RNA–Protein interactions for RNA: ENST00000460912.6

SYNE1-215, Transcript of spectrin repeat containing nuclear envelope protein 1, human

TSL 1 (best)

Gene SYNE1, Length 3,664 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE1-215	ENST00000460912	FANCG	O15287	622 aa		10.21	□□□□□ -0.78
SYNE1-215	ENST00000460912	FKBP4	Q02790	459 aa	Known RBP eCLIP	10.21	□□□□□ -0.78
SYNE1-215	ENST00000460912	TMEM139	Q8IV31	216 aa		10.21	□□□□□ -0.78
SYNE1-215	ENST00000460912	KCNG4	Q8TDN1	519 aa		10.21	□□□□□ -0.78
SYNE1-215	ENST00000460912	MRPS27	Q92552	414 aa	Known RBP	10.21	□□□□□ -0.78
SYNE1-215	ENST00000460912	BSDC1	Q9NW68	430 aa	Predicted RBP	10.21	□□□□□ -0.78
SYNE1-215	ENST00000460912	UQCRFS1P1	P0C7P4	283 aa		10.2	□□□□□ -0.78
SYNE1-215	ENST00000460912	GPT	P24298	496 aa		10.2	□□□□□ -0.78
SYNE1-215	ENST00000460912	OTUD7B	Q6GQQ9	843 aa		10.2	□□□□□ -0.78
SYNE1-215	ENST00000460912	ZNF396	Q96N95	335 aa	Predicted RBP	10.2	□□□□□ -0.78
SYNE1-215	ENST00000460912	ZSWIM5	Q9P217	1185 aa		10.2	□□□□□ -0.78
SYNE1-215	ENST00000460912	LRRFIP1	Q32MZ4	808 aa	Known RBP	10.2	□□□□□ -0.78
SYNE1-215	ENST00000460912	DPCR1	Q3MIW9	517 aa		10.2	□□□□□ -0.78
SYNE1-215	ENST00000460912	ANO1	Q5XXA6	986 aa		10.2	□□□□□ -0.78
SYNE1-215	ENST00000460912	LDHAL6A	Q6ZMR3	332 aa		10.2	□□□□□ -0.78
SYNE1-215	ENST00000460912	DEFB132	Q7Z7B7	95 aa		10.2	□□□□□ -0.78
SYNE1-215	ENST00000460912	IFNL3	Q8IZI9	196 aa		10.2	□□□□□ -0.78
SYNE1-215	ENST00000460912	CHMP4C	Q96CF2	233 aa		10.2	□□□□□ -0.78
SYNE1-215	ENST00000460912	INCENP	Q9NQS7	918 aa		10.2	□□□□□ -0.78
SYNE1-215	ENST00000460912	INTS13	Q9NVM9	706 aa		10.2	□□□□□ -0.78
SYNE1-215	ENST00000460912	IKBKB	O14920	756 aa		10.2	□□□□□ -0.78
SYNE1-215	ENST00000460912	IFNAR1	P17181	557 aa		10.2	□□□□□ -0.78
SYNE1-215	ENST00000460912	FGD1	P98174	961 aa		10.2	□□□□□ -0.78
SYNE1-215	ENST00000460912	APTX	Q7Z2E3	356 aa	Known RBP	10.2	□□□□□ -0.78
SYNE1-215	ENST00000460912	CRAMP1	Q96RY5	1269 aa		10.2	□□□□□ -0.78
SYNE1-215	ENST00000460912	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	10.2	□□□□□ -0.78
SYNE1-215	ENST00000460912		A0A087WWV3	80 aa		10.19	□□□□□ -0.78
SYNE1-215	ENST00000460912	ZNF213	O14771	459 aa		10.19	□□□□□ -0.78
SYNE1-215	ENST00000460912	HAND2	P61296	217 aa		10.19	□□□□□ -0.78
SYNE1-215	ENST00000460912	ARID5B	Q14865	1188 aa		10.19	□□□□□ -0.78
SYNE1-215	ENST00000460912	PKN1	Q16512	942 aa		10.19	□□□□□ -0.78
SYNE1-215	ENST00000460912	CCDC93	Q567U6	631 aa		10.19	□□□□□ -0.78
SYNE1-215	ENST00000460912	SLC9C2	Q5TAH2	1124 aa		10.19	□□□□□ -0.78
SYNE1-215	ENST00000460912	CCDC186	Q7Z3E2	898 aa		10.19	□□□□□ -0.78
SYNE1-215	ENST00000460912	METTL16	Q86W50	562 aa	Known RBP	10.19	□□□□□ -0.78
SYNE1-215	ENST00000460912	RTFDC1	Q9BY42	306 aa	Predicted RBP	10.19	□□□□□ -0.78
SYNE1-215	ENST00000460912	SEC31B	Q9NQW1	1179 aa		10.19	□□□□□ -0.78
SYNE1-215	ENST00000460912	PFKFB1	P16118	471 aa		10.19	□□□□□ -0.78
SYNE1-215	ENST00000460912	TBX2	Q13207	712 aa	Predicted RBP	10.19	□□□□□ -0.78
SYNE1-215	ENST00000460912	METTL24	Q5JXM2	366 aa		10.19	□□□□□ -0.78
SYNE1-215	ENST00000460912	ILDR2	Q71H61	639 aa		10.19	□□□□□ -0.78
SYNE1-215	ENST00000460912	TRMT112	Q9UI30	125 aa	Known RBP	10.19	□□□□□ -0.78
SYNE1-215	ENST00000460912	USP27X	A6NNY8	438 aa		10.19	□□□□□ -0.78
SYNE1-215	ENST00000460912	SRGN	P10124	158 aa		10.19	□□□□□ -0.78
SYNE1-215	ENST00000460912	GUCY1A2	P33402	732 aa		10.19	□□□□□ -0.78
SYNE1-215	ENST00000460912	MKRN1	Q9UHC7	482 aa	Known RBP	10.19	□□□□□ -0.78
SYNE1-215	ENST00000460912	FBXO2	Q9UK22	296 aa	Predicted RBP	10.19	□□□□□ -0.78
SYNE1-215	ENST00000460912	DDX52	Q9Y2R4	599 aa	Known RBP eCLIP	10.19	□□□□□ -0.78
SYNE1-215	ENST00000460912	ROBO3	Q96MS0	1386 aa		10.19	□□□□□ -0.78
SYNE1-215	ENST00000460912	GOLGA8B	A8MQT2	603 aa		10.18	□□□□□ -0.78
SYNE1-215	ENST00000460912	SLC5A1	P13866	664 aa		10.18	□□□□□ -0.78
SYNE1-215	ENST00000460912	NLRP12	P59046	1061 aa		10.18	□□□□□ -0.78
SYNE1-215	ENST00000460912	ARMCX5	Q6P1M9	558 aa		10.18	□□□□□ -0.78
SYNE1-215	ENST00000460912	LCORL	Q8N3X6	602 aa		10.18	□□□□□ -0.78
SYNE1-215	ENST00000460912	SLC16A10	Q8TF71	515 aa		10.18	□□□□□ -0.78
SYNE1-215	ENST00000460912	CHMP3	Q9Y3E7	222 aa		10.18	□□□□□ -0.78
SYNE1-215	ENST00000460912	SPTLC2	O15270	562 aa		10.18	□□□□□ -0.78
SYNE1-215	ENST00000460912	SERPINB2	P05120	415 aa		10.18	□□□□□ -0.78
SYNE1-215	ENST00000460912	ZNF18	P17022	549 aa		10.18	□□□□□ -0.78
SYNE1-215	ENST00000460912	SH3RF1	Q7Z6J0	888 aa		10.18	□□□□□ -0.78
SYNE1-215	ENST00000460912	VPS37D	Q86XT2	251 aa		10.18	□□□□□ -0.78
SYNE1-215	ENST00000460912	BRIP1	Q9BX63	1249 aa		10.18	□□□□□ -0.78
SYNE1-215	ENST00000460912	DDX24	Q9GZR7	859 aa	Known RBP eCLIP	10.18	□□□□□ -0.78
SYNE1-215	ENST00000460912	IMPACT	Q9P2X3	320 aa		10.18	□□□□□ -0.78
SYNE1-215	ENST00000460912	WTIP	A6NIX2	430 aa	Predicted RBP	10.18	□□□□□ -0.78
SYNE1-215	ENST00000460912	SMIM22	K7EJ46	135 aa		10.18	□□□□□ -0.78
SYNE1-215	ENST00000460912	RFC4	P35249	363 aa		10.18	□□□□□ -0.78
SYNE1-215	ENST00000460912	KRT40	Q6A162	431 aa		10.18	□□□□□ -0.78
SYNE1-215	ENST00000460912	NLGN1	Q8N2Q7	840 aa		10.18	□□□□□ -0.78
SYNE1-215	ENST00000460912	FSIP1	Q8NA03	581 aa		10.18	□□□□□ -0.78
SYNE1-215	ENST00000460912	ORC3	Q9UBD5	711 aa	Predicted RBP	10.18	□□□□□ -0.78
SYNE1-215	ENST00000460912	RBBP6	Q7Z6E9	1792 aa	Known RBP	10.17	□□□□□ -0.78
SYNE1-215	ENST00000460912		A0A1B0GVL5	298 aa		10.17	□□□□□ -0.78
SYNE1-215	ENST00000460912		H3BQV1	296 aa		10.17	□□□□□ -0.78
SYNE1-215	ENST00000460912	ZNF202	O95125	648 aa		10.17	□□□□□ -0.78
SYNE1-215	ENST00000460912	MMP1	P03956	469 aa		10.17	□□□□□ -0.78
SYNE1-215	ENST00000460912	HSP90B1	P14625	803 aa	Known RBP	10.17	□□□□□ -0.78
SYNE1-215	ENST00000460912	IFFO2	Q5TF58	517 aa		10.17	□□□□□ -0.78
SYNE1-215	ENST00000460912	ZNF579	Q8NAF0	562 aa	Known RBP	10.17	□□□□□ -0.78
SYNE1-215	ENST00000460912	CELF1	Q92879	486 aa	Known RBP	10.17	□□□□□ -0.78
SYNE1-215	ENST00000460912	SETDB2	Q96T68	719 aa		10.17	□□□□□ -0.78
SYNE1-215	ENST00000460912	ZHX1	Q9UKY1	873 aa	Predicted RBP	10.17	□□□□□ -0.78
SYNE1-215	ENST00000460912	SNAP23	O00161	211 aa		10.17	□□□□□ -0.78
SYNE1-215	ENST00000460912	RIOK3	O14730	519 aa	Known RBP	10.17	□□□□□ -0.78
SYNE1-215	ENST00000460912	AKNAD1	Q5T1N1	836 aa		10.17	□□□□□ -0.78
SYNE1-215	ENST00000460912	C8orf76	Q96K31	380 aa		10.17	□□□□□ -0.78
SYNE1-215	ENST00000460912	PHIP	Q8WWQ0	1821 aa		10.17	□□□□□ -0.78
SYNE1-215	ENST00000460912	VGLL3	A8MV65	326 aa		10.17	□□□□□ -0.78
SYNE1-215	ENST00000460912		M0R2N6	131 aa		10.17	□□□□□ -0.78
SYNE1-215	ENST00000460912	ZPR1	O75312	459 aa		10.17	□□□□□ -0.78
SYNE1-215	ENST00000460912	E4F1	Q66K89	784 aa	Predicted RBP	10.17	□□□□□ -0.78
SYNE1-215	ENST00000460912	MPND	Q8N594	471 aa		10.17	□□□□□ -0.78
SYNE1-215	ENST00000460912	MAP7D2	Q96T17	732 aa		10.17	□□□□□ -0.78
SYNE1-215	ENST00000460912	MINPP1	Q9UNW1	487 aa		10.17	□□□□□ -0.78
SYNE1-215	ENST00000460912	KIF3A	Q9Y496	699 aa		10.17	□□□□□ -0.78
SYNE1-215	ENST00000460912	LOC285556	D6RIA3	1793 aa		10.17	□□□□□ -0.78
SYNE1-215	ENST00000460912		B4E1Z4	1266 aa		10.16	□□□□□ -0.78
SYNE1-215	ENST00000460912	PRKAB2	O43741	272 aa		10.16	□□□□□ -0.78
SYNE1-215	ENST00000460912	DHX16	O60231	1041 aa	Known RBP	10.16	□□□□□ -0.78
SYNE1-215	ENST00000460912	STYK1	Q6J9G0	422 aa		10.16	□□□□□ -0.78

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