RNA–Protein interactions for RNA: ENST00000513538.1

TCOF1-212, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 701 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-212ENST00000513538 FOCADQ5VW36 1801 aa11.97□□□□□ -0.49
TCOF1-212ENST00000513538 MAST2Q6P0Q8 1798 aa11.97□□□□□ -0.49
TCOF1-212ENST00000513538 COL2A1P02458 1487 aaPredicted RBP11.96□□□□□ -0.49
TCOF1-212ENST00000513538 TBC1D12O60347 775 aa11.96□□□□□ -0.49
TCOF1-212ENST00000513538 TBC1D9Q6ZT07 1266 aa11.96□□□□□ -0.49
TCOF1-212ENST00000513538 HMG20BQ9P0W2 317 aa11.96□□□□□ -0.49
TCOF1-212ENST00000513538 TAOK2Q9UL54 1235 aa11.96□□□□□ -0.49
TCOF1-212ENST00000513538 TRIM32Q13049 653 aa11.95□□□□□ -0.5
TCOF1-212ENST00000513538 SPP2Q13103 211 aa11.95□□□□□ -0.5
TCOF1-212ENST00000513538 FAM110CQ1W6H9 321 aa11.95□□□□□ -0.5
TCOF1-212ENST00000513538 ERICH6Q7L0X2 663 aa11.95□□□□□ -0.5
TCOF1-212ENST00000513538 NSUN4Q96CB9 384 aaKnown RBP11.95□□□□□ -0.5
TCOF1-212ENST00000513538 PAWRQ96IZ0 340 aaKnown RBP11.95□□□□□ -0.5
TCOF1-212ENST00000513538 NR2E3Q9Y5X4 410 aa11.95□□□□□ -0.5
TCOF1-212ENST00000513538 PEX10O60683 326 aa11.94□□□□□ -0.5
TCOF1-212ENST00000513538 TFRCP02786 760 aaKnown RBP11.94□□□□□ -0.5
TCOF1-212ENST00000513538 MNX1P50219 401 aaPredicted RBP11.94□□□□□ -0.5
TCOF1-212ENST00000513538 HMGCS2P54868 508 aa11.94□□□□□ -0.5
TCOF1-212ENST00000513538 JAG1P78504 1218 aa11.94□□□□□ -0.5
TCOF1-212ENST00000513538 MTX1Q13505 466 aa11.94□□□□□ -0.5
TCOF1-212ENST00000513538 MVPQ14764 893 aaKnown RBP11.94□□□□□ -0.5
TCOF1-212ENST00000513538 SHROOM1Q2M3G4 852 aaPredicted RBP11.94□□□□□ -0.5
TCOF1-212ENST00000513538 SPTY2D1Q68D10 685 aaPredicted RBP11.94□□□□□ -0.5
TCOF1-212ENST00000513538 SLF2Q8IX21 1173 aa11.94□□□□□ -0.5
TCOF1-212ENST00000513538 PROCA1Q8NCQ7 364 aaPredicted RBP11.94□□□□□ -0.5
TCOF1-212ENST00000513538 LRCH3Q96II8 777 aa11.94□□□□□ -0.5
TCOF1-212ENST00000513538 API5Q9BZZ5 524 aaKnown RBP11.94□□□□□ -0.5
TCOF1-212ENST00000513538 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.94□□□□□ -0.5
TCOF1-212ENST00000513538 OSBPL5Q9H0X9 879 aaPredicted RBP11.94□□□□□ -0.5
TCOF1-212ENST00000513538 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.94□□□□□ -0.5
TCOF1-212ENST00000513538 GJD2Q9UKL4 321 aa11.94□□□□□ -0.5
TCOF1-212ENST00000513538 TNNQ9UQP3 1299 aa11.94□□□□□ -0.5
TCOF1-212ENST00000513538 SRGAP3O43295 1099 aa11.93□□□□□ -0.5
TCOF1-212ENST00000513538 EVI5O60447 810 aa11.93□□□□□ -0.5
TCOF1-212ENST00000513538 CAP2P40123 477 aa11.93□□□□□ -0.5
TCOF1-212ENST00000513538 MCAMP43121 646 aa11.93□□□□□ -0.5
TCOF1-212ENST00000513538 ZNF280CQ8ND82 737 aa11.93□□□□□ -0.5
TCOF1-212ENST00000513538 COA7Q96BR5 231 aa11.93□□□□□ -0.5
TCOF1-212ENST00000513538 ASCC2Q9H1I8 757 aaPredicted RBP11.93□□□□□ -0.5
TCOF1-212ENST00000513538 STAP2Q9UGK3 403 aa11.93□□□□□ -0.5
TCOF1-212ENST00000513538 LAMA3Q16787 3333 aa11.93□□□□□ -0.5
TCOF1-212ENST00000513538 ARID4AP29374 1257 aaPredicted RBP11.92□□□□□ -0.5
TCOF1-212ENST00000513538 RARSP54136 660 aaKnown RBP11.92□□□□□ -0.5
TCOF1-212ENST00000513538 SPATA5Q8NB90 893 aa11.92□□□□□ -0.5
TCOF1-212ENST00000513538 SH3RF3Q8TEJ3 882 aaPredicted RBP11.92□□□□□ -0.5
TCOF1-212ENST00000513538 NEUROD6Q96NK8 337 aa11.92□□□□□ -0.5
TCOF1-212ENST00000513538 DNAJC18Q9H819 358 aa11.92□□□□□ -0.5
TCOF1-212ENST00000513538 PNMA3Q9UL41 463 aa11.92□□□□□ -0.5
TCOF1-212ENST00000513538 AKAP2Q9Y2D5 859 aa11.92□□□□□ -0.5
TCOF1-212ENST00000513538 FRMPD3Q5JV73 1810 aa11.92□□□□□ -0.5
TCOF1-212ENST00000513538 PNMA6EA0A0J9YXQ4 647 aa11.91□□□□□ -0.5
TCOF1-212ENST00000513538 A0A1W2PPC1 479 aa11.91□□□□□ -0.5
TCOF1-212ENST00000513538 HMGCRP04035 888 aa11.91□□□□□ -0.5
TCOF1-212ENST00000513538 CT47B1P0C2W7 299 aaPredicted RBP11.91□□□□□ -0.5
TCOF1-212ENST00000513538 GCLCP48506 637 aaPredicted RBP11.91□□□□□ -0.5
TCOF1-212ENST00000513538 MTMR2Q13614 643 aa11.91□□□□□ -0.5
TCOF1-212ENST00000513538 SH3D19Q5HYK7 790 aa11.91□□□□□ -0.5
TCOF1-212ENST00000513538 POTEEQ6S8J3 1075 aa11.91□□□□□ -0.5
TCOF1-212ENST00000513538 ADGRA1Q86SQ6 560 aa11.91□□□□□ -0.5
TCOF1-212ENST00000513538 TEX11Q8IYF3 940 aa11.91□□□□□ -0.5
TCOF1-212ENST00000513538 TRIB2Q92519 343 aa11.91□□□□□ -0.5
TCOF1-212ENST00000513538 GDF15Q99988 308 aa11.91□□□□□ -0.5
TCOF1-212ENST00000513538 TXNRD2Q9NNW7 524 aa11.91□□□□□ -0.5
TCOF1-212ENST00000513538 RAI14Q9P0K7 980 aa11.91□□□□□ -0.5
TCOF1-212ENST00000513538 ZMYND8Q9ULU4 1186 aaPredicted RBP11.91□□□□□ -0.5
TCOF1-212ENST00000513538 USP17L5A8MUK1 530 aa11.9□□□□□ -0.5
TCOF1-212ENST00000513538 GNAI3P08754 354 aa11.9□□□□□ -0.5
TCOF1-212ENST00000513538 MAP3K21Q5TCX8 1036 aa11.9□□□□□ -0.5
TCOF1-212ENST00000513538 NECAB2Q7Z6G3 386 aa11.9□□□□□ -0.5
TCOF1-212ENST00000513538 C7orf61Q8IZ16 206 aa11.9□□□□□ -0.5
TCOF1-212ENST00000513538 MORF4L1Q9UBU8 362 aa11.9□□□□□ -0.5
TCOF1-212ENST00000513538 HDAC5Q9UQL6 1122 aa11.9□□□□□ -0.5
TCOF1-212ENST00000513538 RPTORQ8N122 1335 aa11.89□□□□□ -0.51
TCOF1-212ENST00000513538 MAP4K4O95819 1239 aaPredicted RBP11.89□□□□□ -0.51
TCOF1-212ENST00000513538 LDHCP07864 332 aa11.89□□□□□ -0.51
TCOF1-212ENST00000513538 TRIM27P14373 513 aa11.89□□□□□ -0.51
TCOF1-212ENST00000513538 CAPN2P17655 700 aa11.89□□□□□ -0.51
TCOF1-212ENST00000513538 CYP2B6P20813 491 aa11.89□□□□□ -0.51
TCOF1-212ENST00000513538 GSTO1P78417 241 aa11.89□□□□□ -0.51
TCOF1-212ENST00000513538 ANKLE1Q8NAG6 615 aa11.89□□□□□ -0.51
TCOF1-212ENST00000513538 P2RX7Q99572 595 aaKnown RBP11.89□□□□□ -0.51
TCOF1-212ENST00000513538 WDR18Q9BV38 432 aa11.89□□□□□ -0.51
TCOF1-212ENST00000513538 TBC1D2Q9BYX2 928 aa11.89□□□□□ -0.51
TCOF1-212ENST00000513538 SNRKQ9NRH2 765 aa11.89□□□□□ -0.51
TCOF1-212ENST00000513538 AATFQ9NY61 560 aaKnown RBP eCLIP11.89□□□□□ -0.51
TCOF1-212ENST00000513538 HERC5Q9UII4 1024 aaKnown RBP11.89□□□□□ -0.51
TCOF1-212ENST00000513538 MYH1P12882 1939 aa11.89□□□□□ -0.51
TCOF1-212ENST00000513538 PFASO15067 1338 aa11.88□□□□□ -0.51
TCOF1-212ENST00000513538 FLT1P17948 1338 aa11.88□□□□□ -0.51
TCOF1-212ENST00000513538 GDF11O95390 407 aa11.88□□□□□ -0.51
TCOF1-212ENST00000513538 SYN1P17600 705 aa11.88□□□□□ -0.51
TCOF1-212ENST00000513538 HOXA7P31268 230 aaPredicted RBP11.88□□□□□ -0.51
TCOF1-212ENST00000513538 BACE1P56817 501 aa11.88□□□□□ -0.51
TCOF1-212ENST00000513538 PABPC4Q13310 644 aaKnown RBP eCLIP11.88□□□□□ -0.51
TCOF1-212ENST00000513538 MAPKAPK5Q8IW41 473 aa11.88□□□□□ -0.51
TCOF1-212ENST00000513538 ARHGAP45Q92619 1136 aa11.88□□□□□ -0.51
TCOF1-212ENST00000513538 HMX1Q9NP08 348 aaPredicted RBP11.88□□□□□ -0.51
TCOF1-212ENST00000513538 PI4KBQ9UBF8 816 aa11.88□□□□□ -0.51
TCOF1-212ENST00000513538 OGDHLQ9ULD0 1010 aa11.88□□□□□ -0.51
TCOF1-212ENST00000513538 COL6A3P12111 3177 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms