RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 NLRP3Q96P20 1036 aa13.86□□□□□ -0.19
NUP54-202ENST00000502850 TTC12Q9H892 705 aaPredicted RBP13.86□□□□□ -0.19
NUP54-202ENST00000502850 TOMM22Q9NS69 142 aa13.86□□□□□ -0.19
NUP54-202ENST00000502850 CCNL1Q9UK58 526 aaPredicted RBP13.86□□□□□ -0.19
NUP54-202ENST00000502850 R3HCC1Q9Y3T6 440 aaKnown RBP13.86□□□□□ -0.19
NUP54-202ENST00000502850 MYH6P13533 1939 aa13.85□□□□□ -0.19
NUP54-202ENST00000502850 DCAF8L1A6NGE4 600 aa13.85□□□□□ -0.19
NUP54-202ENST00000502850 KIF28PB7ZC32 967 aa13.85□□□□□ -0.19
NUP54-202ENST00000502850 AP5Z1O43299 807 aa13.85□□□□□ -0.19
NUP54-202ENST00000502850 ZPR1O75312 459 aa13.85□□□□□ -0.19
NUP54-202ENST00000502850 XBP1P17861 261 aa13.85□□□□□ -0.19
NUP54-202ENST00000502850 CDC27P30260 824 aa13.85□□□□□ -0.19
NUP54-202ENST00000502850 DNTTIP2Q5QJE6 756 aaKnown RBP13.85□□□□□ -0.19
NUP54-202ENST00000502850 SETDB2Q96T68 719 aa13.85□□□□□ -0.19
NUP54-202ENST00000502850 SLC26A6Q9BXS9 759 aa13.85□□□□□ -0.19
NUP54-202ENST00000502850 TFCP2L1Q9NZI6 479 aa13.85□□□□□ -0.19
NUP54-202ENST00000502850 ABCF2Q9UG63 623 aa13.85□□□□□ -0.19
NUP54-202ENST00000502850 MINPP1Q9UNW1 487 aa13.85□□□□□ -0.19
NUP54-202ENST00000502850 TAF1LQ8IZX4 1826 aa13.85□□□□□ -0.19
NUP54-202ENST00000502850 FAM237AA0A1B0GTK4 181 aa13.84□□□□□ -0.19
NUP54-202ENST00000502850 PPFIA3O75145 1194 aa13.84□□□□□ -0.19
NUP54-202ENST00000502850 CALM1P0DP23 149 aa13.84□□□□□ -0.19
NUP54-202ENST00000502850 CALM2P0DP24 149 aa13.84□□□□□ -0.19
NUP54-202ENST00000502850 CALM3P0DP25 149 aa13.84□□□□□ -0.19
NUP54-202ENST00000502850 NDUFA8P51970 172 aa13.84□□□□□ -0.19
NUP54-202ENST00000502850 RRP12Q5JTH9 1297 aaKnown RBP13.84□□□□□ -0.19
NUP54-202ENST00000502850 SLC16A10Q8TF71 515 aa13.84□□□□□ -0.19
NUP54-202ENST00000502850 PHKBQ93100 1093 aa13.84□□□□□ -0.19
NUP54-202ENST00000502850 SGIP1Q9BQI5 828 aa13.84□□□□□ -0.19
NUP54-202ENST00000502850 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.84□□□□□ -0.19
NUP54-202ENST00000502850 KIAA1468Q9P260 1216 aa13.84□□□□□ -0.19
NUP54-202ENST00000502850 HOOK1Q9UJC3 728 aaKnown RBP13.84□□□□□ -0.19
NUP54-202ENST00000502850 COL1A1P02452 1464 aaPredicted RBP13.84□□□□□ -0.19
NUP54-202ENST00000502850 A0A1B0GVL5 298 aa13.83□□□□□ -0.2
NUP54-202ENST00000502850 SNAP23O00161 211 aa13.83□□□□□ -0.2
NUP54-202ENST00000502850 PRKAB2O43741 272 aa13.83□□□□□ -0.2
NUP54-202ENST00000502850 CUTAO60888 179 aa13.83□□□□□ -0.2
NUP54-202ENST00000502850 SLC3A2P08195 630 aaKnown RBP13.83□□□□□ -0.2
NUP54-202ENST00000502850 CHAF1AQ13111 956 aaPredicted RBP13.83□□□□□ -0.2
NUP54-202ENST00000502850 TPTE2Q6XPS3 522 aa13.83□□□□□ -0.2
NUP54-202ENST00000502850 NBPF5PQ86XG9 351 aaPredicted RBP13.83□□□□□ -0.2
NUP54-202ENST00000502850 ZNF654Q8IZM8 581 aa13.83□□□□□ -0.2
NUP54-202ENST00000502850 MIGA1Q8NAN2 632 aa13.83□□□□□ -0.2
NUP54-202ENST00000502850 SPC24Q8NBT2 197 aa13.83□□□□□ -0.2
NUP54-202ENST00000502850 KIAA1524Q8TCG1 905 aa13.83□□□□□ -0.2
NUP54-202ENST00000502850 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.83□□□□□ -0.2
NUP54-202ENST00000502850 FOXP1Q9H334 677 aaPredicted RBP13.83□□□□□ -0.2
NUP54-202ENST00000502850 FAM217BQ9NTX9 383 aaPredicted RBP13.83□□□□□ -0.2
NUP54-202ENST00000502850 RBM28Q9NW13 759 aaKnown RBP13.83□□□□□ -0.2
NUP54-202ENST00000502850 CEP131Q9UPN4 1083 aa13.83□□□□□ -0.2
NUP54-202ENST00000502850 COL4A1P02462 1669 aa13.83□□□□□ -0.2
NUP54-202ENST00000502850 SMTNL1A8MU46 457 aa13.82□□□□□ -0.2
NUP54-202ENST00000502850 RANBP6O60518 1105 aaKnown RBP13.82□□□□□ -0.2
NUP54-202ENST00000502850 ZNF202O95125 648 aa13.82□□□□□ -0.2
NUP54-202ENST00000502850 MMP1P03956 469 aa13.82□□□□□ -0.2
NUP54-202ENST00000502850 HMGB2P26583 209 aaKnown RBP13.82□□□□□ -0.2
NUP54-202ENST00000502850 GYG1P46976 350 aa13.82□□□□□ -0.2
NUP54-202ENST00000502850 RPS8P62241 208 aaKnown RBP13.82□□□□□ -0.2
NUP54-202ENST00000502850 AKAP17AQ02040 695 aaKnown RBP13.82□□□□□ -0.2
NUP54-202ENST00000502850 RILPL1Q5EBL4 403 aa13.82□□□□□ -0.2
NUP54-202ENST00000502850 AXDND1Q5T1B0 1012 aaPredicted RBP13.82□□□□□ -0.2
NUP54-202ENST00000502850 TBC1D9BQ66K14 1250 aa13.82□□□□□ -0.2
NUP54-202ENST00000502850 C11orf57Q6ZUT1 292 aaPredicted RBP13.82□□□□□ -0.2
NUP54-202ENST00000502850 FBXO33Q7Z6M2 555 aa13.82□□□□□ -0.2
NUP54-202ENST00000502850 IQCA1Q86XH1 822 aa13.82□□□□□ -0.2
NUP54-202ENST00000502850 NOSTRINQ8IVI9 506 aa13.82□□□□□ -0.2
NUP54-202ENST00000502850 ELOA2Q8IYF1 753 aaPredicted RBP13.82□□□□□ -0.2
NUP54-202ENST00000502850 RIOK1Q9BRS2 568 aaKnown RBP13.82□□□□□ -0.2
NUP54-202ENST00000502850 RNF26Q9BY78 433 aaPredicted RBP13.82□□□□□ -0.2
NUP54-202ENST00000502850 CLIP2Q9UDT6 1046 aa13.82□□□□□ -0.2
NUP54-202ENST00000502850 RTCBQ9Y3I0 505 aaKnown RBP13.82□□□□□ -0.2
NUP54-202ENST00000502850 MORC2Q9Y6X9 1032 aaPredicted RBP13.82□□□□□ -0.2
NUP54-202ENST00000502850 DYNC1I1O14576 645 aa13.82□□□□□ -0.2
NUP54-202ENST00000502850 PFKFB1P16118 471 aa13.82□□□□□ -0.2
NUP54-202ENST00000502850 RXRAP19793 462 aa13.82□□□□□ -0.2
NUP54-202ENST00000502850 SYKP43405 635 aa13.82□□□□□ -0.2
NUP54-202ENST00000502850 NLRP12P59046 1061 aa13.82□□□□□ -0.2
NUP54-202ENST00000502850 SPTY2D1Q68D10 685 aaPredicted RBP13.82□□□□□ -0.2
NUP54-202ENST00000502850 CCDC144CPQ8IYA2 1237 aa13.82□□□□□ -0.2
NUP54-202ENST00000502850 ZNF830Q96NB3 372 aaPredicted RBP13.82□□□□□ -0.2
NUP54-202ENST00000502850 FHDC1Q9C0D6 1143 aaPredicted RBP13.82□□□□□ -0.2
NUP54-202ENST00000502850 TAF1P21675 1872 aa13.81□□□□□ -0.2
NUP54-202ENST00000502850 MINDY4BA8MYZ0 360 aa13.81□□□□□ -0.2
NUP54-202ENST00000502850 MYO1BO43795 1136 aa13.81□□□□□ -0.2
NUP54-202ENST00000502850 PTPAQ15257 358 aa13.81□□□□□ -0.2
NUP54-202ENST00000502850 CATIPQ7Z7H3 387 aa13.81□□□□□ -0.2
NUP54-202ENST00000502850 FANCBQ8NB91 859 aa13.81□□□□□ -0.2
NUP54-202ENST00000502850 CCDC34Q96HJ3 373 aa13.81□□□□□ -0.2
NUP54-202ENST00000502850 FAM84BQ96KN1 310 aaPredicted RBP13.81□□□□□ -0.2
NUP54-202ENST00000502850 SYT17Q9BSW7 474 aa13.81□□□□□ -0.2
NUP54-202ENST00000502850 CRNKL1Q9BZJ0 848 aaKnown RBP13.81□□□□□ -0.2
NUP54-202ENST00000502850 KCNF1Q9H3M0 494 aa13.81□□□□□ -0.2
NUP54-202ENST00000502850 SENP2Q9HC62 589 aa13.81□□□□□ -0.2
NUP54-202ENST00000502850 HPSEQ9Y251 543 aa13.81□□□□□ -0.2
NUP54-202ENST00000502850 TNKSO95271 1327 aa13.81□□□□□ -0.2
NUP54-202ENST00000502850 BAZ2AQ9UIF9 1905 aaKnown RBP13.8□□□□□ -0.2
NUP54-202ENST00000502850 UQCRHLA0A096LP55 91 aa13.8□□□□□ -0.2
NUP54-202ENST00000502850 GNPATO15228 680 aa13.8□□□□□ -0.2
NUP54-202ENST00000502850 RRP9O43818 475 aaKnown RBP13.8□□□□□ -0.2
NUP54-202ENST00000502850 DDAH1O94760 285 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms