RNA–Protein interactions for RNA: ENST00000494623.1

CHMP3-209, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2

Gene CHMP3, Length 2,724 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-209ENST00000494623 IFNKQ9P0W0 207 aa12.92□□□□□ -0.34
CHMP3-209ENST00000494623 COL4A1P02462 1669 aa12.92□□□□□ -0.34
CHMP3-209ENST00000494623 ARAP2Q8WZ64 1704 aa12.92□□□□□ -0.34
CHMP3-209ENST00000494623 COL22A1Q8NFW1 1626 aaPredicted RBP12.92□□□□□ -0.34
CHMP3-209ENST00000494623 CCDC196A0A1B0GTZ2 297 aa12.92□□□□□ -0.34
CHMP3-209ENST00000494623 SMTNL1A8MU46 457 aa12.92□□□□□ -0.34
CHMP3-209ENST00000494623 CUTAO60888 179 aa12.92□□□□□ -0.34
CHMP3-209ENST00000494623 PRDM1O75626 825 aa12.92□□□□□ -0.34
CHMP3-209ENST00000494623 TNNT1P13805 278 aa12.92□□□□□ -0.34
CHMP3-209ENST00000494623 TOB1P50616 345 aaPredicted RBP12.92□□□□□ -0.34
CHMP3-209ENST00000494623 PIP4K2BP78356 416 aa12.92□□□□□ -0.34
CHMP3-209ENST00000494623 TBC1D9BQ66K14 1250 aa12.92□□□□□ -0.34
CHMP3-209ENST00000494623 BARGINQ6ZT62 677 aa12.92□□□□□ -0.34
CHMP3-209ENST00000494623 ESR2Q92731 530 aa12.92□□□□□ -0.34
CHMP3-209ENST00000494623 FAM84BQ96KN1 310 aaPredicted RBP12.92□□□□□ -0.34
CHMP3-209ENST00000494623 XPO4Q9C0E2 1151 aaKnown RBP12.92□□□□□ -0.34
CHMP3-209ENST00000494623 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.92□□□□□ -0.34
CHMP3-209ENST00000494623 KCNH3Q9ULD8 1083 aa12.92□□□□□ -0.34
CHMP3-209ENST00000494623 ZNF804BA4D1E1 1349 aa12.92□□□□□ -0.34
CHMP3-209ENST00000494623 AHDC1Q5TGY3 1603 aaPredicted RBP12.92□□□□□ -0.34
CHMP3-209ENST00000494623 DEXIO95424 95 aa12.91□□□□□ -0.34
CHMP3-209ENST00000494623 GTF2F1P35269 517 aaKnown RBP eCLIP12.91□□□□□ -0.34
CHMP3-209ENST00000494623 TPM4P67936 248 aa12.91□□□□□ -0.34
CHMP3-209ENST00000494623 NR5A1Q13285 461 aa12.91□□□□□ -0.34
CHMP3-209ENST00000494623 CNNM3Q8NE01 707 aa12.91□□□□□ -0.34
CHMP3-209ENST00000494623 RIOK1Q9BRS2 568 aaKnown RBP12.91□□□□□ -0.34
CHMP3-209ENST00000494623 TNKSO95271 1327 aa12.91□□□□□ -0.34
CHMP3-209ENST00000494623 NEMFO60524 1076 aa12.91□□□□□ -0.34
CHMP3-209ENST00000494623 LMOD1P29536 600 aaPredicted RBP12.91□□□□□ -0.34
CHMP3-209ENST00000494623 PTF1AQ7RTS3 328 aa12.91□□□□□ -0.34
CHMP3-209ENST00000494623 KRI1Q8N9T8 703 aaKnown RBP12.91□□□□□ -0.34
CHMP3-209ENST00000494623 DOCK2Q92608 1830 aa12.91□□□□□ -0.34
CHMP3-209ENST00000494623 WNK3Q9BYP7 1800 aa12.91□□□□□ -0.34
CHMP3-209ENST00000494623 KLRK1P26718 216 aa12.9□□□□□ -0.34
CHMP3-209ENST00000494623 NCAPHQ15003 741 aa12.9□□□□□ -0.34
CHMP3-209ENST00000494623 OXER1Q8TDS5 423 aa12.9□□□□□ -0.34
CHMP3-209ENST00000494623 MAP7D2Q96T17 732 aa12.9□□□□□ -0.34
CHMP3-209ENST00000494623 TFCP2L1Q9NZI6 479 aa12.9□□□□□ -0.34
CHMP3-209ENST00000494623 hCG_1642624A0A1W2PR95 340 aa12.9□□□□□ -0.34
CHMP3-209ENST00000494623 USP27XA6NNY8 438 aa12.9□□□□□ -0.34
CHMP3-209ENST00000494623 AKAP17AQ02040 695 aaKnown RBP12.9□□□□□ -0.34
CHMP3-209ENST00000494623 GRIN1Q05586 938 aa12.9□□□□□ -0.34
CHMP3-209ENST00000494623 SEC23AQ15436 765 aa12.9□□□□□ -0.34
CHMP3-209ENST00000494623 TMC6Q7Z403 805 aa12.9□□□□□ -0.34
CHMP3-209ENST00000494623 ZNF592Q92610 1267 aa12.9□□□□□ -0.34
CHMP3-209ENST00000494623 TRMT1Q9NXH9 659 aaKnown RBP12.9□□□□□ -0.34
CHMP3-209ENST00000494623 TUBE1Q9UJT0 475 aa12.9□□□□□ -0.34
CHMP3-209ENST00000494623 KRBA2Q6ZNG9 492 aa12.9□□□□□ -0.35
CHMP3-209ENST00000494623 METTL16Q86W50 562 aaKnown RBP12.9□□□□□ -0.35
CHMP3-209ENST00000494623 FOXP4Q8IVH2 680 aaPredicted RBP12.9□□□□□ -0.35
CHMP3-209ENST00000494623 ZSCAN10Q96SZ4 725 aaPredicted RBP12.9□□□□□ -0.35
CHMP3-209ENST00000494623 MTA3Q9BTC8 594 aa12.9□□□□□ -0.35
CHMP3-209ENST00000494623 FOXP1Q9H334 677 aaPredicted RBP12.9□□□□□ -0.35
CHMP3-209ENST00000494623 CABP5Q9NP86 173 aa12.9□□□□□ -0.35
CHMP3-209ENST00000494623 SRP68Q9UHB9 627 aaKnown RBP12.9□□□□□ -0.35
CHMP3-209ENST00000494623 ANAPC4Q9UJX5 808 aa12.9□□□□□ -0.35
CHMP3-209ENST00000494623 PCDHB6Q9Y5E3 794 aa12.9□□□□□ -0.35
CHMP3-209ENST00000494623 PHLPP1O60346 1717 aa12.89□□□□□ -0.35
CHMP3-209ENST00000494623 FAM237AA0A1B0GTK4 181 aa12.89□□□□□ -0.35
CHMP3-209ENST00000494623 FOXN1O15353 648 aa12.89□□□□□ -0.35
CHMP3-209ENST00000494623 RPS8P62241 208 aaKnown RBP12.89□□□□□ -0.35
CHMP3-209ENST00000494623 CCZ1BP86790 482 aa12.89□□□□□ -0.35
CHMP3-209ENST00000494623 CCZ1P86791 482 aaPredicted RBP12.89□□□□□ -0.35
CHMP3-209ENST00000494623 RILPL1Q5EBL4 403 aa12.89□□□□□ -0.35
CHMP3-209ENST00000494623 ENAHQ8N8S7 591 aaPredicted RBP12.89□□□□□ -0.35
CHMP3-209ENST00000494623 ZNF384Q8TF68 577 aa12.89□□□□□ -0.35
CHMP3-209ENST00000494623 BCL2L12Q9HB09 334 aa12.89□□□□□ -0.35
CHMP3-209ENST00000494623 PCDHA5Q9Y5H7 936 aa12.89□□□□□ -0.35
CHMP3-209ENST00000494623 BCL9LQ86UU0 1499 aa12.89□□□□□ -0.35
CHMP3-209ENST00000494623 COL1A1P02452 1464 aaPredicted RBP12.89□□□□□ -0.35
CHMP3-209ENST00000494623 ATP1A3P13637 1013 aa12.89□□□□□ -0.35
CHMP3-209ENST00000494623 TAF1P21675 1872 aa12.89□□□□□ -0.35
CHMP3-209ENST00000494623 IFIT1BQ5T764 474 aaKnown RBP12.89□□□□□ -0.35
CHMP3-209ENST00000494623 ZNF710Q8N1W2 664 aa12.89□□□□□ -0.35
CHMP3-209ENST00000494623 NLRP3Q96P20 1036 aa12.89□□□□□ -0.35
CHMP3-209ENST00000494623 SETDB2Q96T68 719 aa12.89□□□□□ -0.35
CHMP3-209ENST00000494623 JAG2Q9Y219 1238 aa12.89□□□□□ -0.35
CHMP3-209ENST00000494623 NID2Q14112 1375 aa12.88□□□□□ -0.35
CHMP3-209ENST00000494623 USP17L12C9JPN9 530 aa12.88□□□□□ -0.35
CHMP3-209ENST00000494623 USP17L21D6R901 530 aa12.88□□□□□ -0.35
CHMP3-209ENST00000494623 GSDMDP57764 484 aa12.88□□□□□ -0.35
CHMP3-209ENST00000494623 FANCCQ00597 558 aa12.88□□□□□ -0.35
CHMP3-209ENST00000494623 EVX2Q03828 476 aa12.88□□□□□ -0.35
CHMP3-209ENST00000494623 OLFM4Q6UX06 510 aa12.88□□□□□ -0.35
CHMP3-209ENST00000494623 NBPF5PQ86XG9 351 aaPredicted RBP12.88□□□□□ -0.35
CHMP3-209ENST00000494623 VPS54Q9P1Q0 977 aa12.88□□□□□ -0.35
CHMP3-209ENST00000494623 V9GY48 417 aaPredicted RBP12.88□□□□□ -0.35
CHMP3-209ENST00000494623 CHD4Q14839 1912 aa12.88□□□□□ -0.35
CHMP3-209ENST00000494623 POLR2DO15514 142 aaKnown RBP12.88□□□□□ -0.35
CHMP3-209ENST00000494623 SLC10A5Q5PT55 438 aa12.88□□□□□ -0.35
CHMP3-209ENST00000494623 CTR9Q6PD62 1173 aa12.88□□□□□ -0.35
CHMP3-209ENST00000494623 FBXO33Q7Z6M2 555 aa12.88□□□□□ -0.35
CHMP3-209ENST00000494623 MTERF4Q7Z6M4 381 aaKnown RBP12.88□□□□□ -0.35
CHMP3-209ENST00000494623 CATIPQ7Z7H3 387 aa12.88□□□□□ -0.35
CHMP3-209ENST00000494623 AATFQ9NY61 560 aaKnown RBP eCLIP12.88□□□□□ -0.35
CHMP3-209ENST00000494623 IMPACTQ9P2X3 320 aa12.88□□□□□ -0.35
CHMP3-209ENST00000494623 FBXO2Q9UK22 296 aaPredicted RBP12.88□□□□□ -0.35
CHMP3-209ENST00000494623 IKBKBO14920 756 aa12.87□□□□□ -0.35
CHMP3-209ENST00000494623 PTPREP23469 700 aa12.87□□□□□ -0.35
CHMP3-209ENST00000494623 HIBADHP31937 336 aaKnown RBP12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms