RNA–Protein interactions for RNA: ENST00000419110.5

HMGB3-202, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 3

Gene HMGB3, Length 707 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-202ENST00000419110 TEX11Q8IYF3 940 aa7.04□□□□□ -1.28
HMGB3-202ENST00000419110 IFNL3Q8IZI9 196 aa7.04□□□□□ -1.28
HMGB3-202ENST00000419110 LARGE2Q8N3Y3 721 aa7.04□□□□□ -1.28
HMGB3-202ENST00000419110 SDR42E1Q8WUS8 393 aa7.04□□□□□ -1.28
HMGB3-202ENST00000419110 C7orf43Q8WVR3 580 aa7.04□□□□□ -1.28
HMGB3-202ENST00000419110 TEKT1Q969V4 418 aa7.04□□□□□ -1.28
HMGB3-202ENST00000419110 TMX3Q96JJ7 454 aa7.04□□□□□ -1.28
HMGB3-202ENST00000419110 KRT23Q9C075 422 aa7.04□□□□□ -1.28
HMGB3-202ENST00000419110 VPS33BQ9H267 617 aa7.04□□□□□ -1.28
HMGB3-202ENST00000419110 TOMM22Q9NS69 142 aa7.04□□□□□ -1.28
HMGB3-202ENST00000419110 ATP8A2Q9NTI2 1148 aa7.04□□□□□ -1.28
HMGB3-202ENST00000419110 TTF2Q9UNY4 1162 aaKnown RBP7.04□□□□□ -1.28
HMGB3-202ENST00000419110 LIMCH1Q9UPQ0 1083 aa7.04□□□□□ -1.28
HMGB3-202ENST00000419110 RBBP6Q7Z6E9 1792 aaKnown RBP7.04□□□□□ -1.28
HMGB3-202ENST00000419110 TCHHQ07283 1943 aa7.03□□□□□ -1.28
HMGB3-202ENST00000419110 GSG1L2A8MUP6 293 aa7.03□□□□□ -1.28
HMGB3-202ENST00000419110 CPA1P15085 419 aa7.03□□□□□ -1.28
HMGB3-202ENST00000419110 IARSP41252 1262 aaKnown RBP7.03□□□□□ -1.28
HMGB3-202ENST00000419110 PTGER2P43116 358 aa7.03□□□□□ -1.28
HMGB3-202ENST00000419110 DYNLL1P63167 89 aaKnown RBP7.03□□□□□ -1.28
HMGB3-202ENST00000419110 PPARAQ07869 468 aa7.03□□□□□ -1.28
HMGB3-202ENST00000419110 AKNAD1Q5T1N1 836 aa7.03□□□□□ -1.28
HMGB3-202ENST00000419110 MFSD6Q6ZSS7 791 aa7.03□□□□□ -1.28
HMGB3-202ENST00000419110 DHX32Q7L7V1 743 aaKnown RBP7.03□□□□□ -1.28
HMGB3-202ENST00000419110 MB21D2Q8IYB1 491 aaPredicted RBP7.03□□□□□ -1.28
HMGB3-202ENST00000419110 ZNF384Q8TF68 577 aa7.03□□□□□ -1.28
HMGB3-202ENST00000419110 STAG1Q8WVM7 1258 aa7.03□□□□□ -1.28
HMGB3-202ENST00000419110 CHMP4CQ96CF2 233 aa7.03□□□□□ -1.28
HMGB3-202ENST00000419110 INTS4Q96HW7 963 aaKnown RBP7.03□□□□□ -1.28
HMGB3-202ENST00000419110 ALDH8A1Q9H2A2 487 aaPredicted RBP7.03□□□□□ -1.28
HMGB3-202ENST00000419110 CHMP5Q9NZZ3 219 aa7.03□□□□□ -1.28
HMGB3-202ENST00000419110 BCS1LQ9Y276 419 aa7.03□□□□□ -1.28
HMGB3-202ENST00000419110 KIF3AQ9Y496 699 aa7.03□□□□□ -1.28
HMGB3-202ENST00000419110 DAGLAQ9Y4D2 1042 aa7.03□□□□□ -1.28
HMGB3-202ENST00000419110 ZSCAN21Q9Y5A6 473 aaPredicted RBP7.03□□□□□ -1.28
HMGB3-202ENST00000419110 TAF6LQ9Y6J9 622 aa7.03□□□□□ -1.28
HMGB3-202ENST00000419110 FLT1P17948 1338 aa7.02□□□□□ -1.28
HMGB3-202ENST00000419110 ERICH2A1L162 156 aa7.02□□□□□ -1.29
HMGB3-202ENST00000419110 GOLGA8BA8MQT2 603 aa7.02□□□□□ -1.29
HMGB3-202ENST00000419110 MINDY4BA8MYZ0 360 aa7.02□□□□□ -1.29
HMGB3-202ENST00000419110 F8W031 263 aaPredicted RBP7.02□□□□□ -1.29
HMGB3-202ENST00000419110 PRC1O43663 620 aa7.02□□□□□ -1.29
HMGB3-202ENST00000419110 PRKAB2O43741 272 aa7.02□□□□□ -1.29
HMGB3-202ENST00000419110 SLC34A2O95436 690 aa7.02□□□□□ -1.29
HMGB3-202ENST00000419110 NUDT7P0C024 238 aa7.02□□□□□ -1.29
HMGB3-202ENST00000419110 PPP4CP60510 307 aa7.02□□□□□ -1.29
HMGB3-202ENST00000419110 HDLBPQ00341 1268 aaKnown RBP7.02□□□□□ -1.29
HMGB3-202ENST00000419110 PDE4BQ07343 736 aa7.02□□□□□ -1.29
HMGB3-202ENST00000419110 CUL4AQ13619 759 aa7.02□□□□□ -1.29
HMGB3-202ENST00000419110 RRP12Q5JTH9 1297 aaKnown RBP7.02□□□□□ -1.29
HMGB3-202ENST00000419110 DACT2Q5SW24 774 aa7.02□□□□□ -1.29
HMGB3-202ENST00000419110 HHIPL2Q6UWX4 724 aa7.02□□□□□ -1.29
HMGB3-202ENST00000419110 Q6ZUG5 572 aa7.02□□□□□ -1.29
HMGB3-202ENST00000419110 CERS5Q8N5B7 392 aa7.02□□□□□ -1.29
HMGB3-202ENST00000419110 SPRYD3Q8NCJ5 442 aa7.02□□□□□ -1.29
HMGB3-202ENST00000419110 SH3RF3Q8TEJ3 882 aaPredicted RBP7.02□□□□□ -1.29
HMGB3-202ENST00000419110 JDP2Q8WYK2 163 aa7.02□□□□□ -1.29
HMGB3-202ENST00000419110 ESR2Q92731 530 aa7.02□□□□□ -1.29
HMGB3-202ENST00000419110 BRF1Q92994 677 aa7.02□□□□□ -1.29
HMGB3-202ENST00000419110 TMEM87BQ96K49 555 aa7.02□□□□□ -1.29
HMGB3-202ENST00000419110 TCEANC2Q96MN5 208 aa7.02□□□□□ -1.29
HMGB3-202ENST00000419110 UBAC1Q9BSL1 405 aa7.02□□□□□ -1.29
HMGB3-202ENST00000419110 NBPF3Q9H094 633 aa7.02□□□□□ -1.29
HMGB3-202ENST00000419110 ZNF287Q9HBT7 754 aa7.02□□□□□ -1.29
HMGB3-202ENST00000419110 CWC22Q9HCG8 908 aaKnown RBP7.02□□□□□ -1.29
HMGB3-202ENST00000419110 DCP1AQ9NPI6 582 aaPredicted RBP7.02□□□□□ -1.29
HMGB3-202ENST00000419110 ZNF277Q9NRM2 450 aaPredicted RBP7.02□□□□□ -1.29
HMGB3-202ENST00000419110 TMOD2Q9NZR1 351 aa7.02□□□□□ -1.29
HMGB3-202ENST00000419110 ANAPC4Q9UJX5 808 aa7.02□□□□□ -1.29
HMGB3-202ENST00000419110 HDAC9Q9UKV0 1011 aa7.02□□□□□ -1.29
HMGB3-202ENST00000419110 NAP1L2Q9ULW6 460 aaPredicted RBP7.02□□□□□ -1.29
HMGB3-202ENST00000419110 OTOFQ9HC10 1997 aa7.01□□□□□ -1.29
HMGB3-202ENST00000419110 NID2Q14112 1375 aa7.01□□□□□ -1.29
HMGB3-202ENST00000419110 PLIN4Q96Q06 1357 aa7.01□□□□□ -1.29
HMGB3-202ENST00000419110 GPR75-ASB3A0A0A6YYF3 556 aa7.01□□□□□ -1.29
HMGB3-202ENST00000419110 B4E1Z4 1266 aa7.01□□□□□ -1.29
HMGB3-202ENST00000419110 HLA-DOAP06340 250 aa7.01□□□□□ -1.29
HMGB3-202ENST00000419110 KCNA3P22001 575 aa7.01□□□□□ -1.29
HMGB3-202ENST00000419110 CRKP46108 304 aa7.01□□□□□ -1.29
HMGB3-202ENST00000419110 RBM5P52756 815 aaKnown RBP eCLIP7.01□□□□□ -1.29
HMGB3-202ENST00000419110 NUCB2P80303 420 aa7.01□□□□□ -1.29
HMGB3-202ENST00000419110 CTDSPL2Q05D32 466 aa7.01□□□□□ -1.29
HMGB3-202ENST00000419110 TOB2Q14106 344 aaPredicted RBP7.01□□□□□ -1.29
HMGB3-202ENST00000419110 GRIK5Q16478 980 aa7.01□□□□□ -1.29
HMGB3-202ENST00000419110 SBK1Q52WX2 424 aa7.01□□□□□ -1.29
HMGB3-202ENST00000419110 IQCA1Q86XH1 822 aa7.01□□□□□ -1.29
HMGB3-202ENST00000419110 KIAA0825Q8IV33 1275 aa7.01□□□□□ -1.29
HMGB3-202ENST00000419110 CCDC83Q8IWF9 413 aa7.01□□□□□ -1.29
HMGB3-202ENST00000419110 HS6ST3Q8IZP7 471 aa7.01□□□□□ -1.29
HMGB3-202ENST00000419110 GTF3C6Q969F1 213 aa7.01□□□□□ -1.29
HMGB3-202ENST00000419110 MTA3Q9BTC8 594 aa7.01□□□□□ -1.29
HMGB3-202ENST00000419110 MCM9Q9NXL9 1143 aa7.01□□□□□ -1.29
HMGB3-202ENST00000419110 SERPINA10Q9UK55 444 aa7.01□□□□□ -1.29
HMGB3-202ENST00000419110 ANGEL1Q9UNK9 670 aaKnown RBP7.01□□□□□ -1.29
HMGB3-202ENST00000419110 SMC3Q9UQE7 1217 aa7.01□□□□□ -1.29
HMGB3-202ENST00000419110 PCDHGA4Q9Y5G9 962 aa7.01□□□□□ -1.29
HMGB3-202ENST00000419110 SCN4AP35499 1836 aa7.01□□□□□ -1.29
HMGB3-202ENST00000419110 KLF18A0A0U1RQI7 1052 aa7□□□□□ -1.29
HMGB3-202ENST00000419110 NFKBIEO00221 500 aa7□□□□□ -1.29
HMGB3-202ENST00000419110 SH2B2O14492 632 aaPredicted RBP7□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms