RNA–Protein interactions for RNA: ENST00000477836.1

SMARCB1-206, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 2

Gene SMARCB1, Length 660 nt, Biotype processed transcript, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-206ENST00000477836 TRMT44Q8IYL2 757 aaKnown RBP12.23□□□□□ -0.45
SMARCB1-206ENST00000477836 SOCS4Q8WXH5 440 aa12.23□□□□□ -0.45
SMARCB1-206ENST00000477836 THEGQ9P2T0 379 aa12.23□□□□□ -0.45
SMARCB1-206ENST00000477836 ADAMTS8Q9UP79 889 aa12.23□□□□□ -0.45
SMARCB1-206ENST00000477836 FRMPD3Q5JV73 1810 aa12.23□□□□□ -0.45
SMARCB1-206ENST00000477836 CTNND1O60716 968 aaKnown RBP12.22□□□□□ -0.45
SMARCB1-206ENST00000477836 PDE3AQ14432 1141 aa12.22□□□□□ -0.45
SMARCB1-206ENST00000477836 CCL14Q16627 93 aa12.22□□□□□ -0.45
SMARCB1-206ENST00000477836 CCDC184Q52MB2 194 aa12.22□□□□□ -0.45
SMARCB1-206ENST00000477836 IL27Q8NEV9 243 aa12.22□□□□□ -0.45
SMARCB1-206ENST00000477836 C1QTNF1Q9BXJ1 281 aa12.22□□□□□ -0.45
SMARCB1-206ENST00000477836 ASCC2Q9H1I8 757 aaPredicted RBP12.22□□□□□ -0.45
SMARCB1-206ENST00000477836 SPINK5Q9NQ38 1064 aaPredicted RBP12.22□□□□□ -0.45
SMARCB1-206ENST00000477836 HCN4Q9Y3Q4 1203 aa12.22□□□□□ -0.45
SMARCB1-206ENST00000477836 PEX10O60683 326 aa12.21□□□□□ -0.45
SMARCB1-206ENST00000477836 RGS3P49796 1198 aa12.21□□□□□ -0.45
SMARCB1-206ENST00000477836 HMGCS2P54868 508 aa12.21□□□□□ -0.45
SMARCB1-206ENST00000477836 MRPS5P82675 430 aaKnown RBP12.21□□□□□ -0.45
SMARCB1-206ENST00000477836 SPP2Q13103 211 aa12.21□□□□□ -0.45
SMARCB1-206ENST00000477836 RNPC3Q96LT9 517 aaKnown RBP12.21□□□□□ -0.45
SMARCB1-206ENST00000477836 MORF4L1Q9UBU8 362 aa12.21□□□□□ -0.45
SMARCB1-206ENST00000477836 CHD9Q3L8U1 2897 aa12.2□□□□□ -0.46
SMARCB1-206ENST00000477836 LOC285556D6RIA3 1793 aa12.2□□□□□ -0.46
SMARCB1-206ENST00000477836 RGS2P41220 211 aa12.2□□□□□ -0.46
SMARCB1-206ENST00000477836 TWISTNBQ3B726 338 aaPredicted RBP12.2□□□□□ -0.46
SMARCB1-206ENST00000477836 METTL24Q5JXM2 366 aa12.2□□□□□ -0.46
SMARCB1-206ENST00000477836 SH3BP5LQ7L8J4 393 aa12.2□□□□□ -0.46
SMARCB1-206ENST00000477836 WDR66Q8TBY9 1149 aa12.2□□□□□ -0.46
SMARCB1-206ENST00000477836 TSR2Q969E8 191 aaKnown RBP12.2□□□□□ -0.46
SMARCB1-206ENST00000477836 ARIH1Q9Y4X5 557 aaPredicted RBP12.2□□□□□ -0.46
SMARCB1-206ENST00000477836 DDTLA6NHG4 134 aaPredicted RBP12.19□□□□□ -0.46
SMARCB1-206ENST00000477836 DNM1LO00429 736 aa12.19□□□□□ -0.46
SMARCB1-206ENST00000477836 APAF1O14727 1248 aa12.19□□□□□ -0.46
SMARCB1-206ENST00000477836 ENTPD3O75355 529 aa12.19□□□□□ -0.46
SMARCB1-206ENST00000477836 DNAJB2P25686 324 aa12.19□□□□□ -0.46
SMARCB1-206ENST00000477836 CNGA1P29973 690 aa12.19□□□□□ -0.46
SMARCB1-206ENST00000477836 MAP3K10Q02779 954 aa12.19□□□□□ -0.46
SMARCB1-206ENST00000477836 LRRC24Q50LG9 513 aa12.19□□□□□ -0.46
SMARCB1-206ENST00000477836 POTEEQ6S8J3 1075 aa12.19□□□□□ -0.46
SMARCB1-206ENST00000477836 CCAR1Q8IX12 1150 aaKnown RBP12.19□□□□□ -0.46
SMARCB1-206ENST00000477836 ZNF280CQ8ND82 737 aa12.19□□□□□ -0.46
SMARCB1-206ENST00000477836 GPRC5AQ8NFJ5 357 aa12.19□□□□□ -0.46
SMARCB1-206ENST00000477836 LPAR1Q92633 364 aa12.19□□□□□ -0.46
SMARCB1-206ENST00000477836 USP6NLQ92738 828 aa12.19□□□□□ -0.46
SMARCB1-206ENST00000477836 YTHDC1Q96MU7 727 aaKnown RBP12.19□□□□□ -0.46
SMARCB1-206ENST00000477836 GAS2L1Q99501 681 aaPredicted RBP12.19□□□□□ -0.46
SMARCB1-206ENST00000477836 ZNF576Q9H609 170 aa12.19□□□□□ -0.46
SMARCB1-206ENST00000477836 DDX20Q9UHI6 824 aaKnown RBP12.19□□□□□ -0.46
SMARCB1-206ENST00000477836 MYH13Q9UKX3 1938 aa12.18□□□□□ -0.46
SMARCB1-206ENST00000477836 GRM8O00222 908 aa12.18□□□□□ -0.46
SMARCB1-206ENST00000477836 PDE8BO95263 885 aa12.18□□□□□ -0.46
SMARCB1-206ENST00000477836 PRDX5P30044 214 aa12.18□□□□□ -0.46
SMARCB1-206ENST00000477836 MAPK4P31152 587 aa12.18□□□□□ -0.46
SMARCB1-206ENST00000477836 IRX3P78415 501 aaPredicted RBP12.18□□□□□ -0.46
SMARCB1-206ENST00000477836 CCDC85BQ15834 202 aaPredicted RBP12.18□□□□□ -0.46
SMARCB1-206ENST00000477836 TRIM60Q495X7 471 aa12.18□□□□□ -0.46
SMARCB1-206ENST00000477836 BEND3Q5T5X7 828 aa12.18□□□□□ -0.46
SMARCB1-206ENST00000477836 SLC39A5Q6ZMH5 540 aa12.18□□□□□ -0.46
SMARCB1-206ENST00000477836 SH3RF1Q7Z6J0 888 aa12.18□□□□□ -0.46
SMARCB1-206ENST00000477836 NECAB3Q96P71 396 aaPredicted RBP12.18□□□□□ -0.46
SMARCB1-206ENST00000477836 APBA2Q99767 749 aa12.18□□□□□ -0.46
SMARCB1-206ENST00000477836 IDI2Q9BXS1 227 aa12.18□□□□□ -0.46
SMARCB1-206ENST00000477836 TXNRD2Q9NNW7 524 aa12.18□□□□□ -0.46
SMARCB1-206ENST00000477836 PDLIM7Q9NR12 457 aa12.18□□□□□ -0.46
SMARCB1-206ENST00000477836 RLFQ13129 1914 aa12.17□□□□□ -0.46
SMARCB1-206ENST00000477836 TRIM43BA6NCK2 446 aa12.17□□□□□ -0.46
SMARCB1-206ENST00000477836 FAM196BA6NMK8 535 aa12.17□□□□□ -0.46
SMARCB1-206ENST00000477836 F6X3S4 739 aa12.17□□□□□ -0.46
SMARCB1-206ENST00000477836 LDHBP07195 334 aaKnown RBP12.17□□□□□ -0.46
SMARCB1-206ENST00000477836 PICALMQ13492 652 aa12.17□□□□□ -0.46
SMARCB1-206ENST00000477836 MORN1Q5T089 497 aa12.17□□□□□ -0.46
SMARCB1-206ENST00000477836 GJC2Q5T442 439 aaPredicted RBP12.17□□□□□ -0.46
SMARCB1-206ENST00000477836 GPR142Q7Z601 462 aa12.17□□□□□ -0.46
SMARCB1-206ENST00000477836 FAM9BQ8IZU0 186 aa12.17□□□□□ -0.46
SMARCB1-206ENST00000477836 TRIM43Q96BQ3 446 aaPredicted RBP12.17□□□□□ -0.46
SMARCB1-206ENST00000477836 TIFAQ96CG3 184 aa12.17□□□□□ -0.46
SMARCB1-206ENST00000477836 P2RX7Q99572 595 aaKnown RBP12.17□□□□□ -0.46
SMARCB1-206ENST00000477836 LRFN3Q9BTN0 628 aa12.17□□□□□ -0.46
SMARCB1-206ENST00000477836 PORCNQ9H237 461 aa12.17□□□□□ -0.46
SMARCB1-206ENST00000477836 CWC22Q9HCG8 908 aaKnown RBP12.17□□□□□ -0.46
SMARCB1-206ENST00000477836 C9orf78Q9NZ63 289 aaPredicted RBP12.17□□□□□ -0.46
SMARCB1-206ENST00000477836 CHD7Q9P2D1 2997 aa12.17□□□□□ -0.46
SMARCB1-206ENST00000477836 NCOR1O75376 2440 aa12.16□□□□□ -0.46
SMARCB1-206ENST00000477836 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.16□□□□□ -0.46
SMARCB1-206ENST00000477836 HSFX3A0A1B0GWH4 333 aaPredicted RBP12.16□□□□□ -0.46
SMARCB1-206ENST00000477836 MSCO60682 206 aa12.16□□□□□ -0.46
SMARCB1-206ENST00000477836 IFIT1P09914 478 aaKnown RBP12.16□□□□□ -0.46
SMARCB1-206ENST00000477836 EPHB4P54760 987 aa12.16□□□□□ -0.46
SMARCB1-206ENST00000477836 HERVK_113P62684 666 aa12.16□□□□□ -0.46
SMARCB1-206ENST00000477836 Q3C1V9 767 aa12.16□□□□□ -0.46
SMARCB1-206ENST00000477836 AKNAD1Q5T1N1 836 aa12.16□□□□□ -0.46
SMARCB1-206ENST00000477836 MFSD14CQ5VZR4 134 aa12.16□□□□□ -0.46
SMARCB1-206ENST00000477836 PLEKHH3Q7Z736 793 aa12.16□□□□□ -0.46
SMARCB1-206ENST00000477836 ALYREFQ86V81 257 aaKnown RBP12.16□□□□□ -0.46
SMARCB1-206ENST00000477836 VGLL2Q8N8G2 317 aa12.16□□□□□ -0.46
SMARCB1-206ENST00000477836 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.16□□□□□ -0.46
SMARCB1-206ENST00000477836 DDX4Q9NQI0 724 aaKnown RBP12.16□□□□□ -0.46
SMARCB1-206ENST00000477836 FLRT1Q9NZU1 646 aa12.16□□□□□ -0.46
SMARCB1-206ENST00000477836 MYCNP04198 464 aaPredicted RBP12.15□□□□□ -0.46
SMARCB1-206ENST00000477836 ERVK-9P63128 1117 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms