RNA–Protein interactions for RNA: ENST00000428445.1

VARS-216, Transcript of valyl-tRNA synthetase, humanhuman

TSL 5

Gene VARS, Length 863 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-216ENST00000428445 TBC1D12O60347 775 aa20.41■□□□□ 0.86
VARS-216ENST00000428445 GNAI2P04899 355 aa20.41■□□□□ 0.86
VARS-216ENST00000428445 INHAP05111 366 aa20.41■□□□□ 0.86
VARS-216ENST00000428445 ARID4AP29374 1257 aaPredicted RBP20.41■□□□□ 0.86
VARS-216ENST00000428445 G3BP1Q13283 466 aaKnown RBP eCLIP20.41■□□□□ 0.868e-7■■■■■ 27.3
VARS-216ENST00000428445 NKX2-3Q8TAU0 364 aa20.41■□□□□ 0.86
VARS-216ENST00000428445 OSBPL5Q9H0X9 879 aaPredicted RBP20.41■□□□□ 0.86
VARS-216ENST00000428445 RBM27Q9P2N5 1060 aaKnown RBP20.41■□□□□ 0.86
VARS-216ENST00000428445 SLC45A1Q9Y2W3 748 aa20.41■□□□□ 0.86
VARS-216ENST00000428445 ATAD5Q96QE3 1844 aa20.41■□□□□ 0.86
VARS-216ENST00000428445 PEX10O60683 326 aa20.4■□□□□ 0.86
VARS-216ENST00000428445 LDHCP07864 332 aa20.4■□□□□ 0.86
VARS-216ENST00000428445 HMGCS2P54868 508 aa20.4■□□□□ 0.86
VARS-216ENST00000428445 ATF7IPQ6VMQ6 1270 aa20.4■□□□□ 0.86
VARS-216ENST00000428445 TEX11Q8IYF3 940 aa20.4■□□□□ 0.86
VARS-216ENST00000428445 LRP2BPQ9P2M1 347 aa20.4■□□□□ 0.86
VARS-216ENST00000428445 MYO5AQ9Y4I1 1855 aaKnown RBP20.4■□□□□ 0.86
VARS-216ENST00000428445 SGPL1O95470 568 aa20.39■□□□□ 0.85
VARS-216ENST00000428445 GSTO1P78417 241 aa20.39■□□□□ 0.85
VARS-216ENST00000428445 JAG1P78504 1218 aa20.39■□□□□ 0.85
VARS-216ENST00000428445 SHROOM1Q2M3G4 852 aaPredicted RBP20.39■□□□□ 0.85
VARS-216ENST00000428445 TMEM57Q8N5G2 664 aa20.39■□□□□ 0.85
VARS-216ENST00000428445 FARP2O94887 1054 aaPredicted RBP20.38■□□□□ 0.85
VARS-216ENST00000428445 TFRCP02786 760 aaKnown RBP20.38■□□□□ 0.85
VARS-216ENST00000428445 CAP2P40123 477 aa20.38■□□□□ 0.85
VARS-216ENST00000428445 ZNF280CQ8ND82 737 aa20.38■□□□□ 0.85
VARS-216ENST00000428445 DEFB118Q96PH6 123 aa20.38■□□□□ 0.85
VARS-216ENST00000428445 DBNDD2Q9BQY9 259 aa20.38■□□□□ 0.85
VARS-216ENST00000428445 C1orf115Q9H7X2 142 aa20.38■□□□□ 0.85
VARS-216ENST00000428445 AATFQ9NY61 560 aaKnown RBP eCLIP20.38■□□□□ 0.85
VARS-216ENST00000428445 SIPA1L1O43166 1804 aa20.37■□□□□ 0.85
VARS-216ENST00000428445 CCER2I3L3R5 266 aa20.37■□□□□ 0.85
VARS-216ENST00000428445 IPO8O15397 1037 aaKnown RBP20.37■□□□□ 0.85
VARS-216ENST00000428445 NPM3O75607 178 aaKnown RBP20.37■□□□□ 0.85
VARS-216ENST00000428445 ADGRA1Q86SQ6 560 aa20.37■□□□□ 0.85
VARS-216ENST00000428445 RANBP2P49792 3224 aaKnown RBP20.37■□□□□ 0.85
VARS-216ENST00000428445 IRF5Q13568 498 aa20.36■□□□□ 0.85
VARS-216ENST00000428445 MAPKAPK5Q8IW41 473 aa20.36■□□□□ 0.85
VARS-216ENST00000428445 TGFBRAP1Q8WUH2 860 aa20.36■□□□□ 0.85
VARS-216ENST00000428445 USP17L5A8MUK1 530 aa20.35■□□□□ 0.85
VARS-216ENST00000428445 CYP2E1P05181 493 aaPredicted RBP20.35■□□□□ 0.85
VARS-216ENST00000428445 UQCRFS1P1P0C7P4 283 aa20.35■□□□□ 0.85
VARS-216ENST00000428445 TRIM32Q13049 653 aa20.35■□□□□ 0.85
VARS-216ENST00000428445 TTC39AQ5SRH9 613 aa20.35■□□□□ 0.85
VARS-216ENST00000428445 NAA16Q6N069 864 aaPredicted RBP20.35■□□□□ 0.85
VARS-216ENST00000428445 PROCA1Q8NCQ7 364 aaPredicted RBP20.35■□□□□ 0.85
VARS-216ENST00000428445 PXYLP1Q8TE99 480 aa20.35■□□□□ 0.85
VARS-216ENST00000428445 COA7Q96BR5 231 aa20.35■□□□□ 0.85
VARS-216ENST00000428445 HTATIP2Q9BUP3 242 aa20.35■□□□□ 0.85
VARS-216ENST00000428445 ASCC2Q9H1I8 757 aaPredicted RBP20.35■□□□□ 0.85
VARS-216ENST00000428445 CDK5RAP2Q96SN8 1893 aa20.35■□□□□ 0.85
VARS-216ENST00000428445 LOC285556D6RIA3 1793 aa20.34■□□□□ 0.85
VARS-216ENST00000428445 FAM110CQ1W6H9 321 aa20.34■□□□□ 0.85
VARS-216ENST00000428445 TNNI3KQ59H18 835 aa20.34■□□□□ 0.85
VARS-216ENST00000428445 DIS3LQ8TF46 1054 aaKnown RBP20.34■□□□□ 0.85
VARS-216ENST00000428445 DNAJC18Q9H819 358 aa20.34■□□□□ 0.85
VARS-216ENST00000428445 SAP30BPQ9UHR5 308 aaKnown RBP20.34■□□□□ 0.85
VARS-216ENST00000428445 PNMA3Q9UL41 463 aa20.34■□□□□ 0.85
VARS-216ENST00000428445 FPGT-TNNI3KV9GXZ4 949 aa20.34■□□□□ 0.85
VARS-216ENST00000428445 DYNLL1P63167 89 aaKnown RBP20.33■□□□□ 0.85
VARS-216ENST00000428445 MTMR2Q13614 643 aa20.33■□□□□ 0.85
VARS-216ENST00000428445 POLA2Q14181 598 aa20.33■□□□□ 0.85
VARS-216ENST00000428445 PIH1D3Q9NQM4 214 aaKnown RBP20.33■□□□□ 0.85
VARS-216ENST00000428445 PAK6Q9NQU5 681 aaPredicted RBP20.33■□□□□ 0.85
VARS-216ENST00000428445 PI4KBQ9UBF8 816 aa20.33■□□□□ 0.85
VARS-216ENST00000428445 GJD2Q9UKL4 321 aa20.33■□□□□ 0.85
VARS-216ENST00000428445 PALD1Q9ULE6 856 aa20.33■□□□□ 0.85
VARS-216ENST00000428445 ZBTB7BO15156 539 aaPredicted RBP20.32■□□□□ 0.84
VARS-216ENST00000428445 SURF6O75683 361 aaKnown RBP20.32■□□□□ 0.84
VARS-216ENST00000428445 GDF11O95390 407 aa20.32■□□□□ 0.84
VARS-216ENST00000428445 MAP4K4O95819 1239 aaPredicted RBP20.32■□□□□ 0.84
VARS-216ENST00000428445 ZAP70P43403 619 aa20.32■□□□□ 0.84
VARS-216ENST00000428445 ATP8B2P98198 1209 aa20.32■□□□□ 0.84
VARS-216ENST00000428445 OS9Q13438 667 aaPredicted RBP20.32■□□□□ 0.84
VARS-216ENST00000428445 PAWRQ96IZ0 340 aaKnown RBP20.32■□□□□ 0.84
VARS-216ENST00000428445 NOL10Q9BSC4 688 aaKnown RBP20.32■□□□□ 0.84
VARS-216ENST00000428445 TLR7Q9NYK1 1049 aaKnown RBP20.32■□□□□ 0.84
VARS-216ENST00000428445 NDUFB9Q9Y6M9 179 aa20.32■□□□□ 0.84
VARS-216ENST00000428445 ALPK3Q96L96 1907 aa20.31■□□□□ 0.84
VARS-216ENST00000428445 COL2A1P02458 1487 aaPredicted RBP20.31■□□□□ 0.84
VARS-216ENST00000428445 SH3D19Q5HYK7 790 aa20.31■□□□□ 0.84
VARS-216ENST00000428445 CCDC158Q5M9N0 1113 aa20.31■□□□□ 0.84
VARS-216ENST00000428445 P2RX7Q99572 595 aaKnown RBP20.31■□□□□ 0.84
VARS-216ENST00000428445 CCDC8Q9H0W5 538 aaPredicted RBP20.31■□□□□ 0.84
VARS-216ENST00000428445 PRO3102Q9H379 93 aa20.31■□□□□ 0.84
VARS-216ENST00000428445 HERC5Q9UII4 1024 aaKnown RBP20.31■□□□□ 0.84
VARS-216ENST00000428445 PLXNB2O15031 1838 aa20.31■□□□□ 0.84
VARS-216ENST00000428445 FLT1P17948 1338 aa20.3■□□□□ 0.84
VARS-216ENST00000428445 EVI5O60447 810 aa20.3■□□□□ 0.84
VARS-216ENST00000428445 BAG3O95817 575 aa20.3■□□□□ 0.84
VARS-216ENST00000428445 GCLCP48506 637 aaPredicted RBP20.3■□□□□ 0.84
VARS-216ENST00000428445 PPP4CP60510 307 aa20.3■□□□□ 0.84
VARS-216ENST00000428445 ZKSCAN2Q63HK3 967 aa20.3■□□□□ 0.84
VARS-216ENST00000428445 SSH3Q8TE77 659 aa20.3■□□□□ 0.84
VARS-216ENST00000428445 CRISPLD2Q9H0B8 497 aa20.3■□□□□ 0.84
VARS-216ENST00000428445 XRN2Q9H0D6 950 aaKnown RBP eCLIP20.3■□□□□ 0.846e-6■■■■□ 23.6
VARS-216ENST00000428445 TXNRD2Q9NNW7 524 aa20.3■□□□□ 0.84
VARS-216ENST00000428445 NR2E3Q9Y5X4 410 aa20.3■□□□□ 0.84
VARS-216ENST00000428445 CYP2B6P20813 491 aa20.29■□□□□ 0.84
VARS-216ENST00000428445 BACE1P56817 501 aa20.29■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms