ENST00000513818 CREBZFQ9NS37 354 aa11.72□□□□□ -0.53
TOPBP1-209ENST00000513818 TLL2Q9Y6L7 1015 aa11.72□□□□□ -0.53
TOPBP1-209ENST00000513818 PATL2C9JE40 543 aaKnown RBP11.71□□□□□ -0.53
TOPBP1-209ENST00000513818 SGSM2O43147 1006 aa11.71□□□□□ -0.53
TOPBP1-209ENST00000513818 GDF11O95390 407 aa11.71□□□□□ -0.53
TOPBP1-209ENST00000513818 HAND2P61296 217 aa11.71□□□□□ -0.53
TOPBP1-209ENST00000513818 PTH1RQ03431 593 aa11.71□□□□□ -0.53
TOPBP1-209ENST00000513818 VGLL4Q14135 290 aa11.71□□□□□ -0.53
TOPBP1-209ENST00000513818 C12orf60Q5U649 245 aa11.71□□□□□ -0.53
TOPBP1-209ENST00000513818 DCAF15Q66K64 600 aa11.71□□□□□ -0.53
TOPBP1-209ENST00000513818 CYP4F22Q6NT55 531 aa11.71□□□□□ -0.53
TOPBP1-209ENST00000513818 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.71□□□□□ -0.53
TOPBP1-209ENST00000513818 KLRG1Q96E93 195 aa11.71□□□□□ -0.53
TOPBP1-209ENST00000513818 TRIM34Q9BYJ4 488 aa11.71□□□□□ -0.53
TOPBP1-209ENST00000513818 DHX36Q9H2U1 1008 aaKnown RBP11.71□□□□□ -0.53
TOPBP1-209ENST00000513818 ELP3Q9H9T3 547 aa11.71□□□□□ -0.53
TOPBP1-209ENST00000513818 PI4KBQ9UBF8 816 aa11.71□□□□□ -0.53
TOPBP1-209ENST00000513818 ARPP21Q9UBL0 812 aaPredicted RBP11.71□□□□□ -0.53
TOPBP1-209ENST00000513818 PHF20L1A8MW92 1017 aa11.7□□□□□ -0.54
TOPBP1-209ENST00000513818 SHMT1P34896 483 aa11.7□□□□□ -0.54
TOPBP1-209ENST00000513818 IREB2P48200 963 aaKnown RBP11.7□□□□□ -0.54
TOPBP1-209ENST00000513818 JAG1P78504 1218 aa11.7□□□□□ -0.54
TOPBP1-209ENST00000513818 CTDSPL2Q05D32 466 aa11.7□□□□□ -0.54
TOPBP1-209ENST00000513818 TTC6Q86TZ1 520 aa11.7□□□□□ -0.54
TOPBP1-209ENST00000513818 RUFY2Q8WXA3 655 aa11.7□□□□□ -0.54
TOPBP1-209ENST00000513818 NACAP1Q9BZK3 213 aa11.7□□□□□ -0.54
TOPBP1-209ENST00000513818 SERPINB13Q9UIV8 391 aa11.7□□□□□ -0.54
TOPBP1-209ENST00000513818 SNCAIPQ9Y6H5 919 aa11.7□□□□□ -0.54
TOPBP1-209ENST00000513818 ROBO3Q96MS0 1386 aa11.69□□□□□ -0.54
TOPBP1-209ENST00000513818 PRDM1O75626 825 aa11.69□□□□□ -0.54
TOPBP1-209ENST00000513818 FGAP02671 866 aa11.69□□□□□ -0.54
TOPBP1-209ENST00000513818 MFAP1P55081 439 aaKnown RBP11.69□□□□□ -0.54
TOPBP1-209ENST00000513818 FKBP1BP68106 108 aa11.69□□□□□ -0.54
TOPBP1-209ENST00000513818 GABPAQ06546 454 aa11.69□□□□□ -0.54
TOPBP1-209ENST00000513818 PPARAQ07869 468 aa11.69□□□□□ -0.54
TOPBP1-209ENST00000513818 MAP3K11Q16584 847 aa11.69□□□□□ -0.54
TOPBP1-209ENST00000513818 LDLRAD1Q5T700 205 aa11.69□□□□□ -0.54
TOPBP1-209ENST00000513818 GIMAP6Q6P9H5 292 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms