RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 CTGFP29279 349 aa25.83■■□□□ 1.73
SQSTM1-210ENST00000506042 ATF7IPQ6VMQ6 1270 aa25.83■■□□□ 1.73
SQSTM1-210ENST00000506042 SH3BP5LQ7L8J4 393 aa25.83■■□□□ 1.73
SQSTM1-210ENST00000506042 NSUN4Q96CB9 384 aaKnown RBP25.83■■□□□ 1.73
SQSTM1-210ENST00000506042 DDX4Q9NQI0 724 aaKnown RBP25.83■■□□□ 1.73
SQSTM1-210ENST00000506042 USP17L5A8MUK1 530 aa25.82■■□□□ 1.72
SQSTM1-210ENST00000506042 SGPL1O95470 568 aa25.82■■□□□ 1.72
SQSTM1-210ENST00000506042 TFRCP02786 760 aaKnown RBP25.82■■□□□ 1.72
SQSTM1-210ENST00000506042 FXR1P51114 621 aaKnown RBP eCLIP25.82■■□□□ 1.72
SQSTM1-210ENST00000506042 TTC39AQ5SRH9 613 aa25.82■■□□□ 1.72
SQSTM1-210ENST00000506042 CERS3Q8IU89 383 aa25.82■■□□□ 1.72
SQSTM1-210ENST00000506042 PI4KBQ9UBF8 816 aa25.82■■□□□ 1.72
SQSTM1-210ENST00000506042 PTPRFP10586 1907 aa25.82■■□□□ 1.72
SQSTM1-210ENST00000506042 RHBDL3P58872 404 aa25.81■■□□□ 1.72
SQSTM1-210ENST00000506042 NAA16Q6N069 864 aaPredicted RBP25.81■■□□□ 1.72
SQSTM1-210ENST00000506042 ANKRD13CQ8N6S4 541 aa25.81■■□□□ 1.72
SQSTM1-210ENST00000506042 SHISA4Q96DD7 197 aa25.81■■□□□ 1.72
SQSTM1-210ENST00000506042 GINM1Q9NU53 330 aa25.81■■□□□ 1.72
SQSTM1-210ENST00000506042 TMOD4Q9NZQ9 345 aa25.81■■□□□ 1.72
SQSTM1-210ENST00000506042 CENPFP49454 3210 aa25.8■■□□□ 1.72
SQSTM1-210ENST00000506042 INHAP05111 366 aa25.8■■□□□ 1.72
SQSTM1-210ENST00000506042 CAP2P40123 477 aa25.8■■□□□ 1.72
SQSTM1-210ENST00000506042 SPP2Q13103 211 aa25.8■■□□□ 1.72
SQSTM1-210ENST00000506042 CRACR2BQ8N4Y2 399 aaPredicted RBP25.8■■□□□ 1.72
SQSTM1-210ENST00000506042 GPR108Q9NPR9 543 aa25.8■■□□□ 1.72
SQSTM1-210ENST00000506042 ASNSP08243 561 aa25.79■■□□□ 1.72
SQSTM1-210ENST00000506042 IRX3P78415 501 aaPredicted RBP25.79■■□□□ 1.72
SQSTM1-210ENST00000506042 CHRDL2Q6WN34 429 aa25.79■■□□□ 1.72
SQSTM1-210ENST00000506042 GABRQQ9UN88 632 aa25.79■■□□□ 1.72
SQSTM1-210ENST00000506042 TRIM27P14373 513 aa25.78■■□□□ 1.72
SQSTM1-210ENST00000506042 CCAR1Q8IX12 1150 aaKnown RBP25.78■■□□□ 1.72
SQSTM1-210ENST00000506042 UNC93B1Q9H1C4 597 aa25.78■■□□□ 1.72
SQSTM1-210ENST00000506042 PHIPQ8WWQ0 1821 aa25.78■■□□□ 1.72
SQSTM1-210ENST00000506042 MAST2Q6P0Q8 1798 aa25.77■■□□□ 1.72
SQSTM1-210ENST00000506042 EVI5O60447 810 aa25.77■■□□□ 1.72
SQSTM1-210ENST00000506042 HLA-DOAP06340 250 aa25.77■■□□□ 1.72
SQSTM1-210ENST00000506042 ZKSCAN2Q63HK3 967 aa25.77■■□□□ 1.72
SQSTM1-210ENST00000506042 GTF3C2Q8WUA4 911 aaPredicted RBP25.77■■□□□ 1.72
SQSTM1-210ENST00000506042 ATAD5Q96QE3 1844 aa25.77■■□□□ 1.72
SQSTM1-210ENST00000506042 ELNP15502 786 aa25.76■■□□□ 1.71
SQSTM1-210ENST00000506042 HMGCS2P54868 508 aa25.76■■□□□ 1.71
SQSTM1-210ENST00000506042 TBC1D9Q6ZT07 1266 aa25.76■■□□□ 1.71
SQSTM1-210ENST00000506042 FOXP4Q8IVH2 680 aaPredicted RBP25.76■■□□□ 1.71
SQSTM1-210ENST00000506042 FTSJ3Q8IY81 847 aaKnown RBP25.76■■□□□ 1.71
SQSTM1-210ENST00000506042 LOC285556D6RIA3 1793 aa25.75■■□□□ 1.71
SQSTM1-210ENST00000506042 C19orf81C9J6K1 198 aa25.75■■□□□ 1.71
SQSTM1-210ENST00000506042 HMGCRP04035 888 aa25.75■■□□□ 1.71
SQSTM1-210ENST00000506042 MCAMP43121 646 aa25.75■■□□□ 1.71
SQSTM1-210ENST00000506042 ANKLE1Q8NAG6 615 aa25.75■■□□□ 1.71
SQSTM1-210ENST00000506042 DEFB118Q96PH6 123 aa25.75■■□□□ 1.71
SQSTM1-210ENST00000506042 A0A1W2PPC1 479 aa25.74■■□□□ 1.71
SQSTM1-210ENST00000506042 SH3D19Q5HYK7 790 aa25.74■■□□□ 1.71
SQSTM1-210ENST00000506042 TREML2Q5T2D2 321 aa25.74■■□□□ 1.71
SQSTM1-210ENST00000506042 TMED8Q6PL24 325 aaPredicted RBP25.74■■□□□ 1.71
SQSTM1-210ENST00000506042 NECAB2Q7Z6G3 386 aa25.74■■□□□ 1.71
SQSTM1-210ENST00000506042 TRMT44Q8IYL2 757 aaKnown RBP25.74■■□□□ 1.71
SQSTM1-210ENST00000506042 CLUAP1Q96AJ1 413 aa25.74■■□□□ 1.71
SQSTM1-210ENST00000506042 FAM196BA6NMK8 535 aa25.73■■□□□ 1.71
SQSTM1-210ENST00000506042 PDE3AQ14432 1141 aa25.73■■□□□ 1.71
SQSTM1-210ENST00000506042 PI16Q6UXB8 463 aa25.73■■□□□ 1.71
SQSTM1-210ENST00000506042 UBE2Q1Q7Z7E8 422 aa25.73■■□□□ 1.71
SQSTM1-210ENST00000506042 WDR18Q9BV38 432 aa25.73■■□□□ 1.71
SQSTM1-210ENST00000506042 CWC22Q9HCG8 908 aaKnown RBP25.73■■□□□ 1.71
SQSTM1-210ENST00000506042 HMX1Q9NP08 348 aaPredicted RBP25.73■■□□□ 1.71
SQSTM1-210ENST00000506042 AATFQ9NY61 560 aaKnown RBP eCLIP25.73■■□□□ 1.71
SQSTM1-210ENST00000506042 TNNI3KQ59H18 835 aa25.72■■□□□ 1.71
SQSTM1-210ENST00000506042 SH3RF3Q8TEJ3 882 aaPredicted RBP25.72■■□□□ 1.71
SQSTM1-210ENST00000506042 SOCS4Q8WXH5 440 aa25.72■■□□□ 1.71
SQSTM1-210ENST00000506042 ASCC2Q9H1I8 757 aaPredicted RBP25.72■■□□□ 1.71
SQSTM1-210ENST00000506042 PAK6Q9NQU5 681 aaPredicted RBP25.72■■□□□ 1.71
SQSTM1-210ENST00000506042 FPGT-TNNI3KV9GXZ4 949 aa25.72■■□□□ 1.71
SQSTM1-210ENST00000506042 MKI67P46013 3256 aaKnown RBP25.71■■□□□ 1.71
SQSTM1-210ENST00000506042 PNMA6EA0A0J9YXQ4 647 aa25.71■■□□□ 1.71
SQSTM1-210ENST00000506042 SURF6O75683 361 aaKnown RBP25.71■■□□□ 1.71
SQSTM1-210ENST00000506042 BACE1P56817 501 aa25.71■■□□□ 1.71
SQSTM1-210ENST00000506042 PPP4CP60510 307 aa25.71■■□□□ 1.71
SQSTM1-210ENST00000506042 ZNF512BQ96KM6 892 aaPredicted RBP25.71■■□□□ 1.71
SQSTM1-210ENST00000506042 XRN2Q9H0D6 950 aaKnown RBP eCLIP25.71■■□□□ 1.713e-6■■■■■ 34.2
SQSTM1-210ENST00000506042 RPTORQ8N122 1335 aa25.7■■□□□ 1.71
SQSTM1-210ENST00000506042 USP17L10C9JJH3 530 aa25.7■■□□□ 1.7
SQSTM1-210ENST00000506042 CCDC84Q86UT8 332 aaPredicted RBP25.7■■□□□ 1.7
SQSTM1-210ENST00000506042 TGFBRAP1Q8WUH2 860 aa25.7■■□□□ 1.7
SQSTM1-210ENST00000506042 MAPK4P31152 587 aa25.69■■□□□ 1.7
SQSTM1-210ENST00000506042 MTMR2Q13614 643 aa25.69■■□□□ 1.7
SQSTM1-210ENST00000506042 ZNF384Q8TF68 577 aa25.69■■□□□ 1.7
SQSTM1-210ENST00000506042 NUDT12Q9BQG2 462 aa25.69■■□□□ 1.7
SQSTM1-210ENST00000506042 MORF4L1Q9UBU8 362 aa25.69■■□□□ 1.7
SQSTM1-210ENST00000506042 ZBTB7BO15156 539 aaPredicted RBP25.68■■□□□ 1.7
SQSTM1-210ENST00000506042 HOXA7P31268 230 aaPredicted RBP25.68■■□□□ 1.7
SQSTM1-210ENST00000506042 GPRC5AQ8NFJ5 357 aa25.68■■□□□ 1.7
SQSTM1-210ENST00000506042 SNRKQ9NRH2 765 aa25.68■■□□□ 1.7
SQSTM1-210ENST00000506042 RBM27Q9P2N5 1060 aaKnown RBP25.68■■□□□ 1.7
SQSTM1-210ENST00000506042 FRMD4AQ9P2Q2 1039 aaPredicted RBP25.68■■□□□ 1.7
SQSTM1-210ENST00000506042 FLT1P17948 1338 aa25.67■■□□□ 1.7
SQSTM1-210ENST00000506042 GLRX3O76003 335 aaKnown RBP25.67■■□□□ 1.7
SQSTM1-210ENST00000506042 ATP8B2P98198 1209 aa25.67■■□□□ 1.7
SQSTM1-210ENST00000506042 MAPKAPK5Q8IW41 473 aa25.67■■□□□ 1.7
SQSTM1-210ENST00000506042 CRISPLD2Q9H0B8 497 aa25.67■■□□□ 1.7
SQSTM1-210ENST00000506042 BCAR3O75815 825 aa25.66■■□□□ 1.7
SQSTM1-210ENST00000506042 USP5P45974 858 aa25.66■■□□□ 1.7
Retrieved 100 of 20,778 RNA–protein pairs in 1583.5 ms