RNA–Protein interactions for RNA: ENST00000485550.5

HMGN1-215, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 5

Gene HMGN1, Length 745 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-215ENST00000485550 GDF15Q99988 308 aa13.1□□□□□ -0.31
HMGN1-215ENST00000485550 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.1□□□□□ -0.31
HMGN1-215ENST00000485550 TNPO2O14787 897 aaKnown RBP13.09□□□□□ -0.31
HMGN1-215ENST00000485550 SYN1P17600 705 aa13.09□□□□□ -0.31
HMGN1-215ENST00000485550 ATF7IPQ6VMQ6 1270 aa13.09□□□□□ -0.31
HMGN1-215ENST00000485550 MIER1Q8N108 512 aa13.09□□□□□ -0.31
HMGN1-215ENST00000485550 FAM151AQ8WW52 585 aa13.09□□□□□ -0.31
HMGN1-215ENST00000485550 NEUROD6Q96NK8 337 aa13.09□□□□□ -0.31
HMGN1-215ENST00000485550 ABCF2Q9UG63 623 aa13.09□□□□□ -0.31
HMGN1-215ENST00000485550 ZNF112Q9UJU3 913 aa13.09□□□□□ -0.31
HMGN1-215ENST00000485550 ATAD5Q96QE3 1844 aa13.09□□□□□ -0.31
HMGN1-215ENST00000485550 A0A1B0GUL7 405 aa13.08□□□□□ -0.32
HMGN1-215ENST00000485550 RASGRF1Q13972 1273 aa13.08□□□□□ -0.32
HMGN1-215ENST00000485550 NOL9Q5SY16 702 aaKnown RBP13.08□□□□□ -0.32
HMGN1-215ENST00000485550 NECAB2Q7Z6G3 386 aa13.08□□□□□ -0.32
HMGN1-215ENST00000485550 ZFPM1Q8IX07 1006 aa13.08□□□□□ -0.32
HMGN1-215ENST00000485550 XAGE2Q96GT9 111 aa13.08□□□□□ -0.32
HMGN1-215ENST00000485550 COL25A1Q9BXS0 654 aaPredicted RBP13.08□□□□□ -0.32
HMGN1-215ENST00000485550 PAK6Q9NQU5 681 aaPredicted RBP13.08□□□□□ -0.32
HMGN1-215ENST00000485550 FAM198AQ9UFP1 575 aa13.08□□□□□ -0.32
HMGN1-215ENST00000485550 STXBP5LQ9Y2K9 1186 aa13.08□□□□□ -0.32
HMGN1-215ENST00000485550 PLXNB2O15031 1838 aa13.08□□□□□ -0.32
HMGN1-215ENST00000485550 PNMA6EA0A0J9YXQ4 647 aa13.07□□□□□ -0.32
HMGN1-215ENST00000485550 SEMA3EO15041 775 aa13.07□□□□□ -0.32
HMGN1-215ENST00000485550 GNAI2P04899 355 aa13.07□□□□□ -0.32
HMGN1-215ENST00000485550 BMP8BP34820 402 aa13.07□□□□□ -0.32
HMGN1-215ENST00000485550 HNRNPUQ00839 825 aaKnown RBP eCLIP13.07□□□□□ -0.32
HMGN1-215ENST00000485550 GPR153Q6NV75 609 aa13.07□□□□□ -0.32
HMGN1-215ENST00000485550 GADL1Q6ZQY3 521 aa13.07□□□□□ -0.32
HMGN1-215ENST00000485550 PXYLP1Q8TE99 480 aa13.07□□□□□ -0.32
HMGN1-215ENST00000485550 MTMR10Q9NXD2 777 aa13.07□□□□□ -0.32
HMGN1-215ENST00000485550 AKAP2Q9Y2D5 859 aa13.07□□□□□ -0.32
HMGN1-215ENST00000485550 SALL1Q9NSC2 1324 aa13.07□□□□□ -0.32
HMGN1-215ENST00000485550 CXCL11O14625 94 aa13.06□□□□□ -0.32
HMGN1-215ENST00000485550 G3BP1Q13283 466 aaKnown RBP eCLIP13.06□□□□□ -0.32
HMGN1-215ENST00000485550 MTX1Q13505 466 aa13.06□□□□□ -0.32
HMGN1-215ENST00000485550 GORABQ5T7V8 394 aa13.06□□□□□ -0.32
HMGN1-215ENST00000485550 DZIP1Q86YF9 867 aaKnown RBP13.06□□□□□ -0.32
HMGN1-215ENST00000485550 TMEM57Q8N5G2 664 aa13.06□□□□□ -0.32
HMGN1-215ENST00000485550 CRISPLD2Q9H0B8 497 aa13.06□□□□□ -0.32
HMGN1-215ENST00000485550 A0A0G2JLL6 359 aaPredicted RBP13.05□□□□□ -0.32
HMGN1-215ENST00000485550 SLURP2P0DP57 97 aa13.05□□□□□ -0.32
HMGN1-215ENST00000485550 MAGEA10P43363 369 aaPredicted RBP13.05□□□□□ -0.32
HMGN1-215ENST00000485550 RGS3P49796 1198 aa13.05□□□□□ -0.32
HMGN1-215ENST00000485550 IRF5Q13568 498 aa13.05□□□□□ -0.32
HMGN1-215ENST00000485550 MVPQ14764 893 aaKnown RBP13.05□□□□□ -0.32
HMGN1-215ENST00000485550 LRIT3Q3SXY7 679 aa13.05□□□□□ -0.32
HMGN1-215ENST00000485550 ZKSCAN2Q63HK3 967 aa13.05□□□□□ -0.32
HMGN1-215ENST00000485550 PI16Q6UXB8 463 aa13.05□□□□□ -0.32
HMGN1-215ENST00000485550 PRRT2Q7Z6L0 340 aaPredicted RBP13.05□□□□□ -0.32
HMGN1-215ENST00000485550 ZSCAN29Q8IWY8 852 aaPredicted RBP13.05□□□□□ -0.32
HMGN1-215ENST00000485550 ZGPATQ8N5A5 531 aaKnown RBP13.05□□□□□ -0.32
HMGN1-215ENST00000485550 ANKRD13CQ8N6S4 541 aa13.05□□□□□ -0.32
HMGN1-215ENST00000485550 SMCR8Q8TEV9 937 aaPredicted RBP13.05□□□□□ -0.32
HMGN1-215ENST00000485550 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.05□□□□□ -0.323e-13■■■■□ 21.6
HMGN1-215ENST00000485550 ZHX2Q9Y6X8 837 aa13.05□□□□□ -0.32
HMGN1-215ENST00000485550 PTPRAP18433 802 aa13.04□□□□□ -0.32
HMGN1-215ENST00000485550 BTDP43251 543 aa13.04□□□□□ -0.32
HMGN1-215ENST00000485550 PICALMQ13492 652 aa13.04□□□□□ -0.32
HMGN1-215ENST00000485550 TBC1D9Q6ZT07 1266 aa13.04□□□□□ -0.32
HMGN1-215ENST00000485550 ERICH6Q7L0X2 663 aa13.04□□□□□ -0.32
HMGN1-215ENST00000485550 FASTKD5Q7L8L6 764 aaKnown RBP13.04□□□□□ -0.32
HMGN1-215ENST00000485550 TDHQ8IZJ6 230 aa13.04□□□□□ -0.32
HMGN1-215ENST00000485550 COA7Q96BR5 231 aa13.04□□□□□ -0.32
HMGN1-215ENST00000485550 C1orf115Q9H7X2 142 aa13.04□□□□□ -0.32
HMGN1-215ENST00000485550 HMG20BQ9P0W2 317 aa13.04□□□□□ -0.32
HMGN1-215ENST00000485550 FRMPD3Q5JV73 1810 aa13.04□□□□□ -0.32
HMGN1-215ENST00000485550 LOC285556D6RIA3 1793 aa13.03□□□□□ -0.32
HMGN1-215ENST00000485550 CAPN2P17655 700 aa13.03□□□□□ -0.32
HMGN1-215ENST00000485550 MECOMQ03112 1051 aa13.03□□□□□ -0.32
HMGN1-215ENST00000485550 TRIM32Q13049 653 aa13.03□□□□□ -0.32
HMGN1-215ENST00000485550 DIEXFQ68CQ4 756 aaKnown RBP13.03□□□□□ -0.32
HMGN1-215ENST00000485550 SPTY2D1Q68D10 685 aaPredicted RBP13.03□□□□□ -0.32
HMGN1-215ENST00000485550 SH3BP5LQ7L8J4 393 aa13.03□□□□□ -0.32
HMGN1-215ENST00000485550 SCYL3Q8IZE3 742 aa13.03□□□□□ -0.32
HMGN1-215ENST00000485550 UBE2OQ9C0C9 1292 aaKnown RBP13.03□□□□□ -0.32
HMGN1-215ENST00000485550 DDX4Q9NQI0 724 aaKnown RBP13.03□□□□□ -0.32
HMGN1-215ENST00000485550 PICK1Q9NRD5 415 aa13.03□□□□□ -0.32
HMGN1-215ENST00000485550 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.03□□□□□ -0.32
HMGN1-215ENST00000485550 AFG3L2Q9Y4W6 797 aa13.03□□□□□ -0.32
HMGN1-215ENST00000485550 GAKO14976 1311 aa13.03□□□□□ -0.32
HMGN1-215ENST00000485550 DDTLA6NHG4 134 aaPredicted RBP13.02□□□□□ -0.33
HMGN1-215ENST00000485550 TRIM75PA6NK02 468 aa13.02□□□□□ -0.33
HMGN1-215ENST00000485550 PHF20L1A8MW92 1017 aa13.02□□□□□ -0.33
HMGN1-215ENST00000485550 ENTPD3O75355 529 aa13.02□□□□□ -0.33
HMGN1-215ENST00000485550 CCDC84Q86UT8 332 aaPredicted RBP13.02□□□□□ -0.33
HMGN1-215ENST00000485550 PHF6Q8IWS0 365 aaKnown RBP eCLIP13.02□□□□□ -0.33
HMGN1-215ENST00000485550 SLF2Q8IX21 1173 aa13.02□□□□□ -0.33
HMGN1-215ENST00000485550 ANKLE1Q8NAG6 615 aa13.02□□□□□ -0.33
HMGN1-215ENST00000485550 SPATA5Q8NB90 893 aa13.02□□□□□ -0.33
HMGN1-215ENST00000485550 ZNF384Q8TF68 577 aa13.02□□□□□ -0.33
HMGN1-215ENST00000485550 IDI2Q9BXS1 227 aa13.02□□□□□ -0.33
HMGN1-215ENST00000485550 NBPF3Q9H094 633 aa13.02□□□□□ -0.33
HMGN1-215ENST00000485550 C11orf49Q9H6J7 331 aa13.02□□□□□ -0.33
HMGN1-215ENST00000485550 SNRKQ9NRH2 765 aa13.02□□□□□ -0.33
HMGN1-215ENST00000485550 RAI14Q9P0K7 980 aa13.02□□□□□ -0.33
HMGN1-215ENST00000485550 HMGCRP04035 888 aa13.01□□□□□ -0.33
HMGN1-215ENST00000485550 ATP8B2P98198 1209 aa13.01□□□□□ -0.33
HMGN1-215ENST00000485550 OS9Q13438 667 aaPredicted RBP13.01□□□□□ -0.33
HMGN1-215ENST00000485550 ITPRIPQ8IWB1 547 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms