RNA–Protein interactions for RNA: ENST00000468421.1

MSX1-202, Transcript of msh homeobox 1, humanhuman

TSL 3

Gene MSX1, Length 509 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-202ENST00000468421 NPM3O75607 178 aaKnown RBP12.71□□□□□ -0.37
MSX1-202ENST00000468421 PRDM1O75626 825 aa12.71□□□□□ -0.37
MSX1-202ENST00000468421 HMGB1P09429 215 aaKnown RBP12.71□□□□□ -0.37
MSX1-202ENST00000468421 MMP14P50281 582 aa12.71□□□□□ -0.37
MSX1-202ENST00000468421 TRDNQ13061 729 aa12.71□□□□□ -0.37
MSX1-202ENST00000468421 KIF4BQ2VIQ3 1234 aa12.71□□□□□ -0.37
MSX1-202ENST00000468421 TBC1D10BQ4KMP7 808 aaPredicted RBP12.71□□□□□ -0.37
MSX1-202ENST00000468421 Q6ZUG5 572 aa12.71□□□□□ -0.37
MSX1-202ENST00000468421 AMOTL1Q8IY63 956 aa12.71□□□□□ -0.37
MSX1-202ENST00000468421 TRPM4Q8TD43 1214 aa12.71□□□□□ -0.37
MSX1-202ENST00000468421 ALDH8A1Q9H2A2 487 aaPredicted RBP12.71□□□□□ -0.37
MSX1-202ENST00000468421 RNF41Q9H4P4 317 aaPredicted RBP12.71□□□□□ -0.37
MSX1-202ENST00000468421 GPHNQ9NQX3 736 aaPredicted RBP12.71□□□□□ -0.37
MSX1-202ENST00000468421 TOMM22Q9NS69 142 aa12.71□□□□□ -0.37
MSX1-202ENST00000468421 GPRC5DQ9NZD1 345 aa12.71□□□□□ -0.37
MSX1-202ENST00000468421 WDR90Q96KV7 1748 aa12.71□□□□□ -0.38
MSX1-202ENST00000468421 POLR2AP24928 1970 aaKnown RBP12.7□□□□□ -0.38
MSX1-202ENST00000468421 ATRNL1Q5VV63 1379 aa12.7□□□□□ -0.38
MSX1-202ENST00000468421 SCN4AP35499 1836 aa12.7□□□□□ -0.38
MSX1-202ENST00000468421 DDTLA6NHG4 134 aaPredicted RBP12.7□□□□□ -0.38
MSX1-202ENST00000468421 PRC1O43663 620 aa12.7□□□□□ -0.38
MSX1-202ENST00000468421 ENTPD3O75355 529 aa12.7□□□□□ -0.38
MSX1-202ENST00000468421 LARGE1O95461 756 aa12.7□□□□□ -0.38
MSX1-202ENST00000468421 SLURP2P0DP57 97 aa12.7□□□□□ -0.38
MSX1-202ENST00000468421 YY1P25490 414 aa12.7□□□□□ -0.38
MSX1-202ENST00000468421 MCM5P33992 734 aa12.7□□□□□ -0.38
MSX1-202ENST00000468421 EPS15P42566 896 aa12.7□□□□□ -0.38
MSX1-202ENST00000468421 GABPAQ06546 454 aa12.7□□□□□ -0.38
MSX1-202ENST00000468421 C16orf86Q6ZW13 317 aa12.7□□□□□ -0.38
MSX1-202ENST00000468421 AGXT2Q9BYV1 514 aa12.7□□□□□ -0.38
MSX1-202ENST00000468421 KRT23Q9C075 422 aa12.7□□□□□ -0.38
MSX1-202ENST00000468421 CNNM2Q9H8M5 875 aa12.7□□□□□ -0.38
MSX1-202ENST00000468421 VEZTQ9HBM0 779 aa12.7□□□□□ -0.38
MSX1-202ENST00000468421 TMOD2Q9NZR1 351 aa12.7□□□□□ -0.38
MSX1-202ENST00000468421 WDR19Q8NEZ3 1342 aa12.69□□□□□ -0.38
MSX1-202ENST00000468421 ORC4O43929 436 aa12.69□□□□□ -0.38
MSX1-202ENST00000468421 SLC3A2P08195 630 aaKnown RBP12.69□□□□□ -0.38
MSX1-202ENST00000468421 CDK8P49336 464 aa12.69□□□□□ -0.38
MSX1-202ENST00000468421 MCM2P49736 904 aa12.69□□□□□ -0.38
MSX1-202ENST00000468421 IL27Q8NEV9 243 aa12.69□□□□□ -0.38
MSX1-202ENST00000468421 TMX3Q96JJ7 454 aa12.69□□□□□ -0.38
MSX1-202ENST00000468421 ZSWIM5Q9P217 1185 aa12.69□□□□□ -0.38
MSX1-202ENST00000468421 TPCN1Q9ULQ1 816 aa12.69□□□□□ -0.38
MSX1-202ENST00000468421 ZC3H4Q9UPT8 1303 aaKnown RBP12.68□□□□□ -0.38
MSX1-202ENST00000468421 ATAD5Q96QE3 1844 aa12.68□□□□□ -0.38
MSX1-202ENST00000468421 H7C1D1 291 aa12.68□□□□□ -0.38
MSX1-202ENST00000468421 SH2B2O14492 632 aaPredicted RBP12.68□□□□□ -0.38
MSX1-202ENST00000468421 MYO1BO43795 1136 aa12.68□□□□□ -0.38
MSX1-202ENST00000468421 HLA-DOAP06340 250 aa12.68□□□□□ -0.38
MSX1-202ENST00000468421 PCP11498 1178 aaKnown RBP12.68□□□□□ -0.38
MSX1-202ENST00000468421 RASA1P20936 1047 aa12.68□□□□□ -0.38
MSX1-202ENST00000468421 PDE4BQ07343 736 aa12.68□□□□□ -0.38
MSX1-202ENST00000468421 FAM47AQ5JRC9 791 aa12.68□□□□□ -0.38
MSX1-202ENST00000468421 FKBP1CQ5VVH2 108 aa12.68□□□□□ -0.38
MSX1-202ENST00000468421 TTC6Q86TZ1 520 aa12.68□□□□□ -0.38
MSX1-202ENST00000468421 CDAN1Q8IWY9 1227 aa12.68□□□□□ -0.38
MSX1-202ENST00000468421 ESR2Q92731 530 aa12.68□□□□□ -0.38
MSX1-202ENST00000468421 BRF1Q92994 677 aa12.68□□□□□ -0.38
MSX1-202ENST00000468421 ZKSCAN3Q9BRR0 538 aa12.68□□□□□ -0.38
MSX1-202ENST00000468421 DNAJC18Q9H819 358 aa12.68□□□□□ -0.38
MSX1-202ENST00000468421 SENP2Q9HC62 589 aa12.68□□□□□ -0.38
MSX1-202ENST00000468421 SCAF8Q9UPN6 1271 aaKnown RBP12.68□□□□□ -0.38
MSX1-202ENST00000468421 MYH4Q9Y623 1939 aa12.67□□□□□ -0.38
MSX1-202ENST00000468421 FAM196BA6NMK8 535 aa12.67□□□□□ -0.38
MSX1-202ENST00000468421 RANBP6O60518 1105 aaKnown RBP12.67□□□□□ -0.38
MSX1-202ENST00000468421 SHMT1P34896 483 aa12.67□□□□□ -0.38
MSX1-202ENST00000468421 HIRAP54198 1017 aaPredicted RBP12.67□□□□□ -0.38
MSX1-202ENST00000468421 APOBRQ0VD83 1088 aa12.67□□□□□ -0.38
MSX1-202ENST00000468421 ST3GAL1Q11201 340 aa12.67□□□□□ -0.38
MSX1-202ENST00000468421 ME3Q16798 604 aa12.67□□□□□ -0.38
MSX1-202ENST00000468421 ZSCAN29Q8IWY8 852 aaPredicted RBP12.67□□□□□ -0.38
MSX1-202ENST00000468421 FBXL16Q8N461 479 aa12.67□□□□□ -0.38
MSX1-202ENST00000468421 SPRYD3Q8NCJ5 442 aa12.67□□□□□ -0.38
MSX1-202ENST00000468421 IGDCC4Q8TDY8 1250 aa12.67□□□□□ -0.38
MSX1-202ENST00000468421 FAM151AQ8WW52 585 aa12.67□□□□□ -0.38
MSX1-202ENST00000468421 L3MBTL3Q96JM7 780 aaPredicted RBP12.67□□□□□ -0.38
MSX1-202ENST00000468421 TMEM39BQ9GZU3 492 aa12.67□□□□□ -0.38
MSX1-202ENST00000468421 EHD4Q9H223 541 aa12.67□□□□□ -0.38
MSX1-202ENST00000468421 DHX36Q9H2U1 1008 aaKnown RBP12.67□□□□□ -0.38
MSX1-202ENST00000468421 PGAP2Q9UHJ9 254 aa12.67□□□□□ -0.38
MSX1-202ENST00000468421 SERPINB13Q9UIV8 391 aa12.67□□□□□ -0.38
MSX1-202ENST00000468421 HACL1Q9UJ83 578 aa12.67□□□□□ -0.38
MSX1-202ENST00000468421 LIMCH1Q9UPQ0 1083 aa12.67□□□□□ -0.38
MSX1-202ENST00000468421 GLTPD2A6NH11 291 aa12.66□□□□□ -0.38
MSX1-202ENST00000468421 LMOD1P29536 600 aaPredicted RBP12.66□□□□□ -0.38
MSX1-202ENST00000468421 FGD1P98174 961 aa12.66□□□□□ -0.38
MSX1-202ENST00000468421 ANKRD1Q15327 319 aa12.66□□□□□ -0.38
MSX1-202ENST00000468421 FAM83AQ86UY5 434 aa12.66□□□□□ -0.38
MSX1-202ENST00000468421 TMEM87BQ96K49 555 aa12.66□□□□□ -0.38
MSX1-202ENST00000468421 LY9Q9HBG7 655 aa12.66□□□□□ -0.38
MSX1-202ENST00000468421 MKNK2Q9HBH9 465 aa12.66□□□□□ -0.38
MSX1-202ENST00000468421 FOXD4L1Q9NU39 408 aa12.66□□□□□ -0.38
MSX1-202ENST00000468421 TNKSO95271 1327 aa12.65□□□□□ -0.38
MSX1-202ENST00000468421 IFIT3O14879 490 aaKnown RBP12.65□□□□□ -0.38
MSX1-202ENST00000468421 NMT2O60551 498 aa12.65□□□□□ -0.38
MSX1-202ENST00000468421 TFAP4Q01664 338 aa12.65□□□□□ -0.38
MSX1-202ENST00000468421 CUL4AQ13619 759 aa12.65□□□□□ -0.38
MSX1-202ENST00000468421 SEC23AQ15436 765 aa12.65□□□□□ -0.38
MSX1-202ENST00000468421 TMEM67Q5HYA8 995 aa12.65□□□□□ -0.38
MSX1-202ENST00000468421 ANGEL2Q5VTE6 544 aaKnown RBP12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms