RNA–Protein interactions for RNA: ENST00000470076.1

COL7A1-208, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 651 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-208ENST00000470076 PLCG2P16885 1265 aa21.44■■□□□ 1.02
COL7A1-208ENST00000470076 FCGRTP55899 365 aa21.44■■□□□ 1.02
COL7A1-208ENST00000470076 DIEXFQ68CQ4 756 aaKnown RBP21.44■■□□□ 1.02
COL7A1-208ENST00000470076 GCC1Q96CN9 775 aa21.44■■□□□ 1.02
COL7A1-208ENST00000470076 TBC1D2Q9BYX2 928 aa21.44■■□□□ 1.02
COL7A1-208ENST00000470076 HERC5Q9UII4 1024 aaKnown RBP21.44■■□□□ 1.02
COL7A1-208ENST00000470076 MYPNQ86TC9 1320 aa21.44■■□□□ 1.02
COL7A1-208ENST00000470076 ATAD5Q96QE3 1844 aa21.43■■□□□ 1.02
COL7A1-208ENST00000470076 RLBP1P12271 317 aa21.43■■□□□ 1.02
COL7A1-208ENST00000470076 GRK4P32298 578 aa21.43■■□□□ 1.02
COL7A1-208ENST00000470076 PPP4CP60510 307 aa21.43■■□□□ 1.02
COL7A1-208ENST00000470076 SH3RF3Q8TEJ3 882 aaPredicted RBP21.43■■□□□ 1.02
COL7A1-208ENST00000470076 DHX36Q9H2U1 1008 aaKnown RBP21.43■■□□□ 1.02
COL7A1-208ENST00000470076 FRMD4AQ9P2Q2 1039 aaPredicted RBP21.43■■□□□ 1.02
COL7A1-208ENST00000470076 AGTPBP1Q9UPW5 1226 aa21.43■■□□□ 1.02
COL7A1-208ENST00000470076 CYP2E1P05181 493 aaPredicted RBP21.42■■□□□ 1.02
COL7A1-208ENST00000470076 CCDC84Q86UT8 332 aaPredicted RBP21.42■■□□□ 1.02
COL7A1-208ENST00000470076 SMCR8Q8TEV9 937 aaPredicted RBP21.42■■□□□ 1.02
COL7A1-208ENST00000470076 AATFQ9NY61 560 aaKnown RBP eCLIP21.42■■□□□ 1.02
COL7A1-208ENST00000470076 PI4KBQ9UBF8 816 aa21.42■■□□□ 1.02
COL7A1-208ENST00000470076 MYO5AQ9Y4I1 1855 aaKnown RBP21.41■■□□□ 1.02
COL7A1-208ENST00000470076 ZBED9Q6R2W3 1325 aa21.41■■□□□ 1.02
COL7A1-208ENST00000470076 CAP2P40123 477 aa21.41■■□□□ 1.02
COL7A1-208ENST00000470076 PROCA1Q8NCQ7 364 aaPredicted RBP21.41■■□□□ 1.02
COL7A1-208ENST00000470076 ZNF280CQ8ND82 737 aa21.41■■□□□ 1.02
COL7A1-208ENST00000470076 DBNLQ9UJU6 430 aaKnown RBP21.41■■□□□ 1.02
COL7A1-208ENST00000470076 PNMA3Q9UL41 463 aa21.41■■□□□ 1.02
COL7A1-208ENST00000470076 CDK5RAP2Q96SN8 1893 aa21.41■■□□□ 1.02
COL7A1-208ENST00000470076 ZAP70P43403 619 aa21.4■■□□□ 1.02
COL7A1-208ENST00000470076 PRKCZQ05513 592 aa21.4■■□□□ 1.02
COL7A1-208ENST00000470076 SPP2Q13103 211 aa21.4■■□□□ 1.02
COL7A1-208ENST00000470076 FOCADQ5VW36 1801 aa21.4■■□□□ 1.02
COL7A1-208ENST00000470076 LOC285556D6RIA3 1793 aa21.39■■□□□ 1.01
COL7A1-208ENST00000470076 USP17L5A8MUK1 530 aa21.39■■□□□ 1.01
COL7A1-208ENST00000470076 MTFR1Q15390 333 aa21.39■■□□□ 1.01
COL7A1-208ENST00000470076 CEP85Q6P2H3 762 aa21.39■■□□□ 1.01
COL7A1-208ENST00000470076 SIPA1L1O43166 1804 aa21.39■■□□□ 1.01
COL7A1-208ENST00000470076 CEP290O15078 2479 aa21.38■■□□□ 1.01
COL7A1-208ENST00000470076 UBXN2AP68543 259 aa21.38■■□□□ 1.01
COL7A1-208ENST00000470076 PABPC4Q13310 644 aaKnown RBP eCLIP21.38■■□□□ 1.01
COL7A1-208ENST00000470076 TREML2Q5T2D2 321 aa21.38■■□□□ 1.01
COL7A1-208ENST00000470076 ADGRA1Q86SQ6 560 aa21.38■■□□□ 1.01
COL7A1-208ENST00000470076 SLAIN1Q8ND83 568 aa21.38■■□□□ 1.01
COL7A1-208ENST00000470076 NKX2-3Q8TAU0 364 aa21.38■■□□□ 1.01
COL7A1-208ENST00000470076 TGFBRAP1Q8WUH2 860 aa21.38■■□□□ 1.01
COL7A1-208ENST00000470076 EAF2Q96CJ1 260 aaPredicted RBP21.38■■□□□ 1.01
COL7A1-208ENST00000470076 CCDC8Q9H0W5 538 aaPredicted RBP21.38■■□□□ 1.01
COL7A1-208ENST00000470076 AS3MTQ9HBK9 375 aa21.38■■□□□ 1.01
COL7A1-208ENST00000470076 TLR7Q9NYK1 1049 aaKnown RBP21.38■■□□□ 1.01
COL7A1-208ENST00000470076 BIN2Q9UBW5 565 aaPredicted RBP21.38■■□□□ 1.01
COL7A1-208ENST00000470076 FLT1P17948 1338 aa21.37■■□□□ 1.01
COL7A1-208ENST00000470076 RRP1BQ14684 758 aaKnown RBP21.37■■□□□ 1.01
COL7A1-208ENST00000470076 ERC1Q8IUD2 1116 aa21.37■■□□□ 1.01
COL7A1-208ENST00000470076 FOXP4Q8IVH2 680 aaPredicted RBP21.37■■□□□ 1.01
COL7A1-208ENST00000470076 MAPKAPK5Q8IW41 473 aa21.37■■□□□ 1.01
COL7A1-208ENST00000470076 PIH1D3Q9NQM4 214 aaKnown RBP21.37■■□□□ 1.01
COL7A1-208ENST00000470076 GABRQQ9UN88 632 aa21.37■■□□□ 1.01
COL7A1-208ENST00000470076 TNPO2O14787 897 aaKnown RBP21.36■■□□□ 1.01
COL7A1-208ENST00000470076 ASNSP08243 561 aa21.36■■□□□ 1.01
COL7A1-208ENST00000470076 HMGCS2P54868 508 aa21.36■■□□□ 1.01
COL7A1-208ENST00000470076 FAM110CQ1W6H9 321 aa21.36■■□□□ 1.01
COL7A1-208ENST00000470076 SH3D19Q5HYK7 790 aa21.36■■□□□ 1.01
COL7A1-208ENST00000470076 METTL16Q86W50 562 aaKnown RBP21.36■■□□□ 1.01
COL7A1-208ENST00000470076 CERS3Q8IU89 383 aa21.36■■□□□ 1.01
COL7A1-208ENST00000470076 GJB1P08034 283 aa21.35■■□□□ 1.01
COL7A1-208ENST00000470076 MS4A1P11836 297 aa21.35■■□□□ 1.01
COL7A1-208ENST00000470076 CCL5P13501 91 aa21.35■■□□□ 1.01
COL7A1-208ENST00000470076 CYP7A1P22680 504 aa21.35■■□□□ 1.01
COL7A1-208ENST00000470076 GCLCP48506 637 aaPredicted RBP21.35■■□□□ 1.01
COL7A1-208ENST00000470076 FLT3LGP49771 235 aa21.35■■□□□ 1.01
COL7A1-208ENST00000470076 CRACR2BQ8N4Y2 399 aaPredicted RBP21.35■■□□□ 1.01
COL7A1-208ENST00000470076 ANKRD13CQ8N6S4 541 aa21.35■■□□□ 1.01
COL7A1-208ENST00000470076 PANK1Q8TE04 598 aa21.35■■□□□ 1.01
COL7A1-208ENST00000470076 SHISA4Q96DD7 197 aa21.35■■□□□ 1.01
COL7A1-208ENST00000470076 WDR18Q9BV38 432 aa21.35■■□□□ 1.01
COL7A1-208ENST00000470076 TRIM34Q9BYJ4 488 aa21.35■■□□□ 1.01
COL7A1-208ENST00000470076 GINM1Q9NU53 330 aa21.35■■□□□ 1.01
COL7A1-208ENST00000470076 DOCK3Q8IZD9 2030 aa21.34■■□□□ 1.01
COL7A1-208ENST00000470076 ADCY3O60266 1144 aa21.34■■□□□ 1.01
COL7A1-208ENST00000470076 IDH1O75874 414 aaKnown RBP21.34■■□□□ 1.01
COL7A1-208ENST00000470076 GJA8P48165 433 aa21.34■■□□□ 1.01
COL7A1-208ENST00000470076 IRF5Q13568 498 aa21.34■■□□□ 1.01
COL7A1-208ENST00000470076 TMED8Q6PL24 325 aaPredicted RBP21.34■■□□□ 1.01
COL7A1-208ENST00000470076 PXYLP1Q8TE99 480 aa21.34■■□□□ 1.01
COL7A1-208ENST00000470076 COA7Q96BR5 231 aa21.34■■□□□ 1.01
COL7A1-208ENST00000470076 RNF208Q9H0X6 261 aa21.34■■□□□ 1.01
COL7A1-208ENST00000470076 PCDH10Q9P2E7 1040 aa21.34■■□□□ 1.01
COL7A1-208ENST00000470076 PALD1Q9ULE6 856 aa21.34■■□□□ 1.01
COL7A1-208ENST00000470076 EXOC6BQ9Y2D4 811 aa21.34■■□□□ 1.01
COL7A1-208ENST00000470076 HLA-DOAP06340 250 aa21.33■■□□□ 1.01
COL7A1-208ENST00000470076 HSP90AB4PQ58FF6 505 aa21.33■■□□□ 1.01
COL7A1-208ENST00000470076 DNAJC18Q9H819 358 aa21.33■■□□□ 1.01
COL7A1-208ENST00000470076 MYH1P12882 1939 aa21.32■■□□□ 1
COL7A1-208ENST00000470076 BACE1P56817 501 aa21.32■■□□□ 1
COL7A1-208ENST00000470076 DYNLL1P63167 89 aaKnown RBP21.32■■□□□ 1
COL7A1-208ENST00000470076 AACSQ86V21 672 aa21.32■■□□□ 1
COL7A1-208ENST00000470076 ASCC2Q9H1I8 757 aaPredicted RBP21.32■■□□□ 1
COL7A1-208ENST00000470076 MAP3K12Q12852 859 aa21.31■■□□□ 1
COL7A1-208ENST00000470076 MTMR2Q13614 643 aa21.31■■□□□ 1
COL7A1-208ENST00000470076 HABP4Q5JVS0 413 aaKnown RBP21.31■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms