RNA–Protein interactions for RNA: ENST00000488376.2

SYNE1-226, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 414 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-226ENST00000488376 HDAC1Q13547 482 aaPredicted RBP16.87■□□□□ 0.29
SYNE1-226ENST00000488376 MOGSQ13724 837 aa16.87■□□□□ 0.29
SYNE1-226ENST00000488376 LCORLQ8N3X6 602 aa16.87■□□□□ 0.29
SYNE1-226ENST00000488376 CFHR5Q9BXR6 569 aa16.87■□□□□ 0.29
SYNE1-226ENST00000488376 FOCADQ5VW36 1801 aa16.86■□□□□ 0.29
SYNE1-226ENST00000488376 BTBD19C9JJ37 291 aa16.86■□□□□ 0.29
SYNE1-226ENST00000488376 IGHDP01880 384 aa16.86■□□□□ 0.29
SYNE1-226ENST00000488376 ADD2P35612 726 aa16.86■□□□□ 0.29
SYNE1-226ENST00000488376 CAP1Q01518 475 aa16.86■□□□□ 0.29
SYNE1-226ENST00000488376 SNAPC2Q13487 334 aa16.86■□□□□ 0.29
SYNE1-226ENST00000488376 MCOLN1Q9GZU1 580 aa16.86■□□□□ 0.29
SYNE1-226ENST00000488376 ARMT1Q9H993 441 aa16.86■□□□□ 0.29
SYNE1-226ENST00000488376 KCNH4Q9UQ05 1017 aa16.86■□□□□ 0.29
SYNE1-226ENST00000488376 ZHX2Q9Y6X8 837 aa16.86■□□□□ 0.29
SYNE1-226ENST00000488376 PRKAB2O43741 272 aa16.85■□□□□ 0.29
SYNE1-226ENST00000488376 CTNND1O60716 968 aaKnown RBP16.85■□□□□ 0.29
SYNE1-226ENST00000488376 ALDH1A1P00352 501 aa16.85■□□□□ 0.29
SYNE1-226ENST00000488376 CETPP11597 493 aa16.85■□□□□ 0.29
SYNE1-226ENST00000488376 USP5P45974 858 aa16.85■□□□□ 0.29
SYNE1-226ENST00000488376 DGKZQ13574 1117 aa16.85■□□□□ 0.29
SYNE1-226ENST00000488376 ANKRD45Q5TZF3 282 aa16.85■□□□□ 0.29
SYNE1-226ENST00000488376 PI4K2BQ8TCG2 481 aa16.85■□□□□ 0.29
SYNE1-226ENST00000488376 SDR42E1Q8WUS8 393 aa16.85■□□□□ 0.29
SYNE1-226ENST00000488376 PICK1Q9NRD5 415 aa16.85■□□□□ 0.29
SYNE1-226ENST00000488376 PI4KBQ9UBF8 816 aa16.85■□□□□ 0.29
SYNE1-226ENST00000488376 SALL3Q9BXA9 1300 aa16.85■□□□□ 0.29
SYNE1-226ENST00000488376 MBD4O95243 580 aa16.84■□□□□ 0.29
SYNE1-226ENST00000488376 METTL16Q86W50 562 aaKnown RBP16.84■□□□□ 0.29
SYNE1-226ENST00000488376 ABHD8Q96I13 439 aa16.84■□□□□ 0.29
SYNE1-226ENST00000488376 DHX36Q9H2U1 1008 aaKnown RBP16.84■□□□□ 0.29
SYNE1-226ENST00000488376 AFG3L2Q9Y4W6 797 aa16.84■□□□□ 0.29
SYNE1-226ENST00000488376 DDX60LQ5H9U9 1706 aaKnown RBP16.84■□□□□ 0.29
SYNE1-226ENST00000488376 SMIM22K7EJ46 135 aa16.83■□□□□ 0.28
SYNE1-226ENST00000488376 CAP2P40123 477 aa16.83■□□□□ 0.28
SYNE1-226ENST00000488376 PLCD1P51178 756 aa16.83■□□□□ 0.28
SYNE1-226ENST00000488376 DOCK1Q14185 1865 aa16.83■□□□□ 0.28
SYNE1-226ENST00000488376 TAF1CQ15572 869 aaPredicted RBP16.83■□□□□ 0.28
SYNE1-226ENST00000488376 PUS7LQ9H0K6 701 aaKnown RBP16.83■□□□□ 0.28
SYNE1-226ENST00000488376 HERC5Q9UII4 1024 aaKnown RBP16.83■□□□□ 0.28
SYNE1-226ENST00000488376 TRIM75PA6NK02 468 aa16.82■□□□□ 0.28
SYNE1-226ENST00000488376 FKTNO75072 461 aa16.82■□□□□ 0.28
SYNE1-226ENST00000488376 GDF11O95390 407 aa16.82■□□□□ 0.28
SYNE1-226ENST00000488376 CYP2D6P10635 497 aa16.82■□□□□ 0.28
SYNE1-226ENST00000488376 MX1P20591 662 aa16.82■□□□□ 0.28
SYNE1-226ENST00000488376 NOM1Q5C9Z4 860 aaKnown RBP16.82■□□□□ 0.28
SYNE1-226ENST00000488376 OTUD7BQ6GQQ9 843 aa16.82■□□□□ 0.28
SYNE1-226ENST00000488376 GPAT2Q6NUI2 795 aa16.82■□□□□ 0.28
SYNE1-226ENST00000488376 TMED8Q6PL24 325 aaPredicted RBP16.82■□□□□ 0.28
SYNE1-226ENST00000488376 CRACR2BQ8N4Y2 399 aaPredicted RBP16.82■□□□□ 0.28
SYNE1-226ENST00000488376 GPATCH3Q96I76 525 aa16.82■□□□□ 0.28
SYNE1-226ENST00000488376 CRNKL1Q9BZJ0 848 aaKnown RBP16.82■□□□□ 0.28
SYNE1-226ENST00000488376 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.82■□□□□ 0.28
SYNE1-226ENST00000488376 TTC41PQ6P2S7 1318 aa16.81■□□□□ 0.28
SYNE1-226ENST00000488376 A0A0G2JLL6 359 aaPredicted RBP16.81■□□□□ 0.28
SYNE1-226ENST00000488376 UBE3CQ15386 1083 aa16.81■□□□□ 0.28
SYNE1-226ENST00000488376 PRRT2Q7Z6L0 340 aaPredicted RBP16.81■□□□□ 0.28
SYNE1-226ENST00000488376 CERS3Q8IU89 383 aa16.81■□□□□ 0.28
SYNE1-226ENST00000488376 KBTBD3Q8NAB2 608 aa16.81■□□□□ 0.28
SYNE1-226ENST00000488376 GCC1Q96CN9 775 aa16.81■□□□□ 0.28
SYNE1-226ENST00000488376 DCP1AQ9NPI6 582 aaPredicted RBP16.81■□□□□ 0.28
SYNE1-226ENST00000488376 PHIPQ8WWQ0 1821 aa16.81■□□□□ 0.28
SYNE1-226ENST00000488376 PDHXO00330 501 aa16.8■□□□□ 0.28
SYNE1-226ENST00000488376 CXCL11O14625 94 aa16.8■□□□□ 0.28
SYNE1-226ENST00000488376 HLA-DOAP06340 250 aa16.8■□□□□ 0.28
SYNE1-226ENST00000488376 B4GALNT3Q6L9W6 998 aa16.8■□□□□ 0.28
SYNE1-226ENST00000488376 CTU1Q7Z7A3 348 aaKnown RBP16.8■□□□□ 0.28
SYNE1-226ENST00000488376 FOXP4Q8IVH2 680 aaPredicted RBP16.8■□□□□ 0.28
SYNE1-226ENST00000488376 SMC5Q8IY18 1101 aa16.8■□□□□ 0.28
SYNE1-226ENST00000488376 CD99L2Q8TCZ2 262 aa16.8■□□□□ 0.28
SYNE1-226ENST00000488376 LNPKQ9C0E8 428 aa16.8■□□□□ 0.28
SYNE1-226ENST00000488376 CYP2D7A0A087X1C5 515 aa16.79■□□□□ 0.28
SYNE1-226ENST00000488376 SPP2Q13103 211 aa16.79■□□□□ 0.28
SYNE1-226ENST00000488376 AAMPQ13685 434 aa16.79■□□□□ 0.28
SYNE1-226ENST00000488376 GADL1Q6ZQY3 521 aa16.79■□□□□ 0.28
SYNE1-226ENST00000488376 ANKRD23Q86SG2 305 aa16.79■□□□□ 0.28
SYNE1-226ENST00000488376 OSBP2Q969R2 916 aa16.79■□□□□ 0.28
SYNE1-226ENST00000488376 MCM9Q9NXL9 1143 aa16.79■□□□□ 0.28
SYNE1-226ENST00000488376 SERPINB13Q9UIV8 391 aa16.79■□□□□ 0.28
SYNE1-226ENST00000488376 NAV1Q8NEY1 1877 aa16.79■□□□□ 0.28
SYNE1-226ENST00000488376 ADGRA2Q96PE1 1338 aa16.78■□□□□ 0.28
SYNE1-226ENST00000488376 M0R2C6 588 aa16.78■□□□□ 0.28
SYNE1-226ENST00000488376 GLRX3O76003 335 aaKnown RBP16.78■□□□□ 0.28
SYNE1-226ENST00000488376 CYP2C8P10632 490 aa16.78■□□□□ 0.28
SYNE1-226ENST00000488376 SHMT1P34896 483 aa16.78■□□□□ 0.28
SYNE1-226ENST00000488376 TREML2Q5T2D2 321 aa16.78■□□□□ 0.28
SYNE1-226ENST00000488376 SLC44A5Q8NCS7 719 aa16.78■□□□□ 0.28
SYNE1-226ENST00000488376 DYNLL2Q96FJ2 89 aa16.78■□□□□ 0.28
SYNE1-226ENST00000488376 TRIM34Q9BYJ4 488 aa16.78■□□□□ 0.28
SYNE1-226ENST00000488376 EHD4Q9H223 541 aa16.78■□□□□ 0.28
SYNE1-226ENST00000488376 RWDD1Q9H446 243 aaPredicted RBP16.78■□□□□ 0.28
SYNE1-226ENST00000488376 ZFYVE28Q9HCC9 887 aa16.78■□□□□ 0.28
SYNE1-226ENST00000488376 ZBTB21Q9ULJ3 1066 aa16.78■□□□□ 0.28
SYNE1-226ENST00000488376 MYH1P12882 1939 aa16.78■□□□□ 0.28
SYNE1-226ENST00000488376 ATAD5Q96QE3 1844 aa16.77■□□□□ 0.28
SYNE1-226ENST00000488376 USP17L5A8MUK1 530 aa16.77■□□□□ 0.28
SYNE1-226ENST00000488376 RNF113AO15541 343 aaKnown RBP16.77■□□□□ 0.28
SYNE1-226ENST00000488376 TLR2O60603 784 aa16.77■□□□□ 0.28
SYNE1-226ENST00000488376 ECM2O94769 699 aaPredicted RBP16.77■□□□□ 0.28
SYNE1-226ENST00000488376 GH2P01242 217 aa16.77■□□□□ 0.28
SYNE1-226ENST00000488376 POLR3DP05423 398 aaPredicted RBP16.77■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms