RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 ZBTB37Q5TC79 503 aa7.19□□□□□ -1.26
CCDC88A-212ENST00000474059 ARHGAP27Q6ZUM4 889 aa7.19□□□□□ -1.26
CCDC88A-212ENST00000474059 ASB11Q8WXH4 323 aa7.19□□□□□ -1.26
CCDC88A-212ENST00000474059 SEMA3GQ9NS98 782 aa7.19□□□□□ -1.26
CCDC88A-212ENST00000474059 DCDC2CA8MYV0 355 aa7.18□□□□□ -1.26
CCDC88A-212ENST00000474059 PRR33A8MZF0 331 aa7.18□□□□□ -1.26
CCDC88A-212ENST00000474059 KCNMB1Q16558 191 aa7.18□□□□□ -1.26
CCDC88A-212ENST00000474059 LARP7Q4G0J3 582 aaKnown RBP eCLIP7.18□□□□□ -1.26
CCDC88A-212ENST00000474059 C12orf40Q86WS4 652 aa7.18□□□□□ -1.26
CCDC88A-212ENST00000474059 TMC1Q8TDI8 760 aa7.18□□□□□ -1.26
CCDC88A-212ENST00000474059 AKAP2Q9Y2D5 859 aa7.18□□□□□ -1.26
CCDC88A-212ENST00000474059 PKN1Q16512 942 aa7.17□□□□□ -1.26
CCDC88A-212ENST00000474059 PRR23BQ6ZRT6 265 aa7.17□□□□□ -1.26
CCDC88A-212ENST00000474059 SSU72Q9NP77 194 aaKnown RBP7.17□□□□□ -1.26
CCDC88A-212ENST00000474059 GTF2IRD1Q9UHL9 959 aa7.17□□□□□ -1.26
CCDC88A-212ENST00000474059 SLITRK5O94991 958 aa7.16□□□□□ -1.26
CCDC88A-212ENST00000474059 TSPAN15O95858 294 aa7.16□□□□□ -1.26
CCDC88A-212ENST00000474059 CLCN7P51798 805 aa7.16□□□□□ -1.26
CCDC88A-212ENST00000474059 ENOX2Q16206 610 aaKnown RBP7.16□□□□□ -1.26
CCDC88A-212ENST00000474059 KRTAP19-4Q3LI73 84 aa7.16□□□□□ -1.26
CCDC88A-212ENST00000474059 ARMCX6Q7L4S7 300 aa7.16□□□□□ -1.26
CCDC88A-212ENST00000474059 EMILIN2Q9BXX0 1053 aa7.16□□□□□ -1.26
CCDC88A-212ENST00000474059 KRTAP4-5Q9BYR2 181 aa7.16□□□□□ -1.26
CCDC88A-212ENST00000474059 FBRSQ9HAH7 460 aa7.16□□□□□ -1.26
CCDC88A-212ENST00000474059 SOWAHDA6NJG2 315 aa7.15□□□□□ -1.26
CCDC88A-212ENST00000474059 FANCGO15287 622 aa7.15□□□□□ -1.26
CCDC88A-212ENST00000474059 TRIM37O94972 964 aa7.15□□□□□ -1.26
CCDC88A-212ENST00000474059 PTPN11Q06124 597 aaPredicted RBP7.15□□□□□ -1.26
CCDC88A-212ENST00000474059 TPTE2Q6XPS3 522 aa7.15□□□□□ -1.26
CCDC88A-212ENST00000474059 SETDB2Q96T68 719 aa7.15□□□□□ -1.26
CCDC88A-212ENST00000474059 SLC38A3Q99624 504 aa7.15□□□□□ -1.26
CCDC88A-212ENST00000474059 CARS2Q9HA77 564 aaKnown RBP7.15□□□□□ -1.26
CCDC88A-212ENST00000474059 ATP13A1Q9HD20 1204 aa7.15□□□□□ -1.26
CCDC88A-212ENST00000474059 NLRP2Q9NX02 1062 aa7.15□□□□□ -1.26
CCDC88A-212ENST00000474059 PNMA6FA0A0J9YX94 578 aa7.14□□□□□ -1.27
CCDC88A-212ENST00000474059 FBXO24O75426 580 aa7.14□□□□□ -1.27
CCDC88A-212ENST00000474059 SLBPQ14493 270 aaKnown RBP eCLIP7.14□□□□□ -1.27
CCDC88A-212ENST00000474059 INPP5AQ14642 412 aa7.14□□□□□ -1.27
CCDC88A-212ENST00000474059 ACSBG1Q96GR2 724 aa7.14□□□□□ -1.27
CCDC88A-212ENST00000474059 OSBPL7Q9BZF2 842 aa7.14□□□□□ -1.27
CCDC88A-212ENST00000474059 CBX8Q9HC52 389 aa7.14□□□□□ -1.27
CCDC88A-212ENST00000474059 FAM53CQ9NYF3 392 aa7.14□□□□□ -1.27
CCDC88A-212ENST00000474059 LMCD1Q9NZU5 365 aa7.14□□□□□ -1.27
CCDC88A-212ENST00000474059 MAPK8IP1Q9UQF2 711 aa7.14□□□□□ -1.27
CCDC88A-212ENST00000474059 TREHO43280 583 aa7.13□□□□□ -1.27
CCDC88A-212ENST00000474059 GLI1P08151 1106 aa7.13□□□□□ -1.27
CCDC88A-212ENST00000474059 HNRNPUQ00839 825 aaKnown RBP eCLIP7.13□□□□□ -1.27
CCDC88A-212ENST00000474059 C22orf34Q6ZV56 151 aa7.13□□□□□ -1.27
CCDC88A-212ENST00000474059 HSPA12BQ96MM6 686 aa7.13□□□□□ -1.27
CCDC88A-212ENST00000474059 ST14Q9Y5Y6 855 aa7.13□□□□□ -1.27
CCDC88A-212ENST00000474059 LCE5AQ5TCM9 118 aa7.12□□□□□ -1.27
CCDC88A-212ENST00000474059 LRFN4Q6PJG9 635 aa7.12□□□□□ -1.27
CCDC88A-212ENST00000474059 ANKRD24Q8TF21 1146 aa7.12□□□□□ -1.27
CCDC88A-212ENST00000474059 KRTAP17-1Q9BYP8 105 aa7.12□□□□□ -1.27
CCDC88A-212ENST00000474059 KCNK12Q9HB15 430 aa7.12□□□□□ -1.27
CCDC88A-212ENST00000474059 PRDM5Q9NQX1 630 aaPredicted RBP7.12□□□□□ -1.27
CCDC88A-212ENST00000474059 LRIG2O94898 1065 aa7.11□□□□□ -1.27
CCDC88A-212ENST00000474059 CELA3AP09093 270 aa7.11□□□□□ -1.27
CCDC88A-212ENST00000474059 C1QTNF9P0C862 333 aa7.11□□□□□ -1.27
CCDC88A-212ENST00000474059 AFMP43652 599 aa7.11□□□□□ -1.27
CCDC88A-212ENST00000474059 RAP1GAPP47736 663 aa7.11□□□□□ -1.27
CCDC88A-212ENST00000474059 NKG7Q16617 165 aa7.11□□□□□ -1.27
CCDC88A-212ENST00000474059 LLGL2Q6P1M3 1020 aa7.11□□□□□ -1.27
CCDC88A-212ENST00000474059 CYFIP1Q7L576 1253 aa7.11□□□□□ -1.27
CCDC88A-212ENST00000474059 LRRC56Q8IYG6 542 aaPredicted RBP7.11□□□□□ -1.27
CCDC88A-212ENST00000474059 RIN3Q8TB24 985 aa7.11□□□□□ -1.27
CCDC88A-212ENST00000474059 CCER1Q8TC90 406 aaPredicted RBP7.11□□□□□ -1.27
CCDC88A-212ENST00000474059 GAL3ST3Q96A11 431 aa7.11□□□□□ -1.27
CCDC88A-212ENST00000474059 KIRREL1Q96J84 757 aa7.11□□□□□ -1.27
CCDC88A-212ENST00000474059 FOXQ1Q9C009 403 aa7.11□□□□□ -1.27
CCDC88A-212ENST00000474059 PCDHA4Q9UN74 947 aa7.11□□□□□ -1.27
CCDC88A-212ENST00000474059 CAPN6Q9Y6Q1 641 aa7.11□□□□□ -1.27
CCDC88A-212ENST00000474059 GNAT3A8MTJ3 354 aa7.1□□□□□ -1.27
CCDC88A-212ENST00000474059 CDK8P49336 464 aa7.1□□□□□ -1.27
CCDC88A-212ENST00000474059 PDZRN4Q6ZMN7 1036 aaPredicted RBP7.1□□□□□ -1.27
CCDC88A-212ENST00000474059 SYDE1Q6ZW31 735 aaPredicted RBP7.1□□□□□ -1.27
CCDC88A-212ENST00000474059 RETREG2Q8NC44 543 aa7.1□□□□□ -1.27
CCDC88A-212ENST00000474059 KRTAP9-3Q9BYQ3 159 aa7.1□□□□□ -1.27
CCDC88A-212ENST00000474059 PPP4R2Q9NY27 417 aa7.1□□□□□ -1.27
CCDC88A-212ENST00000474059 DCTN4Q9UJW0 460 aa7.1□□□□□ -1.27
CCDC88A-212ENST00000474059 GTF3C3Q9Y5Q9 886 aa7.1□□□□□ -1.27
CCDC88A-212ENST00000474059 GDNFP39905 211 aa7.09□□□□□ -1.27
CCDC88A-212ENST00000474059 PPM1HQ9ULR3 514 aa7.09□□□□□ -1.27
CCDC88A-212ENST00000474059 H3BS24 57 aa7.08□□□□□ -1.28
CCDC88A-212ENST00000474059 GSTT1P30711 240 aa7.08□□□□□ -1.28
CCDC88A-212ENST00000474059 CAP2P40123 477 aa7.08□□□□□ -1.28
CCDC88A-212ENST00000474059 FGD1P98174 961 aa7.08□□□□□ -1.28
CCDC88A-212ENST00000474059 PLPPR2Q96GM1 343 aa7.08□□□□□ -1.28
CCDC88A-212ENST00000474059 TOX2Q96NM4 488 aa7.08□□□□□ -1.28
CCDC88A-212ENST00000474059 CDKAL1Q5VV42 579 aa7.07□□□□□ -1.28
CCDC88A-212ENST00000474059 PCNX4Q63HM2 1172 aa7.07□□□□□ -1.28
CCDC88A-212ENST00000474059 SCARA3Q6AZY7 606 aa7.07□□□□□ -1.28
CCDC88A-212ENST00000474059 MFSD4AQ8N468 514 aa7.07□□□□□ -1.28
CCDC88A-212ENST00000474059 ZNF507Q8TCN5 953 aa7.07□□□□□ -1.28
CCDC88A-212ENST00000474059 PPP1R16BQ96T49 567 aa7.07□□□□□ -1.28
CCDC88A-212ENST00000474059 MIPEPQ99797 713 aa7.07□□□□□ -1.28
CCDC88A-212ENST00000474059 PLCB3Q01970 1234 aa7.06□□□□□ -1.28
CCDC88A-212ENST00000474059 FMR1Q06787 632 aaKnown RBP eCLIP7.06□□□□□ -1.28
CCDC88A-212ENST00000474059 CDC37L1Q7L3B6 337 aa7.06□□□□□ -1.28
CCDC88A-212ENST00000474059 NPAS4Q8IUM7 802 aa7.06□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms