RNA–Protein interactions for RNA: ENST00000486235.5

TMEM39A-209, Transcript of transmembrane protein 39A, humanhuman

TSL 3

Gene TMEM39A, Length 885 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-209ENST00000486235 POLR3GLQ9BT43 218 aa8.85□□□□□ -0.99
TMEM39A-209ENST00000486235 KDM6AO15550 1401 aaPredicted RBP8.84□□□□□ -0.99
TMEM39A-209ENST00000486235 RAD21O60216 631 aa8.84□□□□□ -0.99
TMEM39A-209ENST00000486235 LILRB5O75023 590 aa8.84□□□□□ -0.99
TMEM39A-209ENST00000486235 FSTL1Q12841 308 aa8.84□□□□□ -0.99
TMEM39A-209ENST00000486235 ZNF530Q6P9A1 599 aaPredicted RBP8.84□□□□□ -0.99
TMEM39A-209ENST00000486235 JMYQ8N9B5 988 aa8.84□□□□□ -0.99
TMEM39A-209ENST00000486235 NUDT8Q8WV74 236 aa8.84□□□□□ -0.99
TMEM39A-209ENST00000486235 UBE2OQ9C0C9 1292 aaKnown RBP8.84□□□□□ -0.99
TMEM39A-209ENST00000486235 MKRN1Q9UHC7 482 aaKnown RBP8.84□□□□□ -0.99
TMEM39A-209ENST00000486235 ANKRD26Q9UPS8 1709 aa8.83□□□□□ -1
TMEM39A-209ENST00000486235 HSP90AB1P08238 724 aaKnown RBP8.83□□□□□ -1
TMEM39A-209ENST00000486235 ZEB1P37275 1124 aaPredicted RBP8.83□□□□□ -1
TMEM39A-209ENST00000486235 CRKLP46109 303 aaKnown RBP8.83□□□□□ -1
TMEM39A-209ENST00000486235 PLEKHO1Q53GL0 409 aaPredicted RBP8.83□□□□□ -1
TMEM39A-209ENST00000486235 PRSS36Q5K4E3 855 aa8.83□□□□□ -1
TMEM39A-209ENST00000486235 UCN2Q96RP3 112 aa8.83□□□□□ -1
TMEM39A-209ENST00000486235 BRCA1P38398 1863 aaKnown RBP8.83□□□□□ -1
TMEM39A-209ENST00000486235 USP42Q9H9J4 1324 aaKnown RBP8.82□□□□□ -1
TMEM39A-209ENST00000486235 MTHFSP49914 203 aa8.82□□□□□ -1
TMEM39A-209ENST00000486235 PLEKHM2Q8IWE5 1019 aa8.82□□□□□ -1
TMEM39A-209ENST00000486235 SMC1BQ8NDV3 1235 aa8.82□□□□□ -1
TMEM39A-209ENST00000486235 JPH1Q9HDC5 661 aaPredicted RBP8.82□□□□□ -1
TMEM39A-209ENST00000486235 MYH14Q7Z406 1995 aaKnown RBP8.82□□□□□ -1
TMEM39A-209ENST00000486235 COL5A3P25940 1745 aaPredicted RBP8.82□□□□□ -1
TMEM39A-209ENST00000486235 PALM3A6NDB9 673 aaPredicted RBP8.81□□□□□ -1
TMEM39A-209ENST00000486235 POLRMTO00411 1230 aaKnown RBP8.81□□□□□ -1
TMEM39A-209ENST00000486235 C21orf2O43822 256 aa8.81□□□□□ -1
TMEM39A-209ENST00000486235 SELPP16109 830 aa8.81□□□□□ -1
TMEM39A-209ENST00000486235 HIRAP54198 1017 aaPredicted RBP8.81□□□□□ -1
TMEM39A-209ENST00000486235 SHISA2Q6UWI4 295 aa8.81□□□□□ -1
TMEM39A-209ENST00000486235 BTLAQ7Z6A9 289 aa8.81□□□□□ -1
TMEM39A-209ENST00000486235 AEBP1Q8IUX7 1158 aa8.81□□□□□ -1
TMEM39A-209ENST00000486235 ALDH16A1Q8IZ83 802 aa8.81□□□□□ -1
TMEM39A-209ENST00000486235 SLC6A14Q9UN76 642 aa8.81□□□□□ -1
TMEM39A-209ENST00000486235 ARFGEF1Q9Y6D6 1849 aa8.81□□□□□ -1
TMEM39A-209ENST00000486235 A0A0A0MRY4 1105 aa8.8□□□□□ -1
TMEM39A-209ENST00000486235 ATP9BO43861 1147 aa8.8□□□□□ -1
TMEM39A-209ENST00000486235 LGR5O75473 907 aa8.8□□□□□ -1
TMEM39A-209ENST00000486235 HSPA1AP0DMV8 641 aaKnown RBP8.8□□□□□ -1
TMEM39A-209ENST00000486235 HSPA1BP0DMV9 641 aaKnown RBP8.8□□□□□ -1
TMEM39A-209ENST00000486235 AMOTQ4VCS5 1084 aa8.8□□□□□ -1
TMEM39A-209ENST00000486235 C1orf141Q5JVX7 400 aa8.8□□□□□ -1
TMEM39A-209ENST00000486235 USPL1Q5W0Q7 1092 aa8.8□□□□□ -1
TMEM39A-209ENST00000486235 DNAJC10Q8IXB1 793 aa8.8□□□□□ -1
TMEM39A-209ENST00000486235 LARGE2Q8N3Y3 721 aa8.8□□□□□ -1
TMEM39A-209ENST00000486235 RBM19Q9Y4C8 960 aaKnown RBP8.8□□□□□ -1
TMEM39A-209ENST00000486235 ZNF831Q5JPB2 1677 aa8.79□□□□□ -1
TMEM39A-209ENST00000486235 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.79□□□□□ -1
TMEM39A-209ENST00000486235 C9orf172C9J069 976 aa8.79□□□□□ -1
TMEM39A-209ENST00000486235 TM4SF1P30408 202 aa8.79□□□□□ -1
TMEM39A-209ENST00000486235 PRELPP51888 382 aa8.79□□□□□ -1
TMEM39A-209ENST00000486235 MBTPS1Q14703 1052 aa8.79□□□□□ -1
TMEM39A-209ENST00000486235 INTS5Q6P9B9 1019 aaKnown RBP8.79□□□□□ -1
TMEM39A-209ENST00000486235 GAS2L2Q8NHY3 880 aa8.79□□□□□ -1
TMEM39A-209ENST00000486235 SCG3Q8WXD2 468 aaKnown RBP8.79□□□□□ -1
TMEM39A-209ENST00000486235 KRTAP9-2Q9BYQ4 174 aa8.79□□□□□ -1
TMEM39A-209ENST00000486235 VEGFAP15692 232 aaPredicted RBP8.78□□□□□ -1
TMEM39A-209ENST00000486235 LMNB1P20700 586 aa8.78□□□□□ -1
TMEM39A-209ENST00000486235 ADGRE1Q14246 886 aa8.78□□□□□ -1
TMEM39A-209ENST00000486235 NFIXQ14938 502 aa8.78□□□□□ -1
TMEM39A-209ENST00000486235 ARTNQ5T4W7 220 aa8.78□□□□□ -1
TMEM39A-209ENST00000486235 SULT6B1Q6IMI4 303 aa8.78□□□□□ -1
TMEM39A-209ENST00000486235 DMRTC2Q8IXT2 367 aaPredicted RBP8.78□□□□□ -1
TMEM39A-209ENST00000486235 ZFP64Q9NPA5 681 aa8.78□□□□□ -1
TMEM39A-209ENST00000486235 DNAJB12Q9NXW2 375 aaKnown RBP8.78□□□□□ -1
TMEM39A-209ENST00000486235 TNRC6CQ9HCJ0 1690 aaKnown RBP8.78□□□□□ -1
TMEM39A-209ENST00000486235 SOS1Q07889 1333 aaPredicted RBP8.78□□□□□ -1
TMEM39A-209ENST00000486235 TJP1Q07157 1748 aa8.77□□□□□ -1
TMEM39A-209ENST00000486235 GLTPD2A6NH11 291 aa8.77□□□□□ -1.01
TMEM39A-209ENST00000486235 M0R2N6 131 aa8.77□□□□□ -1.01
TMEM39A-209ENST00000486235 ELNP15502 786 aa8.77□□□□□ -1.01
TMEM39A-209ENST00000486235 RAC1P63000 192 aa8.77□□□□□ -1.01
TMEM39A-209ENST00000486235 SLC39A6Q13433 755 aa8.77□□□□□ -1.01
TMEM39A-209ENST00000486235 PSAPL1Q6NUJ1 521 aa8.77□□□□□ -1.01
TMEM39A-209ENST00000486235 C2CD5Q86YS7 1000 aa8.77□□□□□ -1.01
TMEM39A-209ENST00000486235 PNMA5Q96PV4 448 aa8.77□□□□□ -1.01
TMEM39A-209ENST00000486235 SBF1O95248 1867 aa8.77□□□□□ -1.01
TMEM39A-209ENST00000486235 CARMIL3Q8ND23 1372 aa8.76□□□□□ -1.01
TMEM39A-209ENST00000486235 NFKBIEO00221 500 aa8.76□□□□□ -1.01
TMEM39A-209ENST00000486235 DKK1O94907 266 aa8.76□□□□□ -1.01
TMEM39A-209ENST00000486235 SERPINB2P05120 415 aa8.76□□□□□ -1.01
TMEM39A-209ENST00000486235 NFKB1P19838 968 aa8.76□□□□□ -1.01
TMEM39A-209ENST00000486235 RASA1P20936 1047 aa8.76□□□□□ -1.01
TMEM39A-209ENST00000486235 AFF1P51825 1210 aaKnown RBP8.76□□□□□ -1.01
TMEM39A-209ENST00000486235 SIX5Q8N196 739 aa8.76□□□□□ -1.01
TMEM39A-209ENST00000486235 TTLL6Q8N841 843 aa8.76□□□□□ -1.01
TMEM39A-209ENST00000486235 C2orf49Q9BVC5 232 aaPredicted RBP8.76□□□□□ -1.01
TMEM39A-209ENST00000486235 GSX2Q9BZM3 304 aa8.76□□□□□ -1.01
TMEM39A-209ENST00000486235 ZMYND15Q9H091 742 aa8.76□□□□□ -1.01
TMEM39A-209ENST00000486235 PANK3Q9H999 370 aa8.76□□□□□ -1.01
TMEM39A-209ENST00000486235 NAGPAQ9UK23 515 aa8.76□□□□□ -1.01
TMEM39A-209ENST00000486235 ZBTB1Q9Y2K1 713 aa8.76□□□□□ -1.01
TMEM39A-209ENST00000486235 ADAMTS7Q9UKP4 1686 aa8.75□□□□□ -1.01
TMEM39A-209ENST00000486235 COL15A1P39059 1388 aa8.75□□□□□ -1.01
TMEM39A-209ENST00000486235 KRTAP9-6A0A140TA67 174 aa8.75□□□□□ -1.01
TMEM39A-209ENST00000486235 CYP19A1P11511 503 aaPredicted RBP8.75□□□□□ -1.01
TMEM39A-209ENST00000486235 TRIM26Q12899 539 aaPredicted RBP8.75□□□□□ -1.01
TMEM39A-209ENST00000486235 MORC1Q86VD1 984 aa8.75□□□□□ -1.01
TMEM39A-209ENST00000486235 TXNRD3Q86VQ6 643 aa8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms