RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 NME1P15531 152 aaKnown RBP6.31□□□□□ -1.4
VPS13A-212ENST00000493341 SELPP16109 830 aa6.31□□□□□ -1.4
VPS13A-212ENST00000493341 EPHA1P21709 976 aa6.31□□□□□ -1.4
VPS13A-212ENST00000493341 LONRF2Q1L5Z9 754 aa6.31□□□□□ -1.4
VPS13A-212ENST00000493341 GNPTABQ3T906 1256 aa6.31□□□□□ -1.4
VPS13A-212ENST00000493341 INTS3Q68E01 1043 aaKnown RBP6.31□□□□□ -1.4
VPS13A-212ENST00000493341 HDXQ7Z353 690 aa6.31□□□□□ -1.4
VPS13A-212ENST00000493341 CCDC146Q8IYE0 955 aa6.31□□□□□ -1.4
VPS13A-212ENST00000493341 CCDC155Q8N6L0 562 aa6.31□□□□□ -1.4
VPS13A-212ENST00000493341 ZNF837Q96EG3 531 aaPredicted RBP6.31□□□□□ -1.4
VPS13A-212ENST00000493341 SLC9A7Q96T83 725 aa6.31□□□□□ -1.4
VPS13A-212ENST00000493341 A0A087X0B3 334 aa6.3□□□□□ -1.4
VPS13A-212ENST00000493341 DNAJA2O60884 412 aa6.3□□□□□ -1.4
VPS13A-212ENST00000493341 RAPGEF3O95398 923 aa6.3□□□□□ -1.4
VPS13A-212ENST00000493341 POU3F3P20264 500 aaPredicted RBP6.3□□□□□ -1.4
VPS13A-212ENST00000493341 LRFN4Q6PJG9 635 aa6.3□□□□□ -1.4
VPS13A-212ENST00000493341 RAVER1Q8IY67 606 aaKnown RBP6.3□□□□□ -1.4
VPS13A-212ENST00000493341 TAB3Q8N5C8 712 aaPredicted RBP6.3□□□□□ -1.4
VPS13A-212ENST00000493341 CDC6Q99741 560 aa6.3□□□□□ -1.4
VPS13A-212ENST00000493341 NAGPAQ9UK23 515 aa6.3□□□□□ -1.4
VPS13A-212ENST00000493341 SLC6A14Q9UN76 642 aa6.3□□□□□ -1.4
VPS13A-212ENST00000493341 GPR25O00155 361 aa6.3□□□□□ -1.4
VPS13A-212ENST00000493341 AXIN1O15169 862 aa6.3□□□□□ -1.4
VPS13A-212ENST00000493341 ECEL1O95672 775 aa6.3□□□□□ -1.4
VPS13A-212ENST00000493341 SOX5P35711 763 aa6.3□□□□□ -1.4
VPS13A-212ENST00000493341 TBX4P57082 545 aa6.3□□□□□ -1.4
VPS13A-212ENST00000493341 SLC7A5Q01650 507 aa6.3□□□□□ -1.4
VPS13A-212ENST00000493341 SV2CQ496J9 727 aa6.3□□□□□ -1.4
VPS13A-212ENST00000493341 GORABQ5T7V8 394 aa6.3□□□□□ -1.4
VPS13A-212ENST00000493341 ZNF468Q5VIY5 522 aaPredicted RBP6.3□□□□□ -1.4
VPS13A-212ENST00000493341 FOXB2Q5VYV0 432 aa6.3□□□□□ -1.4
VPS13A-212ENST00000493341 WDR75Q8IWA0 830 aaKnown RBP6.3□□□□□ -1.4
VPS13A-212ENST00000493341 ELMO3Q96BJ8 720 aa6.3□□□□□ -1.4
VPS13A-212ENST00000493341 CORO1BQ9BR76 489 aa6.3□□□□□ -1.4
VPS13A-212ENST00000493341 EPN3Q9H201 632 aa6.3□□□□□ -1.4
VPS13A-212ENST00000493341 FAM86C1Q9NVL1 165 aa6.3□□□□□ -1.4
VPS13A-212ENST00000493341 MCM8Q9UJA3 840 aa6.3□□□□□ -1.4
VPS13A-212ENST00000493341 SNCAIPQ9Y6H5 919 aa6.3□□□□□ -1.4
VPS13A-212ENST00000493341 PRAMEF27A3QJZ7 478 aa6.29□□□□□ -1.4
VPS13A-212ENST00000493341 AGRPO00253 132 aa6.29□□□□□ -1.4
VPS13A-212ENST00000493341 KCNQ2O43526 872 aa6.29□□□□□ -1.4
VPS13A-212ENST00000493341 CYP11A1P05108 521 aa6.29□□□□□ -1.4
VPS13A-212ENST00000493341 CDC27P30260 824 aa6.29□□□□□ -1.4
VPS13A-212ENST00000493341 PDE4BQ07343 736 aa6.29□□□□□ -1.4
VPS13A-212ENST00000493341 ZC3H12BQ5HYM0 836 aaKnown RBP6.29□□□□□ -1.4
VPS13A-212ENST00000493341 EXOC8Q8IYI6 725 aa6.29□□□□□ -1.4
VPS13A-212ENST00000493341 ZNF526Q8TF50 670 aaPredicted RBP6.29□□□□□ -1.4
VPS13A-212ENST00000493341 TSR2Q969E8 191 aaKnown RBP6.29□□□□□ -1.4
VPS13A-212ENST00000493341 SIN3BO75182 1162 aa6.28□□□□□ -1.4
VPS13A-212ENST00000493341 TXNDC11Q6PKC3 985 aa6.28□□□□□ -1.4
VPS13A-212ENST00000493341 KLHL6Q8WZ60 621 aa6.28□□□□□ -1.4
VPS13A-212ENST00000493341 IPO9Q96P70 1041 aaKnown RBP6.28□□□□□ -1.4
VPS13A-212ENST00000493341 LPIN3Q9BQK8 851 aa6.28□□□□□ -1.4
VPS13A-212ENST00000493341 NCOA5Q9HCD5 579 aaKnown RBP6.28□□□□□ -1.4
VPS13A-212ENST00000493341 CACNA2D2Q9NY47 1150 aa6.28□□□□□ -1.4
VPS13A-212ENST00000493341 MAGEC2Q9UBF1 373 aaPredicted RBP6.28□□□□□ -1.4
VPS13A-212ENST00000493341 CCDC163A0A0D9SF12 145 aa6.28□□□□□ -1.4
VPS13A-212ENST00000493341 DCDC2CA8MYV0 355 aa6.28□□□□□ -1.4
VPS13A-212ENST00000493341 ALG1L2C9J202 215 aa6.28□□□□□ -1.4
VPS13A-212ENST00000493341 H3BRJ5 948 aa6.28□□□□□ -1.4
VPS13A-212ENST00000493341 ALDH1L1O75891 902 aa6.28□□□□□ -1.4
VPS13A-212ENST00000493341 CCNFP41002 786 aa6.28□□□□□ -1.4
VPS13A-212ENST00000493341 FAM209AQ5JX71 171 aa6.28□□□□□ -1.4
VPS13A-212ENST00000493341 CDCP2Q5VXM1 449 aa6.28□□□□□ -1.4
VPS13A-212ENST00000493341 CNNM4Q6P4Q7 775 aa6.28□□□□□ -1.4
VPS13A-212ENST00000493341 CCAR1Q8IX12 1150 aaKnown RBP6.28□□□□□ -1.4
VPS13A-212ENST00000493341 ATL2Q8NHH9 583 aa6.28□□□□□ -1.4
VPS13A-212ENST00000493341 GMCL1Q96IK5 515 aa6.28□□□□□ -1.4
VPS13A-212ENST00000493341 EXOC2Q96KP1 924 aa6.28□□□□□ -1.4
VPS13A-212ENST00000493341 KIF2CQ99661 725 aa6.28□□□□□ -1.4
VPS13A-212ENST00000493341 CCDC86Q9H6F5 360 aaKnown RBP6.28□□□□□ -1.4
VPS13A-212ENST00000493341 CNNM2Q9H8M5 875 aa6.28□□□□□ -1.4
VPS13A-212ENST00000493341 CSADQ9Y600 493 aa6.28□□□□□ -1.4
VPS13A-212ENST00000493341 PRC1O43663 620 aa6.27□□□□□ -1.41
VPS13A-212ENST00000493341 BMP4P12644 408 aa6.27□□□□□ -1.41
VPS13A-212ENST00000493341 RAG1P15918 1043 aa6.27□□□□□ -1.41
VPS13A-212ENST00000493341 ITGA6P23229 1130 aa6.27□□□□□ -1.41
VPS13A-212ENST00000493341 POLR2BP30876 1174 aaKnown RBP6.27□□□□□ -1.41
VPS13A-212ENST00000493341 PDE3AQ14432 1141 aa6.27□□□□□ -1.41
VPS13A-212ENST00000493341 YOD1Q5VVQ6 348 aaPredicted RBP6.27□□□□□ -1.41
VPS13A-212ENST00000493341 WWC2Q6AWC2 1192 aa6.27□□□□□ -1.41
VPS13A-212ENST00000493341 FOXR1Q6PIV2 292 aa6.27□□□□□ -1.41
VPS13A-212ENST00000493341 RNF180Q86T96 592 aa6.27□□□□□ -1.41
VPS13A-212ENST00000493341 C12orf40Q86WS4 652 aa6.27□□□□□ -1.41
VPS13A-212ENST00000493341 PPP1R14AQ96A00 147 aa6.27□□□□□ -1.41
VPS13A-212ENST00000493341 DHRS4Q9BTZ2 278 aa6.27□□□□□ -1.41
VPS13A-212ENST00000493341 CHURC1-FNTBB4DL54 471 aa6.26□□□□□ -1.41
VPS13A-212ENST00000493341 TNFRSF10CO14798 259 aa6.26□□□□□ -1.41
VPS13A-212ENST00000493341 PGRP06401 933 aa6.26□□□□□ -1.41
VPS13A-212ENST00000493341 MAOBP27338 520 aa6.26□□□□□ -1.41
VPS13A-212ENST00000493341 ADH7P40394 386 aa6.26□□□□□ -1.41
VPS13A-212ENST00000493341 SMCPP49901 116 aaPredicted RBP6.26□□□□□ -1.41
VPS13A-212ENST00000493341 POU4F3Q15319 338 aa6.26□□□□□ -1.41
VPS13A-212ENST00000493341 PSAPL1Q6NUJ1 521 aa6.26□□□□□ -1.41
VPS13A-212ENST00000493341 TNFRSF25Q93038 417 aa6.26□□□□□ -1.41
VPS13A-212ENST00000493341 CLUHP3Q96NS8 147 aa6.26□□□□□ -1.41
VPS13A-212ENST00000493341 RUSC1Q9BVN2 902 aa6.26□□□□□ -1.41
VPS13A-212ENST00000493341 LRP2BPQ9P2M1 347 aa6.26□□□□□ -1.41
VPS13A-212ENST00000493341 ZNF214Q9UL59 606 aaPredicted RBP6.26□□□□□ -1.41
VPS13A-212ENST00000493341 MRPS23Q9Y3D9 190 aaKnown RBP6.26□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms