RNA–Protein interactions for RNA: ENST00000458046.6

SYNE2-207, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 2,669 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-207ENST00000458046 CLIP2Q9UDT6 1046 aa13.61□□□□□ -0.23
SYNE2-207ENST00000458046 RCOR1Q9UKL0 485 aa13.61□□□□□ -0.23
SYNE2-207ENST00000458046 TRPM3Q9HCF6 1732 aaPredicted RBP13.61□□□□□ -0.23
SYNE2-207ENST00000458046 SLIT2O94813 1529 aa13.6□□□□□ -0.23
SYNE2-207ENST00000458046 RFX7Q2KHR2 1363 aa13.6□□□□□ -0.23
SYNE2-207ENST00000458046 MAST3O60307 1309 aa13.6□□□□□ -0.23
SYNE2-207ENST00000458046 EYA2O00167 538 aa13.6□□□□□ -0.23
SYNE2-207ENST00000458046 PRC1O43663 620 aa13.6□□□□□ -0.23
SYNE2-207ENST00000458046 PDIA3P30101 505 aaKnown RBP13.6□□□□□ -0.23
SYNE2-207ENST00000458046 HAND2P61296 217 aa13.6□□□□□ -0.23
SYNE2-207ENST00000458046 CHAF1AQ13111 956 aaPredicted RBP13.6□□□□□ -0.23
SYNE2-207ENST00000458046 FBXO33Q7Z6M2 555 aa13.6□□□□□ -0.23
SYNE2-207ENST00000458046 DIS3Q9Y2L1 958 aaKnown RBP13.6□□□□□ -0.23
SYNE2-207ENST00000458046 SCINQ9Y6U3 715 aa13.6□□□□□ -0.23
SYNE2-207ENST00000458046 M0R2C6 588 aa13.6□□□□□ -0.23
SYNE2-207ENST00000458046 RNF113AO15541 343 aaKnown RBP13.6□□□□□ -0.23
SYNE2-207ENST00000458046 PPP1R37O75864 691 aa13.6□□□□□ -0.23
SYNE2-207ENST00000458046 OTUD7BQ6GQQ9 843 aa13.6□□□□□ -0.23
SYNE2-207ENST00000458046 NAA16Q6N069 864 aaPredicted RBP13.6□□□□□ -0.23
SYNE2-207ENST00000458046 ZSCAN25Q6NSZ9 544 aa13.6□□□□□ -0.23
SYNE2-207ENST00000458046 BCL2L12Q9HB09 334 aa13.6□□□□□ -0.23
SYNE2-207ENST00000458046 SCN11AQ9UI33 1791 aa13.6□□□□□ -0.23
SYNE2-207ENST00000458046 GOLGA6L19H0YKK7 550 aa13.59□□□□□ -0.23
SYNE2-207ENST00000458046 FECHP22830 423 aa13.59□□□□□ -0.23
SYNE2-207ENST00000458046 ME1P48163 572 aa13.59□□□□□ -0.23
SYNE2-207ENST00000458046 LDLRAD1Q5T700 205 aa13.59□□□□□ -0.23
SYNE2-207ENST00000458046 ZNF467Q7Z7K2 595 aaPredicted RBP13.59□□□□□ -0.23
SYNE2-207ENST00000458046 CCDC144CPQ8IYA2 1237 aa13.59□□□□□ -0.23
SYNE2-207ENST00000458046 OSBP2Q969R2 916 aa13.59□□□□□ -0.23
SYNE2-207ENST00000458046 MPHOSPH6Q99547 160 aaKnown RBP13.59□□□□□ -0.23
SYNE2-207ENST00000458046 TMEM51Q9NW97 253 aa13.59□□□□□ -0.23
SYNE2-207ENST00000458046 TCEAL9Q9UHQ7 104 aa13.59□□□□□ -0.23
SYNE2-207ENST00000458046 PALLDQ8WX93 1383 aa13.59□□□□□ -0.23
SYNE2-207ENST00000458046 RASSF7Q02833 373 aa13.59□□□□□ -0.23
SYNE2-207ENST00000458046 WASHC4Q2M389 1173 aa13.59□□□□□ -0.23
SYNE2-207ENST00000458046 HSP90AB3PQ58FF7 597 aa13.59□□□□□ -0.23
SYNE2-207ENST00000458046 RAB11FIP4Q86YS3 637 aa13.59□□□□□ -0.23
SYNE2-207ENST00000458046 CACTINQ8WUQ7 758 aaKnown RBP13.59□□□□□ -0.23
SYNE2-207ENST00000458046 C16orf45Q96MC5 204 aaPredicted RBP13.59□□□□□ -0.23
SYNE2-207ENST00000458046 EPAS1Q99814 870 aa13.59□□□□□ -0.23
SYNE2-207ENST00000458046 SNW1Q13573 536 aaKnown RBP13.58□□□□□ -0.23
SYNE2-207ENST00000458046 IQCB1Q15051 598 aa13.58□□□□□ -0.23
SYNE2-207ENST00000458046 LONRF1Q17RB8 773 aa13.58□□□□□ -0.23
SYNE2-207ENST00000458046 CCDC73Q6ZRK6 1079 aa13.58□□□□□ -0.23
SYNE2-207ENST00000458046 ADORA1P30542 326 aa13.58□□□□□ -0.24
SYNE2-207ENST00000458046 ARID5BQ14865 1188 aa13.58□□□□□ -0.24
SYNE2-207ENST00000458046 GPR108Q9NPR9 543 aa13.58□□□□□ -0.24
SYNE2-207ENST00000458046 KINO60870 393 aaKnown RBP13.57□□□□□ -0.24
SYNE2-207ENST00000458046 LDHAP00338 332 aaKnown RBP13.57□□□□□ -0.24
SYNE2-207ENST00000458046 LDHCP07864 332 aa13.57□□□□□ -0.24
SYNE2-207ENST00000458046 FDPSP14324 419 aaKnown RBP13.57□□□□□ -0.24
SYNE2-207ENST00000458046 UBE4AQ14139 1066 aa13.57□□□□□ -0.24
SYNE2-207ENST00000458046 FSIP1Q8NA03 581 aa13.57□□□□□ -0.24
SYNE2-207ENST00000458046 RSPH1Q8WYR4 309 aa13.57□□□□□ -0.24
SYNE2-207ENST00000458046 CAMKK2Q96RR4 588 aa13.57□□□□□ -0.24
SYNE2-207ENST00000458046 AGXT2Q9BYV1 514 aa13.57□□□□□ -0.24
SYNE2-207ENST00000458046 RGS19P49795 217 aa13.57□□□□□ -0.24
SYNE2-207ENST00000458046 ZNF396Q96N95 335 aaPredicted RBP13.57□□□□□ -0.24
SYNE2-207ENST00000458046 POLR3EQ9NVU0 708 aa13.57□□□□□ -0.24
SYNE2-207ENST00000458046 THRAP3Q9Y2W1 955 aaKnown RBP13.57□□□□□ -0.24
SYNE2-207ENST00000458046 AFDNP55196 1824 aaKnown RBP13.57□□□□□ -0.24
SYNE2-207ENST00000458046 BECN2A8MW95 431 aa13.57□□□□□ -0.24
SYNE2-207ENST00000458046 POLR3DP05423 398 aaPredicted RBP13.57□□□□□ -0.24
SYNE2-207ENST00000458046 TOM1L2Q6ZVM7 507 aa13.57□□□□□ -0.24
SYNE2-207ENST00000458046 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.57□□□□□ -0.24
SYNE2-207ENST00000458046 CCDC191Q8NCU4 936 aa13.57□□□□□ -0.24
SYNE2-207ENST00000458046 ZNF274Q96GC6 653 aaPredicted RBP13.57□□□□□ -0.24
SYNE2-207ENST00000458046 CCDC94Q9BW85 323 aaPredicted RBP13.57□□□□□ -0.24
SYNE2-207ENST00000458046 GJB4Q9NTQ9 266 aa13.57□□□□□ -0.24
SYNE2-207ENST00000458046 A0A1B0GVL5 298 aa13.56□□□□□ -0.24
SYNE2-207ENST00000458046 MAP2K5Q13163 448 aa13.56□□□□□ -0.24
SYNE2-207ENST00000458046 STX1AQ16623 288 aa13.56□□□□□ -0.24
SYNE2-207ENST00000458046 CCDC57Q2TAC2 916 aa13.56□□□□□ -0.24
SYNE2-207ENST00000458046 TTC39AQ5SRH9 613 aa13.56□□□□□ -0.24
SYNE2-207ENST00000458046 ZNF746Q6NUN9 644 aaPredicted RBP13.56□□□□□ -0.24
SYNE2-207ENST00000458046 ENGASEQ8NFI3 743 aa13.56□□□□□ -0.24
SYNE2-207ENST00000458046 SERPINB4P48594 390 aa13.56□□□□□ -0.24
SYNE2-207ENST00000458046 CBLBQ13191 982 aa13.56□□□□□ -0.24
SYNE2-207ENST00000458046 SCARF1Q14162 830 aa13.56□□□□□ -0.24
SYNE2-207ENST00000458046 CCDC158Q5M9N0 1113 aa13.56□□□□□ -0.24
SYNE2-207ENST00000458046 PCDHA7Q9UN72 937 aa13.56□□□□□ -0.24
SYNE2-207ENST00000458046 SALL1Q9NSC2 1324 aa13.55□□□□□ -0.24
SYNE2-207ENST00000458046 CARMIL3Q8ND23 1372 aa13.55□□□□□ -0.24
SYNE2-207ENST00000458046 CTAGE5O15320 804 aa13.55□□□□□ -0.24
SYNE2-207ENST00000458046 FGAP02671 866 aa13.55□□□□□ -0.24
SYNE2-207ENST00000458046 TNNT1P13805 278 aa13.55□□□□□ -0.24
SYNE2-207ENST00000458046 FAM160A1Q05DH4 1040 aa13.55□□□□□ -0.24
SYNE2-207ENST00000458046 TPD52L1Q16890 204 aaPredicted RBP13.55□□□□□ -0.24
SYNE2-207ENST00000458046 PPP4R3BQ5MIZ7 849 aa13.55□□□□□ -0.24
SYNE2-207ENST00000458046 PI16Q6UXB8 463 aa13.55□□□□□ -0.24
SYNE2-207ENST00000458046 FAM89AQ96GI7 184 aa13.55□□□□□ -0.24
SYNE2-207ENST00000458046 XAGE2Q96GT9 111 aa13.55□□□□□ -0.24
SYNE2-207ENST00000458046 MYCBPQ99417 103 aaPredicted RBP13.55□□□□□ -0.24
SYNE2-207ENST00000458046 SDF4Q9BRK5 362 aa13.55□□□□□ -0.24
SYNE2-207ENST00000458046 PPP1R12CQ9BZL4 782 aa13.55□□□□□ -0.24
SYNE2-207ENST00000458046 BRINP2Q9C0B6 783 aa13.55□□□□□ -0.24
SYNE2-207ENST00000458046 ARFGEF2Q9Y6D5 1785 aa13.55□□□□□ -0.24
SYNE2-207ENST00000458046 CAVIN2O95810 425 aa13.55□□□□□ -0.24
SYNE2-207ENST00000458046 KLRG1Q96E93 195 aa13.55□□□□□ -0.24
SYNE2-207ENST00000458046 ZBTB12Q9Y330 459 aaPredicted RBP13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms