RNA–Protein interactions for RNA: ENST00000490516.5

EXOSC3-207, Transcript of exosome component 3, humanhuman

TSL 2

Gene EXOSC3, Length 773 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC3-207ENST00000490516 SPINK5Q9NQ38 1064 aaPredicted RBP17.27■□□□□ 0.36
EXOSC3-207ENST00000490516 DDTLA6NHG4 134 aaPredicted RBP17.26■□□□□ 0.35
EXOSC3-207ENST00000490516 PRDX5P30044 214 aa17.26■□□□□ 0.35
EXOSC3-207ENST00000490516 HMGCS2P54868 508 aa17.26■□□□□ 0.35
EXOSC3-207ENST00000490516 RTP1P59025 263 aa17.26■□□□□ 0.35
EXOSC3-207ENST00000490516 SPP2Q13103 211 aa17.26■□□□□ 0.35
EXOSC3-207ENST00000490516 WDR66Q8TBY9 1149 aa17.26■□□□□ 0.35
EXOSC3-207ENST00000490516 MORF4L1Q9UBU8 362 aa17.26■□□□□ 0.35
EXOSC3-207ENST00000490516 NCOR1O75376 2440 aa17.25■□□□□ 0.35
EXOSC3-207ENST00000490516 PDE8BO95263 885 aa17.25■□□□□ 0.35
EXOSC3-207ENST00000490516 ZEB1P37275 1124 aaPredicted RBP17.25■□□□□ 0.35
EXOSC3-207ENST00000490516 GRIN2CQ14957 1233 aa17.25■□□□□ 0.35
EXOSC3-207ENST00000490516 BADQ92934 168 aa17.25■□□□□ 0.35
EXOSC3-207ENST00000490516 KAZALD1Q96I82 304 aa17.25■□□□□ 0.35
EXOSC3-207ENST00000490516 SUCLG2Q96I99 432 aa17.25■□□□□ 0.35
EXOSC3-207ENST00000490516 ATP11BQ9Y2G3 1177 aa17.25■□□□□ 0.35
EXOSC3-207ENST00000490516 ENTPD3O75355 529 aa17.24■□□□□ 0.35
EXOSC3-207ENST00000490516 TRMT44Q8IYL2 757 aaKnown RBP17.24■□□□□ 0.35
EXOSC3-207ENST00000490516 SOCS4Q8WXH5 440 aa17.24■□□□□ 0.35
EXOSC3-207ENST00000490516 USP6NLQ92738 828 aa17.24■□□□□ 0.35
EXOSC3-207ENST00000490516 IDI2Q9BXS1 227 aa17.24■□□□□ 0.35
EXOSC3-207ENST00000490516 PRDM5Q9NQX1 630 aaPredicted RBP17.24■□□□□ 0.35
EXOSC3-207ENST00000490516 C9orf78Q9NZ63 289 aaPredicted RBP17.24■□□□□ 0.35
EXOSC3-207ENST00000490516 BDP1A6H8Y1 2624 aa17.24■□□□□ 0.35
EXOSC3-207ENST00000490516 FAM196BA6NMK8 535 aa17.23■□□□□ 0.35
EXOSC3-207ENST00000490516 PABPC4Q13310 644 aaKnown RBP eCLIP17.23■□□□□ 0.35
EXOSC3-207ENST00000490516 ADAMTS19Q8TE59 1207 aa17.23■□□□□ 0.35
EXOSC3-207ENST00000490516 TXNRD2Q9NNW7 524 aa17.23■□□□□ 0.35
EXOSC3-207ENST00000490516 DDX4Q9NQI0 724 aaKnown RBP17.23■□□□□ 0.35
EXOSC3-207ENST00000490516 RFX7Q2KHR2 1363 aa17.23■□□□□ 0.35
EXOSC3-207ENST00000490516 PDE3AQ14432 1141 aa17.22■□□□□ 0.35
EXOSC3-207ENST00000490516 ZNF280CQ8ND82 737 aa17.22■□□□□ 0.35
EXOSC3-207ENST00000490516 PPM1EQ8WY54 764 aa17.22■□□□□ 0.35
EXOSC3-207ENST00000490516 TCF20Q9UGU0 1960 aaKnown RBP17.21■□□□□ 0.35
EXOSC3-207ENST00000490516 LDHBP07195 334 aaKnown RBP17.21■□□□□ 0.35
EXOSC3-207ENST00000490516 IFIT1P09914 478 aaKnown RBP17.21■□□□□ 0.35
EXOSC3-207ENST00000490516 FGFR2P21802 821 aa17.21■□□□□ 0.35
EXOSC3-207ENST00000490516 RGS2P41220 211 aa17.21■□□□□ 0.35
EXOSC3-207ENST00000490516 PICALMQ13492 652 aa17.21■□□□□ 0.35
EXOSC3-207ENST00000490516 GPRC5AQ8NFJ5 357 aa17.21■□□□□ 0.35
EXOSC3-207ENST00000490516 ASB2Q96Q27 587 aa17.21■□□□□ 0.35
EXOSC3-207ENST00000490516 P2RX7Q99572 595 aaKnown RBP17.21■□□□□ 0.35
EXOSC3-207ENST00000490516 KIF16BQ96L93 1317 aa17.21■□□□□ 0.34
EXOSC3-207ENST00000490516 IRX3P78415 501 aaPredicted RBP17.2■□□□□ 0.34
EXOSC3-207ENST00000490516 PUM3Q15397 648 aaKnown RBP17.2■□□□□ 0.34
EXOSC3-207ENST00000490516 MORN1Q5T089 497 aa17.2■□□□□ 0.34
EXOSC3-207ENST00000490516 SH3RF1Q7Z6J0 888 aa17.2■□□□□ 0.34
EXOSC3-207ENST00000490516 KLHDC4Q8TBB5 520 aa17.2■□□□□ 0.34
EXOSC3-207ENST00000490516 ATXN2LQ8WWM7 1075 aaKnown RBP17.2■□□□□ 0.34
EXOSC3-207ENST00000490516 UHRF1Q96T88 793 aaPredicted RBP17.2■□□□□ 0.34
EXOSC3-207ENST00000490516 APBA2Q99767 749 aa17.2■□□□□ 0.34
EXOSC3-207ENST00000490516 PORCNQ9H237 461 aa17.2■□□□□ 0.34
EXOSC3-207ENST00000490516 MAPK4P31152 587 aa17.19■□□□□ 0.34
EXOSC3-207ENST00000490516 Q3C1V9 767 aa17.19■□□□□ 0.34
EXOSC3-207ENST00000490516 SH3D19Q5HYK7 790 aa17.19■□□□□ 0.34
EXOSC3-207ENST00000490516 GPR142Q7Z601 462 aa17.19■□□□□ 0.34
EXOSC3-207ENST00000490516 RNPC3Q96LT9 517 aaKnown RBP17.19■□□□□ 0.34
EXOSC3-207ENST00000490516 BICC1Q9H694 974 aaKnown RBP17.19■□□□□ 0.34
EXOSC3-207ENST00000490516 FLRT1Q9NZU1 646 aa17.19■□□□□ 0.34
EXOSC3-207ENST00000490516 DDX20Q9UHI6 824 aaKnown RBP17.19■□□□□ 0.34
EXOSC3-207ENST00000490516 TRIM43BA6NCK2 446 aa17.18■□□□□ 0.34
EXOSC3-207ENST00000490516 DNM1LO00429 736 aa17.18■□□□□ 0.34
EXOSC3-207ENST00000490516 NBPF7P0C2Y1 421 aaPredicted RBP17.18■□□□□ 0.34
EXOSC3-207ENST00000490516 CNGA1P29973 690 aa17.18■□□□□ 0.34
EXOSC3-207ENST00000490516 HERVK_113P62684 666 aa17.18■□□□□ 0.34
EXOSC3-207ENST00000490516 RRP1BQ14684 758 aaKnown RBP17.18■□□□□ 0.34
EXOSC3-207ENST00000490516 TRIM60Q495X7 471 aa17.18■□□□□ 0.34
EXOSC3-207ENST00000490516 GJC2Q5T442 439 aaPredicted RBP17.18■□□□□ 0.34
EXOSC3-207ENST00000490516 SLC39A5Q6ZMH5 540 aa17.18■□□□□ 0.34
EXOSC3-207ENST00000490516 LPAR1Q92633 364 aa17.18■□□□□ 0.34
EXOSC3-207ENST00000490516 TRIM43Q96BQ3 446 aaPredicted RBP17.18■□□□□ 0.34
EXOSC3-207ENST00000490516 OSBPL5Q9H0X9 879 aaPredicted RBP17.18■□□□□ 0.34
EXOSC3-207ENST00000490516 XPO5Q9HAV4 1204 aaKnown RBP eCLIP17.18■□□□□ 0.34
EXOSC3-207ENST00000490516 PDLIM7Q9NR12 457 aa17.18■□□□□ 0.34
EXOSC3-207ENST00000490516 THEGQ9P2T0 379 aa17.18■□□□□ 0.34
EXOSC3-207ENST00000490516 RBPJLQ9UBG7 517 aa17.18■□□□□ 0.34
EXOSC3-207ENST00000490516 SYNGAP1Q96PV0 1343 aa17.18■□□□□ 0.34
EXOSC3-207ENST00000490516 MYO9BQ13459 2157 aa17.18■□□□□ 0.34
EXOSC3-207ENST00000490516 DNAJB2P25686 324 aa17.17■□□□□ 0.34
EXOSC3-207ENST00000490516 EPHB4P54760 987 aa17.17■□□□□ 0.34
EXOSC3-207ENST00000490516 PLEKHH3Q7Z736 793 aa17.17■□□□□ 0.34
EXOSC3-207ENST00000490516 CCAR1Q8IX12 1150 aaKnown RBP17.17■□□□□ 0.34
EXOSC3-207ENST00000490516 ZNF576Q9H609 170 aa17.17■□□□□ 0.34
EXOSC3-207ENST00000490516 USP17L5A8MUK1 530 aa17.16■□□□□ 0.34
EXOSC3-207ENST00000490516 TBC1D12O60347 775 aa17.16■□□□□ 0.34
EXOSC3-207ENST00000490516 ALDH1L1O75891 902 aa17.16■□□□□ 0.34
EXOSC3-207ENST00000490516 SLC5A1P13866 664 aa17.16■□□□□ 0.34
EXOSC3-207ENST00000490516 ERVK-9P63128 1117 aa17.16■□□□□ 0.34
EXOSC3-207ENST00000490516 ERVK-24P63145 666 aa17.16■□□□□ 0.34
EXOSC3-207ENST00000490516 POTEEQ6S8J3 1075 aa17.16■□□□□ 0.34
EXOSC3-207ENST00000490516 SLC4A10Q6U841 1118 aa17.16■□□□□ 0.34
EXOSC3-207ENST00000490516 ANKRD44Q8N8A2 993 aa17.16■□□□□ 0.34
EXOSC3-207ENST00000490516 NDUFB9Q9Y6M9 179 aa17.16■□□□□ 0.34
EXOSC3-207ENST00000490516 GAKO14976 1311 aa17.16■□□□□ 0.34
EXOSC3-207ENST00000490516 PLXNA1Q9UIW2 1896 aa17.16■□□□□ 0.34
EXOSC3-207ENST00000490516 VAMP4O75379 141 aa17.15■□□□□ 0.34
EXOSC3-207ENST00000490516 ITGB8P26012 769 aa17.15■□□□□ 0.34
EXOSC3-207ENST00000490516 HOXA7P31268 230 aaPredicted RBP17.15■□□□□ 0.34
EXOSC3-207ENST00000490516 MRPS5P82675 430 aaKnown RBP17.15■□□□□ 0.34
EXOSC3-207ENST00000490516 MAP2K5Q13163 448 aa17.15■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 74.2 ms