RNA–Protein interactions for RNA: ENST00000440048.1

VARS-217, Transcript of valyl-tRNA synthetase, humanhuman

TSL 1 (best)

Gene VARS, Length 804 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-217ENST00000440048 SLFNL1Q499Z3 407 aa28.62■■■□□ 2.17
VARS-217ENST00000440048 OTUD7BQ6GQQ9 843 aa28.62■■■□□ 2.17
VARS-217ENST00000440048 SAP30BPQ9UHR5 308 aaKnown RBP28.62■■■□□ 2.17
VARS-217ENST00000440048 PALD1Q9ULE6 856 aa28.62■■■□□ 2.17
VARS-217ENST00000440048 CTNND1O60716 968 aaKnown RBP28.61■■■□□ 2.17
VARS-217ENST00000440048 R3HDMLQ9H3Y0 253 aa28.61■■■□□ 2.17
VARS-217ENST00000440048 ZBTB47Q9UFB7 747 aaPredicted RBP28.61■■■□□ 2.17
VARS-217ENST00000440048 HERC5Q9UII4 1024 aaKnown RBP28.61■■■□□ 2.17
VARS-217ENST00000440048 TTC41PQ6P2S7 1318 aa28.61■■■□□ 2.17
VARS-217ENST00000440048 SNAPC2Q13487 334 aa28.6■■■□□ 2.17
VARS-217ENST00000440048 RWDD1Q9H446 243 aaPredicted RBP28.6■■■□□ 2.17
VARS-217ENST00000440048 PICK1Q9NRD5 415 aa28.6■■■□□ 2.17
VARS-217ENST00000440048 CHGBP05060 677 aa28.59■■■□□ 2.17
VARS-217ENST00000440048 CETPP11597 493 aa28.59■■■□□ 2.17
VARS-217ENST00000440048 PTPRAP18433 802 aa28.58■■■□□ 2.17
VARS-217ENST00000440048 DGKZQ13574 1117 aa28.58■■■□□ 2.17
VARS-217ENST00000440048 NOM1Q5C9Z4 860 aaKnown RBP28.58■■■□□ 2.17
VARS-217ENST00000440048 FOXP4Q8IVH2 680 aaPredicted RBP28.58■■■□□ 2.17
VARS-217ENST00000440048 CRNKL1Q9BZJ0 848 aaKnown RBP28.58■■■□□ 2.17
VARS-217ENST00000440048 KCNH4Q9UQ05 1017 aa28.58■■■□□ 2.17
VARS-217ENST00000440048 PHIPQ8WWQ0 1821 aa28.57■■■□□ 2.16
VARS-217ENST00000440048 ATAD5Q96QE3 1844 aa28.57■■■□□ 2.16
VARS-217ENST00000440048 GPR25O00155 361 aa28.57■■■□□ 2.16
VARS-217ENST00000440048 ERC2O15083 957 aa28.57■■■□□ 2.16
VARS-217ENST00000440048 MX1P20591 662 aa28.57■■■□□ 2.16
VARS-217ENST00000440048 RRP1BQ14684 758 aaKnown RBP28.57■■■□□ 2.16
VARS-217ENST00000440048 UBE3CQ15386 1083 aa28.57■■■□□ 2.16
VARS-217ENST00000440048 SLC4A8Q2Y0W8 1093 aa28.57■■■□□ 2.16
VARS-217ENST00000440048 ZSCAN25Q6NSZ9 544 aa28.57■■■□□ 2.16
VARS-217ENST00000440048 METTL16Q86W50 562 aaKnown RBP28.57■■■□□ 2.16
VARS-217ENST00000440048 LCORLQ8N3X6 602 aa28.57■■■□□ 2.16
VARS-217ENST00000440048 PI4K2BQ8TCG2 481 aa28.57■■■□□ 2.16
VARS-217ENST00000440048 MCOLN1Q9GZU1 580 aa28.57■■■□□ 2.16
VARS-217ENST00000440048 SALL3Q9BXA9 1300 aa28.57■■■□□ 2.16
VARS-217ENST00000440048 NAV1Q8NEY1 1877 aa28.57■■■□□ 2.16
VARS-217ENST00000440048 IGHDP01880 384 aa28.56■■■□□ 2.16
VARS-217ENST00000440048 HLA-DOAP06340 250 aa28.56■■■□□ 2.16
VARS-217ENST00000440048 IRX6P78412 446 aaPredicted RBP28.56■■■□□ 2.16
VARS-217ENST00000440048 FAM43AQ8N2R8 423 aa28.56■■■□□ 2.16
VARS-217ENST00000440048 KBTBD3Q8NAB2 608 aa28.56■■■□□ 2.16
VARS-217ENST00000440048 ZNF296Q8WUU4 475 aaPredicted RBP28.56■■■□□ 2.16
VARS-217ENST00000440048 DNAJC18Q9H819 358 aa28.56■■■□□ 2.16
VARS-217ENST00000440048 ARMT1Q9H993 441 aa28.56■■■□□ 2.16
VARS-217ENST00000440048 ZHX2Q9Y6X8 837 aa28.56■■■□□ 2.16
VARS-217ENST00000440048 GLRX3O76003 335 aaKnown RBP28.55■■■□□ 2.16
VARS-217ENST00000440048 CRHR2Q13324 411 aa28.55■■■□□ 2.16
VARS-217ENST00000440048 SMC5Q8IY18 1101 aa28.55■■■□□ 2.16
VARS-217ENST00000440048 CRACR2BQ8N4Y2 399 aaPredicted RBP28.55■■■□□ 2.16
VARS-217ENST00000440048 FRMD4AQ9P2Q2 1039 aaPredicted RBP28.55■■■□□ 2.16
VARS-217ENST00000440048 DDX60LQ5H9U9 1706 aaKnown RBP28.55■■■□□ 2.16
VARS-217ENST00000440048 CXCL11O14625 94 aa28.54■■■□□ 2.16
VARS-217ENST00000440048 MBD4O95243 580 aa28.54■■■□□ 2.16
VARS-217ENST00000440048 CAP2P40123 477 aa28.54■■■□□ 2.16
VARS-217ENST00000440048 TRIM34Q9BYJ4 488 aa28.54■■■□□ 2.16
VARS-217ENST00000440048 BTBD19C9JJ37 291 aa28.53■■■□□ 2.16
VARS-217ENST00000440048 CCDC84Q86UT8 332 aaPredicted RBP28.53■■■□□ 2.16
VARS-217ENST00000440048 SDR42E1Q8WUS8 393 aa28.53■■■□□ 2.16
VARS-217ENST00000440048 AFG3L2Q9Y4W6 797 aa28.53■■■□□ 2.16
VARS-217ENST00000440048 PTPRFP10586 1907 aa28.52■■■□□ 2.16
VARS-217ENST00000440048 MOGSQ13724 837 aa28.52■■■□□ 2.16
VARS-217ENST00000440048 TTC6Q86TZ1 520 aa28.52■■■□□ 2.16
VARS-217ENST00000440048 TAF1CQ15572 869 aaPredicted RBP28.51■■■□□ 2.15
VARS-217ENST00000440048 B4GALNT3Q6L9W6 998 aa28.51■■■□□ 2.15
VARS-217ENST00000440048 CTU1Q7Z7A3 348 aaKnown RBP28.51■■■□□ 2.15
VARS-217ENST00000440048 LNPKQ9C0E8 428 aa28.51■■■□□ 2.15
VARS-217ENST00000440048 PUS7LQ9H0K6 701 aaKnown RBP28.51■■■□□ 2.15
VARS-217ENST00000440048 ZCCHC17Q9NP64 241 aaKnown RBP28.51■■■□□ 2.15
VARS-217ENST00000440048 PRKAB2O43741 272 aa28.5■■■□□ 2.15
VARS-217ENST00000440048 FKTNO75072 461 aa28.5■■■□□ 2.15
VARS-217ENST00000440048 EHD4Q9H223 541 aa28.5■■■□□ 2.15
VARS-217ENST00000440048 DCP1AQ9NPI6 582 aaPredicted RBP28.5■■■□□ 2.15
VARS-217ENST00000440048 MCM9Q9NXL9 1143 aa28.5■■■□□ 2.15
VARS-217ENST00000440048 STAP2Q9UGK3 403 aa28.5■■■□□ 2.15
VARS-217ENST00000440048 SERPINB13Q9UIV8 391 aa28.5■■■□□ 2.15
VARS-217ENST00000440048 BAZ2AQ9UIF9 1905 aaKnown RBP28.49■■■□□ 2.15
VARS-217ENST00000440048 RNF113AO15541 343 aaKnown RBP28.49■■■□□ 2.15
VARS-217ENST00000440048 POLR3DP05423 398 aaPredicted RBP28.49■■■□□ 2.15
VARS-217ENST00000440048 PLCD1P51178 756 aa28.49■■■□□ 2.15
VARS-217ENST00000440048 ANKRD23Q86SG2 305 aa28.49■■■□□ 2.15
VARS-217ENST00000440048 ZFYVE28Q9HCC9 887 aa28.49■■■□□ 2.15
VARS-217ENST00000440048 A0A0G2JLL6 359 aaPredicted RBP28.48■■■□□ 2.15
VARS-217ENST00000440048 CCDC85CA6NKD9 419 aa28.48■■■□□ 2.15
VARS-217ENST00000440048 PDE1AP54750 535 aa28.48■■■□□ 2.15
VARS-217ENST00000440048 JAG1P78504 1218 aa28.48■■■□□ 2.15
VARS-217ENST00000440048 PRRT2Q7Z6L0 340 aaPredicted RBP28.48■■■□□ 2.15
VARS-217ENST00000440048 ATP8A2Q9NTI2 1148 aa28.48■■■□□ 2.15
VARS-217ENST00000440048 TRIM75PA6NK02 468 aa28.47■■■□□ 2.15
VARS-217ENST00000440048 ZFYP08048 801 aaPredicted RBP28.47■■■□□ 2.15
VARS-217ENST00000440048 PKN2Q16513 984 aaKnown RBP28.47■■■□□ 2.15
VARS-217ENST00000440048 APPBP2Q92624 585 aa28.47■■■□□ 2.15
VARS-217ENST00000440048 USP17L5A8MUK1 530 aa28.46■■■□□ 2.15
VARS-217ENST00000440048 GDF11O95390 407 aa28.46■■■□□ 2.15
VARS-217ENST00000440048 ASNSP08243 561 aa28.46■■■□□ 2.15
VARS-217ENST00000440048 NUCB1Q02818 461 aa28.46■■■□□ 2.15
VARS-217ENST00000440048 EVX2Q03828 476 aa28.46■■■□□ 2.15
VARS-217ENST00000440048 SHROOM1Q2M3G4 852 aaPredicted RBP28.46■■■□□ 2.15
VARS-217ENST00000440048 GPAT2Q6NUI2 795 aa28.46■■■□□ 2.15
VARS-217ENST00000440048 TATDN1Q6P1N9 297 aa28.46■■■□□ 2.15
VARS-217ENST00000440048 OSBP2Q969R2 916 aa28.46■■■□□ 2.15
VARS-217ENST00000440048 TBC1D2Q9BYX2 928 aa28.46■■■□□ 2.15
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms