RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 PRR23CQ6ZRP0 262 aa7.13□□□□□ -1.27
VPS54-204ENST00000416400 SMYD4Q8IYR2 804 aaPredicted RBP7.13□□□□□ -1.27
VPS54-204ENST00000416400 KCT2Q8NC54 265 aa7.13□□□□□ -1.27
VPS54-204ENST00000416400 RNF214Q8ND24 703 aa7.13□□□□□ -1.27
VPS54-204ENST00000416400 GIMAP7Q8NHV1 300 aa7.13□□□□□ -1.27
VPS54-204ENST00000416400 ZNF296Q8WUU4 475 aaPredicted RBP7.13□□□□□ -1.27
VPS54-204ENST00000416400 ARMC5Q96C12 935 aa7.13□□□□□ -1.27
VPS54-204ENST00000416400 DISC1Q9NRI5 854 aa7.13□□□□□ -1.27
VPS54-204ENST00000416400 FAM105AQ9NUU6 356 aa7.13□□□□□ -1.27
VPS54-204ENST00000416400 ADAMTS1Q9UHI8 967 aa7.13□□□□□ -1.27
VPS54-204ENST00000416400 PCOLCE2Q9UKZ9 415 aa7.13□□□□□ -1.27
VPS54-204ENST00000416400 DAGLAQ9Y4D2 1042 aa7.13□□□□□ -1.27
VPS54-204ENST00000416400 ROBO2Q9HCK4 1378 aa7.12□□□□□ -1.27
VPS54-204ENST00000416400 FANCGO15287 622 aa7.12□□□□□ -1.27
VPS54-204ENST00000416400 F13A1P00488 732 aa7.12□□□□□ -1.27
VPS54-204ENST00000416400 NFICP08651 508 aa7.12□□□□□ -1.27
VPS54-204ENST00000416400 GTF2F1P35269 517 aaKnown RBP eCLIP7.12□□□□□ -1.27
VPS54-204ENST00000416400 PDE4BQ07343 736 aa7.12□□□□□ -1.27
VPS54-204ENST00000416400 INPP5AQ14642 412 aa7.12□□□□□ -1.27
VPS54-204ENST00000416400 CWF19L2Q2TBE0 894 aaKnown RBP7.12□□□□□ -1.27
VPS54-204ENST00000416400 CDPF1Q6NVV7 123 aa7.12□□□□□ -1.27
VPS54-204ENST00000416400 PDZRN4Q6ZMN7 1036 aaPredicted RBP7.12□□□□□ -1.27
VPS54-204ENST00000416400 ZNF507Q8TCN5 953 aa7.12□□□□□ -1.27
VPS54-204ENST00000416400 RASGRP4Q8TDF6 673 aa7.12□□□□□ -1.27
VPS54-204ENST00000416400 FAM83CQ9BQN1 747 aa7.12□□□□□ -1.27
VPS54-204ENST00000416400 BUD13Q9BRD0 619 aaKnown RBP eCLIP7.12□□□□□ -1.272e-6■■■□□ 17.5
VPS54-204ENST00000416400 PCDHGC5Q9Y5F6 944 aa7.12□□□□□ -1.27
VPS54-204ENST00000416400 GSC2O15499 205 aa7.11□□□□□ -1.27
VPS54-204ENST00000416400 ATF4P18848 351 aaPredicted RBP7.11□□□□□ -1.27
VPS54-204ENST00000416400 MPP2Q14168 576 aa7.11□□□□□ -1.27
VPS54-204ENST00000416400 FBXL19Q6PCT2 694 aa7.11□□□□□ -1.27
VPS54-204ENST00000416400 FAM196AQ6ZSG2 479 aa7.11□□□□□ -1.27
VPS54-204ENST00000416400 PHF6Q8IWS0 365 aaKnown RBP eCLIP7.11□□□□□ -1.27
VPS54-204ENST00000416400 DHX38Q92620 1227 aaKnown RBP7.11□□□□□ -1.27
VPS54-204ENST00000416400 SPATA32Q96LK8 384 aa7.11□□□□□ -1.27
VPS54-204ENST00000416400 GSX1Q9H4S2 264 aaPredicted RBP7.11□□□□□ -1.27
VPS54-204ENST00000416400 ACSS3Q9H6R3 686 aa7.11□□□□□ -1.27
VPS54-204ENST00000416400 TACC3Q9Y6A5 838 aa7.11□□□□□ -1.27
VPS54-204ENST00000416400 TLR3O15455 904 aaKnown RBP7.1□□□□□ -1.27
VPS54-204ENST00000416400 CILPO75339 1184 aa7.1□□□□□ -1.27
VPS54-204ENST00000416400 FGRP09769 529 aa7.1□□□□□ -1.27
VPS54-204ENST00000416400 FURINP09958 794 aa7.1□□□□□ -1.27
VPS54-204ENST00000416400 APOBRQ0VD83 1088 aa7.1□□□□□ -1.27
VPS54-204ENST00000416400 MLECQ14165 292 aa7.1□□□□□ -1.27
VPS54-204ENST00000416400 CYFIP1Q7L576 1253 aa7.1□□□□□ -1.27
VPS54-204ENST00000416400 MCF2L2Q86YR7 1114 aa7.1□□□□□ -1.27
VPS54-204ENST00000416400 EZH1Q92800 747 aaPredicted RBP7.1□□□□□ -1.27
VPS54-204ENST00000416400 DNAJC2Q99543 621 aaKnown RBP7.1□□□□□ -1.27
VPS54-204ENST00000416400 C7orf69Q9H7B7 122 aa7.1□□□□□ -1.27
VPS54-204ENST00000416400 LGR6Q9HBX8 967 aa7.1□□□□□ -1.27
VPS54-204ENST00000416400 KCNQ5Q9NR82 932 aa7.1□□□□□ -1.27
VPS54-204ENST00000416400 HMX2A2RU54 273 aa7.09□□□□□ -1.27
VPS54-204ENST00000416400 FAM221AA4D161 298 aa7.09□□□□□ -1.27
VPS54-204ENST00000416400 GRK4P32298 578 aa7.09□□□□□ -1.27
VPS54-204ENST00000416400 MCM4P33991 863 aa7.09□□□□□ -1.27
VPS54-204ENST00000416400 RSPO4Q2I0M5 234 aaPredicted RBP7.09□□□□□ -1.27
VPS54-204ENST00000416400 ZBTB37Q5TC79 503 aa7.09□□□□□ -1.27
VPS54-204ENST00000416400 NKD1Q969G9 470 aa7.09□□□□□ -1.27
VPS54-204ENST00000416400 ISL2Q96A47 359 aa7.09□□□□□ -1.27
VPS54-204ENST00000416400 NT5C1AQ9BXI3 368 aa7.09□□□□□ -1.27
VPS54-204ENST00000416400 WNT10AQ9GZT5 417 aa7.09□□□□□ -1.27
VPS54-204ENST00000416400 SEMA6CQ9H3T2 930 aa7.09□□□□□ -1.27
VPS54-204ENST00000416400 SEMA6BQ9H3T3 888 aa7.09□□□□□ -1.27
VPS54-204ENST00000416400 DYRK3O43781 588 aa7.08□□□□□ -1.28
VPS54-204ENST00000416400 STK10O94804 968 aaKnown RBP7.08□□□□□ -1.28
VPS54-204ENST00000416400 PGRP06401 933 aa7.08□□□□□ -1.28
VPS54-204ENST00000416400 CDK8P49336 464 aa7.08□□□□□ -1.28
VPS54-204ENST00000416400 NKAPLQ5M9Q1 402 aa7.08□□□□□ -1.28
VPS54-204ENST00000416400 RNF43Q68DV7 783 aa7.08□□□□□ -1.28
VPS54-204ENST00000416400 SLC51AQ86UW1 340 aa7.08□□□□□ -1.28
VPS54-204ENST00000416400 HID1Q8IV36 788 aa7.08□□□□□ -1.28
VPS54-204ENST00000416400 EAF1Q96JC9 268 aaPredicted RBP7.08□□□□□ -1.28
VPS54-204ENST00000416400 SEC16BQ96JE7 1060 aa7.08□□□□□ -1.28
VPS54-204ENST00000416400 TBC1D32Q96NH3 1257 aa7.08□□□□□ -1.28
VPS54-204ENST00000416400 GFRA2O00451 464 aa7.07□□□□□ -1.28
VPS54-204ENST00000416400 GREM1O60565 184 aa7.07□□□□□ -1.28
VPS54-204ENST00000416400 PLCG1P19174 1290 aa7.07□□□□□ -1.28
VPS54-204ENST00000416400 FSTP19883 344 aa7.07□□□□□ -1.28
VPS54-204ENST00000416400 GARTP22102 1010 aa7.07□□□□□ -1.28
VPS54-204ENST00000416400 ZNF165P49910 485 aa7.07□□□□□ -1.28
VPS54-204ENST00000416400 SEZ6Q53EL9 994 aa7.07□□□□□ -1.28
VPS54-204ENST00000416400 REC114Q7Z4M0 266 aa7.07□□□□□ -1.28
VPS54-204ENST00000416400 FBXL6Q8N531 539 aa7.07□□□□□ -1.28
VPS54-204ENST00000416400 HIRIP3Q9BW71 556 aaPredicted RBP7.07□□□□□ -1.28
VPS54-204ENST00000416400 ATG3Q9NT62 314 aa7.07□□□□□ -1.28
VPS54-204ENST00000416400 UBP1Q9NZI7 540 aa7.07□□□□□ -1.28
VPS54-204ENST00000416400 IGLV1-40P01703 118 aa7.06□□□□□ -1.28
VPS54-204ENST00000416400 SSBP05455 408 aaKnown RBP eCLIP7.06□□□□□ -1.28
VPS54-204ENST00000416400 NEFMP07197 916 aa7.06□□□□□ -1.28
VPS54-204ENST00000416400 NASPP49321 788 aaPredicted RBP7.06□□□□□ -1.28
VPS54-204ENST00000416400 RING1Q06587 406 aa7.06□□□□□ -1.28
VPS54-204ENST00000416400 NFIAQ12857 509 aa7.06□□□□□ -1.28
VPS54-204ENST00000416400 COL9A2Q14055 689 aaPredicted RBP7.06□□□□□ -1.28
VPS54-204ENST00000416400 DPH6Q7L8W6 267 aa7.06□□□□□ -1.28
VPS54-204ENST00000416400 FBXO27Q8NI29 283 aa7.06□□□□□ -1.28
VPS54-204ENST00000416400 DBNDD2Q9BQY9 259 aa7.06□□□□□ -1.28
VPS54-204ENST00000416400 EFR3BQ9Y2G0 817 aa7.06□□□□□ -1.28
VPS54-204ENST00000416400 K7ELQ4 463 aaPredicted RBP7.05□□□□□ -1.28
VPS54-204ENST00000416400 GRIN3BO60391 1043 aa7.05□□□□□ -1.28
VPS54-204ENST00000416400 CYP27A1Q02318 531 aa7.05□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms