RNA–Protein interactions for RNA: ENST00000466048.6

USP54-210, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 4,674 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-210ENST00000466048 AGXT2Q9BYV1 514 aa8.8□□□□□ -1
USP54-210ENST00000466048 ZNF408Q9H9D4 720 aa8.8□□□□□ -1
USP54-210ENST00000466048 MTMR6Q9Y217 621 aa8.8□□□□□ -1
USP54-210ENST00000466048 DDX60Q8IY21 1712 aaKnown RBP8.79□□□□□ -1
USP54-210ENST00000466048 MMP14P50281 582 aa8.79□□□□□ -1
USP54-210ENST00000466048 PKP1Q13835 747 aa8.79□□□□□ -1
USP54-210ENST00000466048 PUS7LQ9H0K6 701 aaKnown RBP8.79□□□□□ -1
USP54-210ENST00000466048 INCENPQ9NQS7 918 aa8.79□□□□□ -1
USP54-210ENST00000466048 PICK1Q9NRD5 415 aa8.79□□□□□ -1
USP54-210ENST00000466048 MBD4O95243 580 aa8.79□□□□□ -1
USP54-210ENST00000466048 CBX1P83916 185 aa8.79□□□□□ -1
USP54-210ENST00000466048 ZRSR2Q15696 482 aaKnown RBP8.79□□□□□ -1
USP54-210ENST00000466048 FILIP1Q7Z7B0 1213 aa8.79□□□□□ -1
USP54-210ENST00000466048 USP48Q86UV5 1035 aa8.79□□□□□ -1
USP54-210ENST00000466048 DCPSQ96C86 337 aaKnown RBP8.79□□□□□ -1
USP54-210ENST00000466048 CRAMP1Q96RY5 1269 aa8.79□□□□□ -1
USP54-210ENST00000466048 COA1Q9GZY4 146 aa8.79□□□□□ -1
USP54-210ENST00000466048 MINPP1Q9UNW1 487 aa8.79□□□□□ -1
USP54-210ENST00000466048 RANBP6O60518 1105 aaKnown RBP8.79□□□□□ -1
USP54-210ENST00000466048 EAPPQ56P03 285 aaPredicted RBP8.79□□□□□ -1
USP54-210ENST00000466048 CCDC183Q5T5S1 534 aa8.79□□□□□ -1
USP54-210ENST00000466048 CREBRFQ8IUR6 639 aa8.79□□□□□ -1
USP54-210ENST00000466048 STRBPQ96SI9 672 aaKnown RBP8.79□□□□□ -1
USP54-210ENST00000466048 SLC4A4Q9Y6R1 1079 aa8.79□□□□□ -1
USP54-210ENST00000466048 ZNF804BA4D1E1 1349 aa8.79□□□□□ -1
USP54-210ENST00000466048 IQCA1LA6NCM1 817 aa8.78□□□□□ -1
USP54-210ENST00000466048 PES1O00541 588 aaKnown RBP8.78□□□□□ -1
USP54-210ENST00000466048 CALM1P0DP23 149 aa8.78□□□□□ -1
USP54-210ENST00000466048 CALM2P0DP24 149 aa8.78□□□□□ -1
USP54-210ENST00000466048 CALM3P0DP25 149 aa8.78□□□□□ -1
USP54-210ENST00000466048 CCDC96Q2M329 555 aa8.78□□□□□ -1
USP54-210ENST00000466048 WWC2Q6AWC2 1192 aa8.78□□□□□ -1
USP54-210ENST00000466048 GIMAP6Q6P9H5 292 aa8.78□□□□□ -1
USP54-210ENST00000466048 SULF1Q8IWU6 871 aa8.78□□□□□ -1
USP54-210ENST00000466048 DDX11Q96FC9 970 aa8.78□□□□□ -1
USP54-210ENST00000466048 MYH14Q7Z406 1995 aaKnown RBP8.78□□□□□ -1
USP54-210ENST00000466048 GOLGA8BA8MQT2 603 aa8.78□□□□□ -1
USP54-210ENST00000466048 NEMFO60524 1076 aa8.78□□□□□ -1
USP54-210ENST00000466048 LARGE1O95461 756 aa8.78□□□□□ -1
USP54-210ENST00000466048 BCAMP50895 628 aa8.78□□□□□ -1
USP54-210ENST00000466048 PABPC4Q13310 644 aaKnown RBP eCLIP8.78□□□□□ -1
USP54-210ENST00000466048 PPP2R5BQ15173 497 aa8.78□□□□□ -1
USP54-210ENST00000466048 TEX11Q8IYF3 940 aa8.78□□□□□ -1
USP54-210ENST00000466048 UBXN4Q92575 508 aa8.78□□□□□ -1
USP54-210ENST00000466048 KAT14Q9H8E8 782 aa8.78□□□□□ -1
USP54-210ENST00000466048 MYO6Q9UM54 1294 aa8.78□□□□□ -1
USP54-210ENST00000466048 ELP1O95163 1332 aa8.78□□□□□ -1
USP54-210ENST00000466048 EVCP57679 992 aa8.78□□□□□ -1
USP54-210ENST00000466048 ZSCAN23Q3MJ62 389 aa8.78□□□□□ -1
USP54-210ENST00000466048 LARP6Q9BRS8 491 aaKnown RBP8.78□□□□□ -1
USP54-210ENST00000466048 SRP68Q9UHB9 627 aaKnown RBP8.78□□□□□ -1
USP54-210ENST00000466048 ANGEL1Q9UNK9 670 aaKnown RBP8.78□□□□□ -1
USP54-210ENST00000466048 APOBRQ0VD83 1088 aa8.78□□□□□ -1
USP54-210ENST00000466048 MB21D2Q8IYB1 491 aaPredicted RBP8.78□□□□□ -1
USP54-210ENST00000466048 IFNL3Q8IZI9 196 aa8.78□□□□□ -1
USP54-210ENST00000466048 SMARCC2Q8TAQ2 1214 aa8.78□□□□□ -1
USP54-210ENST00000466048 NUP133Q8WUM0 1156 aa8.78□□□□□ -1
USP54-210ENST00000466048 TCEANC2Q96MN5 208 aa8.78□□□□□ -1
USP54-210ENST00000466048 ZHX1Q9UKY1 873 aaPredicted RBP8.78□□□□□ -1
USP54-210ENST00000466048 LY75O60449 1722 aa8.77□□□□□ -1
USP54-210ENST00000466048 KLF18A0A0U1RQI7 1052 aa8.77□□□□□ -1
USP54-210ENST00000466048 RCAN1P53805 252 aa8.77□□□□□ -1
USP54-210ENST00000466048 HAND2P61296 217 aa8.77□□□□□ -1
USP54-210ENST00000466048 SUPT20HL1Q3ZLR7 823 aa8.77□□□□□ -1
USP54-210ENST00000466048 CIAPIN1Q6FI81 312 aa8.77□□□□□ -1
USP54-210ENST00000466048 OTUD7BQ6GQQ9 843 aa8.77□□□□□ -1
USP54-210ENST00000466048 STYK1Q6J9G0 422 aa8.77□□□□□ -1
USP54-210ENST00000466048 CCDC94Q9BW85 323 aaPredicted RBP8.77□□□□□ -1
USP54-210ENST00000466048 C4BP0C0L5 1744 aa8.77□□□□□ -1.01
USP54-210ENST00000466048 PTPDC1A2A3K4 754 aa8.77□□□□□ -1.01
USP54-210ENST00000466048 FIBPO43427 364 aa8.77□□□□□ -1.01
USP54-210ENST00000466048 TGFB2P61812 414 aa8.77□□□□□ -1.01
USP54-210ENST00000466048 UVSSAQ2YD98 709 aa8.77□□□□□ -1.01
USP54-210ENST00000466048 SPATA32Q96LK8 384 aa8.77□□□□□ -1.01
USP54-210ENST00000466048 BCL2L12Q9HB09 334 aa8.77□□□□□ -1.01
USP54-210ENST00000466048 AS3MTQ9HBK9 375 aa8.77□□□□□ -1.01
USP54-210ENST00000466048 COL24A1Q17RW2 1714 aa8.77□□□□□ -1.01
USP54-210ENST00000466048 TCRBV5S4A2TA0A5A2 114 aa8.77□□□□□ -1.01
USP54-210ENST00000466048 PPP1R12BO60237 982 aaPredicted RBP8.77□□□□□ -1.01
USP54-210ENST00000466048 LRSAM1Q6UWE0 723 aa8.77□□□□□ -1.01
USP54-210ENST00000466048 PI16Q6UXB8 463 aa8.77□□□□□ -1.01
USP54-210ENST00000466048 STOX1Q6ZVD7 989 aa8.77□□□□□ -1.01
USP54-210ENST00000466048 TXLNBQ8N3L3 684 aa8.77□□□□□ -1.01
USP54-210ENST00000466048 ARHGEF10LQ9HCE6 1279 aa8.77□□□□□ -1.01
USP54-210ENST00000466048 IFIT3O14879 490 aaKnown RBP8.77□□□□□ -1.01
USP54-210ENST00000466048 TSPY3P0CV98 308 aa8.77□□□□□ -1.01
USP54-210ENST00000466048 TSPY8P0CW00 308 aa8.77□□□□□ -1.01
USP54-210ENST00000466048 PDIA3P30101 505 aaKnown RBP8.77□□□□□ -1.01
USP54-210ENST00000466048 BMS1Q14692 1282 aaKnown RBP8.77□□□□□ -1.01
USP54-210ENST00000466048 AKNAD1Q5T1N1 836 aa8.77□□□□□ -1.01
USP54-210ENST00000466048 FBXO33Q7Z6M2 555 aa8.77□□□□□ -1.01
USP54-210ENST00000466048 CAGE1Q8TC20 777 aa8.77□□□□□ -1.01
USP54-210ENST00000466048 ZNF526Q8TF50 670 aaPredicted RBP8.77□□□□□ -1.01
USP54-210ENST00000466048 TMOD4Q9NZQ9 345 aa8.77□□□□□ -1.01
USP54-210ENST00000466048 SLC12A7Q9Y666 1083 aa8.77□□□□□ -1.01
USP54-210ENST00000466048 OFD1O75665 1012 aa8.76□□□□□ -1.01
USP54-210ENST00000466048 TMEM67Q5HYA8 995 aa8.76□□□□□ -1.01
USP54-210ENST00000466048 OLFM4Q6UX06 510 aa8.76□□□□□ -1.01
USP54-210ENST00000466048 PODNQ7Z5L7 613 aa8.76□□□□□ -1.01
USP54-210ENST00000466048 CSADQ9Y600 493 aa8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms