RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 GIMAP6Q6P9H5 292 aa14.23□□□□□ -0.13
HDAC6-230ENST00000488543 LRSAM1Q6UWE0 723 aa14.23□□□□□ -0.13
HDAC6-230ENST00000488543 TAOK3Q9H2K8 898 aa14.23□□□□□ -0.13
HDAC6-230ENST00000488543 CNNM2Q9H8M5 875 aa14.23□□□□□ -0.13
HDAC6-230ENST00000488543 DCP1AQ9NPI6 582 aaPredicted RBP14.23□□□□□ -0.13
HDAC6-230ENST00000488543 EIF2AK3Q9NZJ5 1116 aaKnown RBP14.23□□□□□ -0.13
HDAC6-230ENST00000488543 ZSWIM5Q9P217 1185 aa14.23□□□□□ -0.13
HDAC6-230ENST00000488543 ANGEL1Q9UNK9 670 aaKnown RBP14.23□□□□□ -0.13
HDAC6-230ENST00000488543 DAGLAQ9Y4D2 1042 aa14.23□□□□□ -0.13
HDAC6-230ENST00000488543 GPR75-ASB3A0A0A6YYF3 556 aa14.23□□□□□ -0.13
HDAC6-230ENST00000488543 PTPDC1A2A3K4 754 aa14.23□□□□□ -0.13
HDAC6-230ENST00000488543 KDM4AO75164 1064 aa14.23□□□□□ -0.13
HDAC6-230ENST00000488543 LDHCP07864 332 aa14.23□□□□□ -0.13
HDAC6-230ENST00000488543 PRELPP51888 382 aa14.23□□□□□ -0.13
HDAC6-230ENST00000488543 RASSF7Q02833 373 aa14.23□□□□□ -0.13
HDAC6-230ENST00000488543 MFSD6Q6ZSS7 791 aa14.23□□□□□ -0.13
HDAC6-230ENST00000488543 TGFBRAP1Q8WUH2 860 aa14.23□□□□□ -0.13
HDAC6-230ENST00000488543 DDX11Q96FC9 970 aa14.23□□□□□ -0.13
HDAC6-230ENST00000488543 TMEM87BQ96K49 555 aa14.23□□□□□ -0.13
HDAC6-230ENST00000488543 KRT23Q9C075 422 aa14.23□□□□□ -0.13
HDAC6-230ENST00000488543 NAP1L2Q9ULW6 460 aaPredicted RBP14.23□□□□□ -0.13
HDAC6-230ENST00000488543 BRCA1P38398 1863 aaKnown RBP14.23□□□□□ -0.13
HDAC6-230ENST00000488543 GOLGA8BA8MQT2 603 aa14.22□□□□□ -0.13
HDAC6-230ENST00000488543 USP17L12C9JPN9 530 aa14.22□□□□□ -0.13
HDAC6-230ENST00000488543 USP17L21D6R901 530 aa14.22□□□□□ -0.13
HDAC6-230ENST00000488543 IARSP41252 1262 aaKnown RBP14.22□□□□□ -0.13
HDAC6-230ENST00000488543 SOGA3Q5TF21 947 aa14.22□□□□□ -0.13
HDAC6-230ENST00000488543 CTR9Q6PD62 1173 aa14.22□□□□□ -0.13
HDAC6-230ENST00000488543 CRNKL1Q9BZJ0 848 aaKnown RBP14.22□□□□□ -0.13
HDAC6-230ENST00000488543 LY9Q9HBG7 655 aa14.22□□□□□ -0.13
HDAC6-230ENST00000488543 ZBTB12Q9Y330 459 aaPredicted RBP14.22□□□□□ -0.13
HDAC6-230ENST00000488543 ECM29Q5VYK3 1845 aa14.22□□□□□ -0.13
HDAC6-230ENST00000488543 MYH15Q9Y2K3 1946 aa14.22□□□□□ -0.13
HDAC6-230ENST00000488543 NAV1Q8NEY1 1877 aa14.22□□□□□ -0.13
HDAC6-230ENST00000488543 CYP2D6P10635 497 aa14.22□□□□□ -0.13
HDAC6-230ENST00000488543 PPP4CP60510 307 aa14.22□□□□□ -0.13
HDAC6-230ENST00000488543 USP48Q86UV5 1035 aa14.22□□□□□ -0.13
HDAC6-230ENST00000488543 RAB11FIP4Q86YS3 637 aa14.22□□□□□ -0.13
HDAC6-230ENST00000488543 FAM163AQ96GL9 167 aaPredicted RBP14.22□□□□□ -0.13
HDAC6-230ENST00000488543 CNPY2Q9Y2B0 182 aa14.22□□□□□ -0.13
HDAC6-230ENST00000488543 PSMD14O00487 310 aa14.21□□□□□ -0.13
HDAC6-230ENST00000488543 BAG3O95817 575 aa14.21□□□□□ -0.13
HDAC6-230ENST00000488543 USP17L8P0C7I0 530 aa14.21□□□□□ -0.13
HDAC6-230ENST00000488543 MSNP26038 577 aaKnown RBP14.21□□□□□ -0.13
HDAC6-230ENST00000488543 RHBDL3P58872 404 aa14.21□□□□□ -0.13
HDAC6-230ENST00000488543 TMEM87AQ8NBN3 555 aa14.21□□□□□ -0.13
HDAC6-230ENST00000488543 USP5P45974 858 aa14.21□□□□□ -0.13
HDAC6-230ENST00000488543 HMGN5P82970 282 aaKnown RBP14.21□□□□□ -0.13
HDAC6-230ENST00000488543 SGMS1Q86VZ5 419 aa14.21□□□□□ -0.13
HDAC6-230ENST00000488543 MAPKAPK5Q8IW41 473 aa14.21□□□□□ -0.13
HDAC6-230ENST00000488543 SYT17Q9BSW7 474 aa14.21□□□□□ -0.13
HDAC6-230ENST00000488543 RNF41Q9H4P4 317 aaPredicted RBP14.21□□□□□ -0.13
HDAC6-230ENST00000488543 MKRN1Q9UHC7 482 aaKnown RBP14.21□□□□□ -0.13
HDAC6-230ENST00000488543 GAKO14976 1311 aa14.21□□□□□ -0.14
HDAC6-230ENST00000488543 FGRP09769 529 aa14.2□□□□□ -0.14
HDAC6-230ENST00000488543 FDPSP14324 419 aaKnown RBP14.2□□□□□ -0.14
HDAC6-230ENST00000488543 TMEM67Q5HYA8 995 aa14.2□□□□□ -0.14
HDAC6-230ENST00000488543 RRP12Q5JTH9 1297 aaKnown RBP14.2□□□□□ -0.14
HDAC6-230ENST00000488543 NOL10Q9BSC4 688 aaKnown RBP14.2□□□□□ -0.14
HDAC6-230ENST00000488543 ATP8A2Q9NTI2 1148 aa14.2□□□□□ -0.14
HDAC6-230ENST00000488543 MCM9Q9NXL9 1143 aa14.2□□□□□ -0.14
HDAC6-230ENST00000488543 SUGT1Q9Y2Z0 365 aa14.2□□□□□ -0.14
HDAC6-230ENST00000488543 DDX60LQ5H9U9 1706 aaKnown RBP14.2□□□□□ -0.14
HDAC6-230ENST00000488543 ZNF646O15015 1829 aaPredicted RBP14.2□□□□□ -0.14
HDAC6-230ENST00000488543 LIFRP42702 1097 aa14.2□□□□□ -0.14
HDAC6-230ENST00000488543 CRKP46108 304 aa14.2□□□□□ -0.14
HDAC6-230ENST00000488543 APOBEC3HQ6NTF7 200 aaKnown RBP14.2□□□□□ -0.14
HDAC6-230ENST00000488543 APOA5Q6Q788 366 aa14.2□□□□□ -0.14
HDAC6-230ENST00000488543 NIM1KQ8IY84 436 aa14.2□□□□□ -0.14
HDAC6-230ENST00000488543 CHMP4CQ96CF2 233 aa14.2□□□□□ -0.14
HDAC6-230ENST00000488543 SAP30BPQ9UHR5 308 aaKnown RBP14.2□□□□□ -0.14
HDAC6-230ENST00000488543 ZNRF3Q9ULT6 936 aa14.2□□□□□ -0.14
HDAC6-230ENST00000488543 ATP6V1DQ9Y5K8 247 aa14.2□□□□□ -0.14
HDAC6-230ENST00000488543 PRDM1O75626 825 aa14.19□□□□□ -0.14
HDAC6-230ENST00000488543 RBM5P52756 815 aaKnown RBP eCLIP14.19□□□□□ -0.14
HDAC6-230ENST00000488543 CXCL9Q07325 125 aa14.19□□□□□ -0.14
HDAC6-230ENST00000488543 SBK1Q52WX2 424 aa14.19□□□□□ -0.14
HDAC6-230ENST00000488543 FERMT3Q86UX7 667 aa14.19□□□□□ -0.14
HDAC6-230ENST00000488543 TEX11Q8IYF3 940 aa14.19□□□□□ -0.14
HDAC6-230ENST00000488543 TOMM22Q9NS69 142 aa14.19□□□□□ -0.14
HDAC6-230ENST00000488543 DDX52Q9Y2R4 599 aaKnown RBP eCLIP14.19□□□□□ -0.14
HDAC6-230ENST00000488543 FOCADQ5VW36 1801 aa14.19□□□□□ -0.14
HDAC6-230ENST00000488543 IFIT3O14879 490 aaKnown RBP14.19□□□□□ -0.14
HDAC6-230ENST00000488543 PPFIA3O75145 1194 aa14.19□□□□□ -0.14
HDAC6-230ENST00000488543 CACNB3P54284 484 aa14.19□□□□□ -0.14
HDAC6-230ENST00000488543 DNM1Q05193 864 aaKnown RBP14.19□□□□□ -0.14
HDAC6-230ENST00000488543 RESTQ13127 1097 aa14.19□□□□□ -0.14
HDAC6-230ENST00000488543 SLF2Q8IX21 1173 aa14.19□□□□□ -0.14
HDAC6-230ENST00000488543 FAM184AQ8NB25 1140 aa14.19□□□□□ -0.14
HDAC6-230ENST00000488543 TEKT1Q969V4 418 aa14.19□□□□□ -0.14
HDAC6-230ENST00000488543 PDLIM2Q96JY6 352 aa14.19□□□□□ -0.14
HDAC6-230ENST00000488543 MTA3Q9BTC8 594 aa14.19□□□□□ -0.14
HDAC6-230ENST00000488543 NID2Q14112 1375 aa14.18□□□□□ -0.14
HDAC6-230ENST00000488543 VIL1P09327 827 aaKnown RBP14.18□□□□□ -0.14
HDAC6-230ENST00000488543 PICALMQ13492 652 aa14.18□□□□□ -0.14
HDAC6-230ENST00000488543 JDP2Q8WYK2 163 aa14.18□□□□□ -0.14
HDAC6-230ENST00000488543 USP40Q9NVE5 1235 aa14.18□□□□□ -0.14
HDAC6-230ENST00000488543 ADAMTSL1Q8N6G6 1762 aa14.18□□□□□ -0.14
HDAC6-230ENST00000488543 PLCD1P51178 756 aa14.18□□□□□ -0.14
HDAC6-230ENST00000488543 CDC42EP5Q6NZY7 148 aa14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms