RNA–Protein interactions for RNA: ENST00000488594.5

GGPS1-206, Transcript of geranylgeranyl diphosphate synthase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GGPS1, Length 1,396 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGPS1-206ENST00000488594 PABPC4Q13310 644 aaKnown RBP eCLIP23.52■■□□□ 1.36
GGPS1-206ENST00000488594 TREML2Q5T2D2 321 aa23.52■■□□□ 1.36
GGPS1-206ENST00000488594 GORABQ5T7V8 394 aa23.52■■□□□ 1.36
GGPS1-206ENST00000488594 ZNF280CQ8ND82 737 aa23.52■■□□□ 1.36
GGPS1-206ENST00000488594 ZNF384Q8TF68 577 aa23.52■■□□□ 1.36
GGPS1-206ENST00000488594 DEFB118Q96PH6 123 aa23.52■■□□□ 1.36
GGPS1-206ENST00000488594 FRMD4AQ9P2Q2 1039 aaPredicted RBP23.52■■□□□ 1.36
GGPS1-206ENST00000488594 EVI5O60447 810 aa23.51■■□□□ 1.35
GGPS1-206ENST00000488594 RARSP54136 660 aaKnown RBP23.51■■□□□ 1.35
GGPS1-206ENST00000488594 SPP2Q13103 211 aa23.51■■□□□ 1.35
GGPS1-206ENST00000488594 CCDC84Q86UT8 332 aaPredicted RBP23.51■■□□□ 1.35
GGPS1-206ENST00000488594 NSUN4Q96CB9 384 aaKnown RBP23.51■■□□□ 1.35
GGPS1-206ENST00000488594 PTPRFP10586 1907 aa23.5■■□□□ 1.35
GGPS1-206ENST00000488594 CRISPLD2Q9H0B8 497 aa23.5■■□□□ 1.35
GGPS1-206ENST00000488594 TAOK2Q9UL54 1235 aa23.5■■□□□ 1.35
GGPS1-206ENST00000488594 PHIPQ8WWQ0 1821 aa23.49■■□□□ 1.35
GGPS1-206ENST00000488594 A0A1W2PPC1 479 aa23.49■■□□□ 1.35
GGPS1-206ENST00000488594 FAM196BA6NMK8 535 aa23.49■■□□□ 1.35
GGPS1-206ENST00000488594 ARID4AP29374 1257 aaPredicted RBP23.49■■□□□ 1.35
GGPS1-206ENST00000488594 CAP2P40123 477 aa23.49■■□□□ 1.35
GGPS1-206ENST00000488594 RAI14Q9P0K7 980 aa23.49■■□□□ 1.35
GGPS1-206ENST00000488594 HERC5Q9UII4 1024 aaKnown RBP23.49■■□□□ 1.35
GGPS1-206ENST00000488594 AS3MTQ9HBK9 375 aa23.48■■□□□ 1.35
GGPS1-206ENST00000488594 USP17L5A8MUK1 530 aa23.47■■□□□ 1.35
GGPS1-206ENST00000488594 HMGCS2P54868 508 aa23.47■■□□□ 1.35
GGPS1-206ENST00000488594 PI16Q6UXB8 463 aa23.47■■□□□ 1.35
GGPS1-206ENST00000488594 TBC1D9Q6ZT07 1266 aa23.47■■□□□ 1.35
GGPS1-206ENST00000488594 NOL10Q9BSC4 688 aaKnown RBP23.47■■□□□ 1.35
GGPS1-206ENST00000488594 IPO8O15397 1037 aaKnown RBP23.46■■□□□ 1.35
GGPS1-206ENST00000488594 HMGCRP04035 888 aa23.46■■□□□ 1.35
GGPS1-206ENST00000488594 UQCRFS1P1P0C7P4 283 aa23.46■■□□□ 1.35
GGPS1-206ENST00000488594 SH3D19Q5HYK7 790 aa23.46■■□□□ 1.35
GGPS1-206ENST00000488594 TEX11Q8IYF3 940 aa23.46■■□□□ 1.35
GGPS1-206ENST00000488594 XRN2Q9H0D6 950 aaKnown RBP eCLIP23.46■■□□□ 1.35
GGPS1-206ENST00000488594 DHX36Q9H2U1 1008 aaKnown RBP23.46■■□□□ 1.35
GGPS1-206ENST00000488594 LRP2BPQ9P2M1 347 aa23.46■■□□□ 1.35
GGPS1-206ENST00000488594 PI4KBQ9UBF8 816 aa23.46■■□□□ 1.35
GGPS1-206ENST00000488594 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP23.46■■□□□ 1.35
GGPS1-206ENST00000488594 RANBP2P49792 3224 aaKnown RBP23.45■■□□□ 1.35
GGPS1-206ENST00000488594 GNAI2P04899 355 aa23.45■■□□□ 1.34
GGPS1-206ENST00000488594 G3BP1Q13283 466 aaKnown RBP eCLIP23.45■■□□□ 1.34
GGPS1-206ENST00000488594 NECAB2Q7Z6G3 386 aa23.45■■□□□ 1.34
GGPS1-206ENST00000488594 ANKLE1Q8NAG6 615 aa23.45■■□□□ 1.34
GGPS1-206ENST00000488594 ASCC2Q9H1I8 757 aaPredicted RBP23.45■■□□□ 1.34
GGPS1-206ENST00000488594 BAG3O95817 575 aa23.44■■□□□ 1.34
GGPS1-206ENST00000488594 PLCG2P16885 1265 aa23.44■■□□□ 1.34
GGPS1-206ENST00000488594 PAWRQ96IZ0 340 aaKnown RBP23.44■■□□□ 1.34
GGPS1-206ENST00000488594 LOC285556D6RIA3 1793 aa23.43■■□□□ 1.34
GGPS1-206ENST00000488594 MCAMP43121 646 aa23.43■■□□□ 1.34
GGPS1-206ENST00000488594 WDR18Q9BV38 432 aa23.43■■□□□ 1.34
GGPS1-206ENST00000488594 MORF4L1Q9UBU8 362 aa23.43■■□□□ 1.34
GGPS1-206ENST00000488594 GJD2Q9UKL4 321 aa23.43■■□□□ 1.34
GGPS1-206ENST00000488594 ASNSP08243 561 aa23.42■■□□□ 1.34
GGPS1-206ENST00000488594 RRP1BQ14684 758 aaKnown RBP23.42■■□□□ 1.34
GGPS1-206ENST00000488594 SH3RF3Q8TEJ3 882 aaPredicted RBP23.42■■□□□ 1.34
GGPS1-206ENST00000488594 HMX1Q9NP08 348 aaPredicted RBP23.42■■□□□ 1.34
GGPS1-206ENST00000488594 RPTORQ8N122 1335 aa23.42■■□□□ 1.34
GGPS1-206ENST00000488594 SZT2Q5T011 3432 aa23.41■■□□□ 1.34
GGPS1-206ENST00000488594 IGSF3O75054 1194 aa23.41■■□□□ 1.34
GGPS1-206ENST00000488594 IRX3P78415 501 aaPredicted RBP23.41■■□□□ 1.34
GGPS1-206ENST00000488594 TMOD4Q9NZQ9 345 aa23.41■■□□□ 1.34
GGPS1-206ENST00000488594 TRIM27P14373 513 aa23.4■■□□□ 1.34
GGPS1-206ENST00000488594 BACE1P56817 501 aa23.4■■□□□ 1.34
GGPS1-206ENST00000488594 MTMR2Q13614 643 aa23.4■■□□□ 1.34
GGPS1-206ENST00000488594 NAA16Q6N069 864 aaPredicted RBP23.4■■□□□ 1.34
GGPS1-206ENST00000488594 GINM1Q9NU53 330 aa23.4■■□□□ 1.34
GGPS1-206ENST00000488594 PNMA6EA0A0J9YXQ4 647 aa23.4■■□□□ 1.34
GGPS1-206ENST00000488594 C19orf81C9J6K1 198 aa23.4■■□□□ 1.34
GGPS1-206ENST00000488594 HOXA7P31268 230 aaPredicted RBP23.4■■□□□ 1.34
GGPS1-206ENST00000488594 PPP4CP60510 307 aa23.4■■□□□ 1.34
GGPS1-206ENST00000488594 ATF7IPQ6VMQ6 1270 aa23.4■■□□□ 1.34
GGPS1-206ENST00000488594 FOXP4Q8IVH2 680 aaPredicted RBP23.4■■□□□ 1.34
GGPS1-206ENST00000488594 GPR108Q9NPR9 543 aa23.4■■□□□ 1.34
GGPS1-206ENST00000488594 AATFQ9NY61 560 aaKnown RBP eCLIP23.4■■□□□ 1.34
GGPS1-206ENST00000488594 CCDC158Q5M9N0 1113 aa23.39■■□□□ 1.33
GGPS1-206ENST00000488594 METTL16Q86W50 562 aaKnown RBP23.39■■□□□ 1.33
GGPS1-206ENST00000488594 DIS3LQ8TF46 1054 aaKnown RBP23.39■■□□□ 1.33
GGPS1-206ENST00000488594 SOCS4Q8WXH5 440 aa23.39■■□□□ 1.33
GGPS1-206ENST00000488594 TRIM34Q9BYJ4 488 aa23.39■■□□□ 1.33
GGPS1-206ENST00000488594 NBPF3Q9H094 633 aa23.39■■□□□ 1.33
GGPS1-206ENST00000488594 STAP2Q9UGK3 403 aa23.39■■□□□ 1.33
GGPS1-206ENST00000488594 TTC39AQ5SRH9 613 aa23.38■■□□□ 1.33
GGPS1-206ENST00000488594 CRACR2BQ8N4Y2 399 aaPredicted RBP23.38■■□□□ 1.33
GGPS1-206ENST00000488594 GPRC5AQ8NFJ5 357 aa23.38■■□□□ 1.33
GGPS1-206ENST00000488594 DOCK3Q8IZD9 2030 aa23.37■■□□□ 1.33
GGPS1-206ENST00000488594 XRCC5P13010 732 aaKnown RBP23.37■■□□□ 1.33
GGPS1-206ENST00000488594 TGFBRAP1Q8WUH2 860 aa23.37■■□□□ 1.33
GGPS1-206ENST00000488594 ATAD5Q96QE3 1844 aa23.36■■□□□ 1.33
GGPS1-206ENST00000488594 FLT1P17948 1338 aa23.36■■□□□ 1.33
GGPS1-206ENST00000488594 BMP8BP34820 402 aa23.36■■□□□ 1.33
GGPS1-206ENST00000488594 TNNI3KQ59H18 835 aa23.36■■□□□ 1.33
GGPS1-206ENST00000488594 MAPKAPK5Q8IW41 473 aa23.36■■□□□ 1.33
GGPS1-206ENST00000488594 TRMT44Q8IYL2 757 aaKnown RBP23.36■■□□□ 1.33
GGPS1-206ENST00000488594 GTF3C2Q8WUA4 911 aaPredicted RBP23.36■■□□□ 1.33
GGPS1-206ENST00000488594 TRIB2Q92519 343 aa23.36■■□□□ 1.33
GGPS1-206ENST00000488594 FRAT1Q92837 279 aaPredicted RBP23.36■■□□□ 1.33
GGPS1-206ENST00000488594 ZNF512BQ96KM6 892 aaPredicted RBP23.36■■□□□ 1.33
GGPS1-206ENST00000488594 NUDT12Q9BQG2 462 aa23.36■■□□□ 1.33
GGPS1-206ENST00000488594 SNRKQ9NRH2 765 aa23.36■■□□□ 1.33
GGPS1-206ENST00000488594 FPGT-TNNI3KV9GXZ4 949 aa23.36■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms