RNA–Protein interactions for RNA: ENST00000474038.1

LIMS1-212, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 679 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-212ENST00000474038 ZSCAN29Q8IWY8 852 aaPredicted RBP18.31■□□□□ 0.52
LIMS1-212ENST00000474038 TGFBRAP1Q8WUH2 860 aa18.31■□□□□ 0.52
LIMS1-212ENST00000474038 DDX24Q9GZR7 859 aaKnown RBP eCLIP18.31■□□□□ 0.52
LIMS1-212ENST00000474038 OSBPL5Q9H0X9 879 aaPredicted RBP18.31■□□□□ 0.52
LIMS1-212ENST00000474038 ATAD5Q96QE3 1844 aa18.3■□□□□ 0.52
LIMS1-212ENST00000474038 GLRX3O76003 335 aaKnown RBP18.3■□□□□ 0.52
LIMS1-212ENST00000474038 NUCB1Q02818 461 aa18.3■□□□□ 0.52
LIMS1-212ENST00000474038 SLFNL1Q499Z3 407 aa18.3■□□□□ 0.52
LIMS1-212ENST00000474038 CHD1LQ86WJ1 897 aa18.3■□□□□ 0.52
LIMS1-212ENST00000474038 CERS3Q8IU89 383 aa18.3■□□□□ 0.52
LIMS1-212ENST00000474038 MAPKAPK5Q8IW41 473 aa18.3■□□□□ 0.52
LIMS1-212ENST00000474038 RIOK1Q9BRS2 568 aaKnown RBP18.3■□□□□ 0.52
LIMS1-212ENST00000474038 STAP2Q9UGK3 403 aa18.3■□□□□ 0.52
LIMS1-212ENST00000474038 DOCK1Q14185 1865 aa18.29■□□□□ 0.52
LIMS1-212ENST00000474038 MAGEB6P1A0A0J9YX57 407 aa18.29■□□□□ 0.52
LIMS1-212ENST00000474038 IRF6O14896 467 aa18.29■□□□□ 0.52
LIMS1-212ENST00000474038 CHGBP05060 677 aa18.29■□□□□ 0.52
LIMS1-212ENST00000474038 SLURP2P0DP57 97 aa18.29■□□□□ 0.52
LIMS1-212ENST00000474038 PDE1AP54750 535 aa18.29■□□□□ 0.52
LIMS1-212ENST00000474038 FAM43AQ8N2R8 423 aa18.29■□□□□ 0.52
LIMS1-212ENST00000474038 KBTBD3Q8NAB2 608 aa18.29■□□□□ 0.52
LIMS1-212ENST00000474038 ZNF112Q9UJU3 913 aa18.29■□□□□ 0.52
LIMS1-212ENST00000474038 DDX60LQ5H9U9 1706 aaKnown RBP18.29■□□□□ 0.52
LIMS1-212ENST00000474038 FLT1P17948 1338 aa18.28■□□□□ 0.52
LIMS1-212ENST00000474038 MAP3K10Q02779 954 aa18.28■□□□□ 0.52
LIMS1-212ENST00000474038 PPIL2Q13356 520 aa18.28■□□□□ 0.52
LIMS1-212ENST00000474038 UBE3CQ15386 1083 aa18.28■□□□□ 0.52
LIMS1-212ENST00000474038 ZSCAN25Q6NSZ9 544 aa18.28■□□□□ 0.52
LIMS1-212ENST00000474038 HPS5Q9UPZ3 1129 aa18.28■□□□□ 0.52
LIMS1-212ENST00000474038 PKN2Q16513 984 aaKnown RBP18.27■□□□□ 0.52
LIMS1-212ENST00000474038 PHIPQ8WWQ0 1821 aa18.26■□□□□ 0.51
LIMS1-212ENST00000474038 MYH8P13535 1937 aa18.26■□□□□ 0.51
LIMS1-212ENST00000474038 PHF20L1A8MW92 1017 aa18.26■□□□□ 0.51
LIMS1-212ENST00000474038 CETPP11597 493 aa18.26■□□□□ 0.51
LIMS1-212ENST00000474038 USP5P45974 858 aa18.26■□□□□ 0.51
LIMS1-212ENST00000474038 PPATQ06203 517 aa18.26■□□□□ 0.51
LIMS1-212ENST00000474038 SNAPC2Q13487 334 aa18.26■□□□□ 0.51
LIMS1-212ENST00000474038 TAF1CQ15572 869 aaPredicted RBP18.26■□□□□ 0.51
LIMS1-212ENST00000474038 NOL9Q5SY16 702 aaKnown RBP18.26■□□□□ 0.51
LIMS1-212ENST00000474038 LCORLQ8N3X6 602 aa18.26■□□□□ 0.51
LIMS1-212ENST00000474038 DHX36Q9H2U1 1008 aaKnown RBP18.26■□□□□ 0.51
LIMS1-212ENST00000474038 BTBD19C9JJ37 291 aa18.25■□□□□ 0.51
LIMS1-212ENST00000474038 TBC1D12O60347 775 aa18.25■□□□□ 0.51
LIMS1-212ENST00000474038 CD99L2Q8TCZ2 262 aa18.25■□□□□ 0.51
LIMS1-212ENST00000474038 CRNKL1Q9BZJ0 848 aaKnown RBP18.25■□□□□ 0.51
LIMS1-212ENST00000474038 ARMT1Q9H993 441 aa18.25■□□□□ 0.51
LIMS1-212ENST00000474038 SAP30BPQ9UHR5 308 aaKnown RBP18.25■□□□□ 0.51
LIMS1-212ENST00000474038 PALD1Q9ULE6 856 aa18.25■□□□□ 0.51
LIMS1-212ENST00000474038 TRIM17Q9Y577 477 aa18.25■□□□□ 0.51
LIMS1-212ENST00000474038 PTPRFP10586 1907 aa18.25■□□□□ 0.51
LIMS1-212ENST00000474038 FAM196BA6NMK8 535 aa18.24■□□□□ 0.51
LIMS1-212ENST00000474038 RNF113AO15541 343 aaKnown RBP18.24■□□□□ 0.51
LIMS1-212ENST00000474038 MBD4O95243 580 aa18.24■□□□□ 0.51
LIMS1-212ENST00000474038 SOX10P56693 466 aa18.24■□□□□ 0.51
LIMS1-212ENST00000474038 CAP1Q01518 475 aa18.24■□□□□ 0.51
LIMS1-212ENST00000474038 FBXO46Q6PJ61 603 aaPredicted RBP18.24■□□□□ 0.51
LIMS1-212ENST00000474038 PLEKHM2Q8IWE5 1019 aa18.24■□□□□ 0.51
LIMS1-212ENST00000474038 PUS7LQ9H0K6 701 aaKnown RBP18.24■□□□□ 0.51
LIMS1-212ENST00000474038 ZFYVE28Q9HCC9 887 aa18.24■□□□□ 0.51
LIMS1-212ENST00000474038 PI4KBQ9UBF8 816 aa18.24■□□□□ 0.51
LIMS1-212ENST00000474038 ZFYP08048 801 aaPredicted RBP18.23■□□□□ 0.51
LIMS1-212ENST00000474038 RGS19P49795 217 aa18.23■□□□□ 0.51
LIMS1-212ENST00000474038 SP3Q02447 781 aa18.23■□□□□ 0.51
LIMS1-212ENST00000474038 OTOP1Q7RTM1 612 aa18.23■□□□□ 0.51
LIMS1-212ENST00000474038 ERO1AQ96HE7 468 aa18.23■□□□□ 0.51
LIMS1-212ENST00000474038 FSD1Q9BTV5 496 aa18.23■□□□□ 0.51
LIMS1-212ENST00000474038 XPO5Q9HAV4 1204 aaKnown RBP eCLIP18.23■□□□□ 0.51
LIMS1-212ENST00000474038 KCNH4Q9UQ05 1017 aa18.23■□□□□ 0.51
LIMS1-212ENST00000474038 HTTP42858 3142 aa18.22■□□□□ 0.51
LIMS1-212ENST00000474038 PRKAB2O43741 272 aa18.22■□□□□ 0.51
LIMS1-212ENST00000474038 SLC4A8Q2Y0W8 1093 aa18.22■□□□□ 0.51
LIMS1-212ENST00000474038 METTL16Q86W50 562 aaKnown RBP18.22■□□□□ 0.51
LIMS1-212ENST00000474038 SCYL3Q8IZE3 742 aa18.22■□□□□ 0.51
LIMS1-212ENST00000474038 SDR42E1Q8WUS8 393 aa18.22■□□□□ 0.51
LIMS1-212ENST00000474038 APPBP2Q92624 585 aa18.22■□□□□ 0.51
LIMS1-212ENST00000474038 OSBPL3Q9H4L5 887 aa18.22■□□□□ 0.51
LIMS1-212ENST00000474038 HERC5Q9UII4 1024 aaKnown RBP18.22■□□□□ 0.51
LIMS1-212ENST00000474038 FOXP4Q8IVH2 680 aaPredicted RBP18.21■□□□□ 0.51
LIMS1-212ENST00000474038 OSBP2Q969R2 916 aa18.21■□□□□ 0.51
LIMS1-212ENST00000474038 EVI5LQ96CN4 794 aa18.21■□□□□ 0.51
LIMS1-212ENST00000474038 DCP1AQ9NPI6 582 aaPredicted RBP18.21■□□□□ 0.51
LIMS1-212ENST00000474038 PICK1Q9NRD5 415 aa18.21■□□□□ 0.51
LIMS1-212ENST00000474038 FRMD4AQ9P2Q2 1039 aaPredicted RBP18.21■□□□□ 0.51
LIMS1-212ENST00000474038 CTNND1O60716 968 aaKnown RBP18.2■□□□□ 0.5
LIMS1-212ENST00000474038 HLA-DOAP06340 250 aa18.2■□□□□ 0.5
LIMS1-212ENST00000474038 PTPRAP18433 802 aa18.2■□□□□ 0.5
LIMS1-212ENST00000474038 PDE4AP27815 886 aa18.2■□□□□ 0.5
LIMS1-212ENST00000474038 MLLT1Q03111 559 aaPredicted RBP18.2■□□□□ 0.5
LIMS1-212ENST00000474038 MOGSQ13724 837 aa18.2■□□□□ 0.5
LIMS1-212ENST00000474038 RRP1BQ14684 758 aaKnown RBP18.2■□□□□ 0.5
LIMS1-212ENST00000474038 LRRFIP1Q32MZ4 808 aaKnown RBP18.2■□□□□ 0.5
LIMS1-212ENST00000474038 DNAJC18Q9H819 358 aa18.2■□□□□ 0.5
LIMS1-212ENST00000474038 EFCC1Q9HA90 598 aa18.2■□□□□ 0.5
LIMS1-212ENST00000474038 ZCCHC17Q9NP64 241 aaKnown RBP18.2■□□□□ 0.5
LIMS1-212ENST00000474038 ZHX2Q9Y6X8 837 aa18.2■□□□□ 0.5
LIMS1-212ENST00000474038 TLR2O60603 784 aa18.19■□□□□ 0.5
LIMS1-212ENST00000474038 ANKRD23Q86SG2 305 aa18.19■□□□□ 0.5
LIMS1-212ENST00000474038 TTC6Q86TZ1 520 aa18.19■□□□□ 0.5
LIMS1-212ENST00000474038 CCDC84Q86UT8 332 aaPredicted RBP18.19■□□□□ 0.5
LIMS1-212ENST00000474038 CRACR2BQ8N4Y2 399 aaPredicted RBP18.19■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms