RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 USP17L5A8MUK1 530 aa16.33■□□□□ 0.2
HMGB3-204ENST00000448905 IGSF3O75054 1194 aa16.33■□□□□ 0.2
HMGB3-204ENST00000448905 ARID4AP29374 1257 aaPredicted RBP16.33■□□□□ 0.2
HMGB3-204ENST00000448905 CAP2P40123 477 aa16.33■□□□□ 0.2
HMGB3-204ENST00000448905 FXR1P51114 621 aaKnown RBP eCLIP16.33■□□□□ 0.2
HMGB3-204ENST00000448905 OS9Q13438 667 aaPredicted RBP16.33■□□□□ 0.2
HMGB3-204ENST00000448905 ANKRD13CQ8N6S4 541 aa16.33■□□□□ 0.2
HMGB3-204ENST00000448905 TRIM34Q9BYJ4 488 aa16.33■□□□□ 0.2
HMGB3-204ENST00000448905 TAOK2Q9UL54 1235 aa16.33■□□□□ 0.2
HMGB3-204ENST00000448905 TRIM27P14373 513 aa16.32■□□□□ 0.2
HMGB3-204ENST00000448905 TTC39AQ5SRH9 613 aa16.32■□□□□ 0.2
HMGB3-204ENST00000448905 NAA16Q6N069 864 aaPredicted RBP16.32■□□□□ 0.2
HMGB3-204ENST00000448905 FOXP4Q8IVH2 680 aaPredicted RBP16.32■□□□□ 0.2
HMGB3-204ENST00000448905 UNC93B1Q9H1C4 597 aa16.32■□□□□ 0.2
HMGB3-204ENST00000448905 GPR108Q9NPR9 543 aa16.32■□□□□ 0.2
HMGB3-204ENST00000448905 AK9Q5TCS8 1911 aa16.31■□□□□ 0.2
HMGB3-204ENST00000448905 FARP2O94887 1054 aaPredicted RBP16.31■□□□□ 0.2
HMGB3-204ENST00000448905 FAM110CQ1W6H9 321 aa16.31■□□□□ 0.2
HMGB3-204ENST00000448905 CLUAP1Q96AJ1 413 aa16.31■□□□□ 0.2
HMGB3-204ENST00000448905 SHISA4Q96DD7 197 aa16.31■□□□□ 0.2
HMGB3-204ENST00000448905 TMOD4Q9NZQ9 345 aa16.31■□□□□ 0.2
HMGB3-204ENST00000448905 PNMA6EA0A0J9YXQ4 647 aa16.3■□□□□ 0.2
HMGB3-204ENST00000448905 BCAR3O75815 825 aa16.3■□□□□ 0.2
HMGB3-204ENST00000448905 INHAP05111 366 aa16.3■□□□□ 0.2
HMGB3-204ENST00000448905 SLURP2P0DP57 97 aa16.3■□□□□ 0.2
HMGB3-204ENST00000448905 ELNP15502 786 aa16.3■□□□□ 0.2
HMGB3-204ENST00000448905 TREML2Q5T2D2 321 aa16.3■□□□□ 0.2
HMGB3-204ENST00000448905 ZKSCAN2Q63HK3 967 aa16.3■□□□□ 0.2
HMGB3-204ENST00000448905 PI16Q6UXB8 463 aa16.3■□□□□ 0.2
HMGB3-204ENST00000448905 CHRDL2Q6WN34 429 aa16.3■□□□□ 0.2
HMGB3-204ENST00000448905 ZNF384Q8TF68 577 aa16.3■□□□□ 0.2
HMGB3-204ENST00000448905 DEFB118Q96PH6 123 aa16.3■□□□□ 0.2
HMGB3-204ENST00000448905 RFX7Q2KHR2 1363 aa16.29■□□□□ 0.2
HMGB3-204ENST00000448905 FAM196BA6NMK8 535 aa16.29■□□□□ 0.2
HMGB3-204ENST00000448905 EVI5O60447 810 aa16.29■□□□□ 0.2
HMGB3-204ENST00000448905 ASNSP08243 561 aa16.29■□□□□ 0.2
HMGB3-204ENST00000448905 MCAMP43121 646 aa16.29■□□□□ 0.2
HMGB3-204ENST00000448905 HMGCS2P54868 508 aa16.29■□□□□ 0.2
HMGB3-204ENST00000448905 PPP4CP60510 307 aa16.29■□□□□ 0.2
HMGB3-204ENST00000448905 UBE2Q1Q7Z7E8 422 aa16.29■□□□□ 0.2
HMGB3-204ENST00000448905 CCDC84Q86UT8 332 aaPredicted RBP16.29■□□□□ 0.2
HMGB3-204ENST00000448905 CRACR2BQ8N4Y2 399 aaPredicted RBP16.29■□□□□ 0.2
HMGB3-204ENST00000448905 SH3RF3Q8TEJ3 882 aaPredicted RBP16.29■□□□□ 0.2
HMGB3-204ENST00000448905 GINM1Q9NU53 330 aa16.29■□□□□ 0.2
HMGB3-204ENST00000448905 C19orf81C9J6K1 198 aa16.28■□□□□ 0.2
HMGB3-204ENST00000448905 SURF6O75683 361 aaKnown RBP16.28■□□□□ 0.2
HMGB3-204ENST00000448905 IRX3P78415 501 aaPredicted RBP16.28■□□□□ 0.2
HMGB3-204ENST00000448905 ATP8B2P98198 1209 aa16.28■□□□□ 0.2
HMGB3-204ENST00000448905 SH3D19Q5HYK7 790 aa16.28■□□□□ 0.2
HMGB3-204ENST00000448905 CERS3Q8IU89 383 aa16.28■□□□□ 0.2
HMGB3-204ENST00000448905 CCAR1Q8IX12 1150 aaKnown RBP16.28■□□□□ 0.2
HMGB3-204ENST00000448905 WDR18Q9BV38 432 aa16.28■□□□□ 0.2
HMGB3-204ENST00000448905 SNRKQ9NRH2 765 aa16.28■□□□□ 0.2
HMGB3-204ENST00000448905 AATFQ9NY61 560 aaKnown RBP eCLIP16.28■□□□□ 0.2
HMGB3-204ENST00000448905 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.28■□□□□ 0.2
HMGB3-204ENST00000448905 HLA-DOAP06340 250 aa16.27■□□□□ 0.2
HMGB3-204ENST00000448905 BACE1P56817 501 aa16.27■□□□□ 0.2
HMGB3-204ENST00000448905 TNNI3KQ59H18 835 aa16.27■□□□□ 0.2
HMGB3-204ENST00000448905 TGFBRAP1Q8WUH2 860 aa16.27■□□□□ 0.2
HMGB3-204ENST00000448905 ZNF512BQ96KM6 892 aaPredicted RBP16.27■□□□□ 0.2
HMGB3-204ENST00000448905 ASCC2Q9H1I8 757 aaPredicted RBP16.27■□□□□ 0.2
HMGB3-204ENST00000448905 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.27■□□□□ 0.2
HMGB3-204ENST00000448905 FPGT-TNNI3KV9GXZ4 949 aa16.27■□□□□ 0.2
HMGB3-204ENST00000448905 MYH13Q9UKX3 1938 aa16.26■□□□□ 0.19
HMGB3-204ENST00000448905 USP17L10C9JJH3 530 aa16.26■□□□□ 0.19
HMGB3-204ENST00000448905 NECAB2Q7Z6G3 386 aa16.26■□□□□ 0.19
HMGB3-204ENST00000448905 FTSJ3Q8IY81 847 aaKnown RBP16.26■□□□□ 0.19
HMGB3-204ENST00000448905 TMEM57Q8N5G2 664 aa16.26■□□□□ 0.19
HMGB3-204ENST00000448905 GPRC5AQ8NFJ5 357 aa16.26■□□□□ 0.19
HMGB3-204ENST00000448905 HMX1Q9NP08 348 aaPredicted RBP16.26■□□□□ 0.19
HMGB3-204ENST00000448905 PAK6Q9NQU5 681 aaPredicted RBP16.26■□□□□ 0.19
HMGB3-204ENST00000448905 RBM27Q9P2N5 1060 aaKnown RBP16.26■□□□□ 0.19
HMGB3-204ENST00000448905 HMGCRP04035 888 aa16.25■□□□□ 0.19
HMGB3-204ENST00000448905 HOXA7P31268 230 aaPredicted RBP16.25■□□□□ 0.19
HMGB3-204ENST00000448905 POLA2Q14181 598 aa16.25■□□□□ 0.19
HMGB3-204ENST00000448905 MAPKAPK5Q8IW41 473 aa16.25■□□□□ 0.19
HMGB3-204ENST00000448905 ANKLE1Q8NAG6 615 aa16.25■□□□□ 0.19
HMGB3-204ENST00000448905 SSH3Q8TE77 659 aa16.25■□□□□ 0.19
HMGB3-204ENST00000448905 DBNDD2Q9BQY9 259 aa16.25■□□□□ 0.19
HMGB3-204ENST00000448905 RPTORQ8N122 1335 aa16.24■□□□□ 0.19
HMGB3-204ENST00000448905 COL2A1P02458 1487 aaPredicted RBP16.24■□□□□ 0.19
HMGB3-204ENST00000448905 ZBTB7BO15156 539 aaPredicted RBP16.24■□□□□ 0.19
HMGB3-204ENST00000448905 CYP2E1P05181 493 aaPredicted RBP16.24■□□□□ 0.19
HMGB3-204ENST00000448905 MTMR2Q13614 643 aa16.24■□□□□ 0.19
HMGB3-204ENST00000448905 TMED8Q6PL24 325 aaPredicted RBP16.24■□□□□ 0.19
HMGB3-204ENST00000448905 METTL16Q86W50 562 aaKnown RBP16.24■□□□□ 0.19
HMGB3-204ENST00000448905 TRMT44Q8IYL2 757 aaKnown RBP16.24■□□□□ 0.19
HMGB3-204ENST00000448905 GTF3C2Q8WUA4 911 aaPredicted RBP16.24■□□□□ 0.19
HMGB3-204ENST00000448905 PAWRQ96IZ0 340 aaKnown RBP16.24■□□□□ 0.19
HMGB3-204ENST00000448905 P2RX7Q99572 595 aaKnown RBP16.24■□□□□ 0.19
HMGB3-204ENST00000448905 CRISPLD2Q9H0B8 497 aa16.24■□□□□ 0.19
HMGB3-204ENST00000448905 XRN2Q9H0D6 950 aaKnown RBP eCLIP16.24■□□□□ 0.192e-6■■■■■ 36
HMGB3-204ENST00000448905 MORF4L1Q9UBU8 362 aa16.24■□□□□ 0.19
HMGB3-204ENST00000448905 GJD2Q9UKL4 321 aa16.24■□□□□ 0.19
HMGB3-204ENST00000448905 PALD1Q9ULE6 856 aa16.24■□□□□ 0.19
HMGB3-204ENST00000448905 A0A1W2PPC1 479 aa16.23■□□□□ 0.19
HMGB3-204ENST00000448905 CYP7A1P22680 504 aa16.23■□□□□ 0.19
HMGB3-204ENST00000448905 MAPK4P31152 587 aa16.23■□□□□ 0.19
HMGB3-204ENST00000448905 ZAP70P43403 619 aa16.23■□□□□ 0.19
HMGB3-204ENST00000448905 PDE3AQ14432 1141 aa16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms