RNA–Protein interactions for RNA: ENST00000413872.6

PHRF1-202, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-202ENST00000413872 ABCC3O15438 1527 aa19.41■□□□□ 0.7
PHRF1-202ENST00000413872 KDM2BQ8NHM5 1336 aa19.4■□□□□ 0.7
PHRF1-202ENST00000413872 AZI2Q9H6S1 392 aa19.4■□□□□ 0.7
PHRF1-202ENST00000413872 XPO5Q9HAV4 1204 aaKnown RBP eCLIP19.4■□□□□ 0.7
PHRF1-202ENST00000413872 TSPOAP1O95153 1857 aa19.4■□□□□ 0.7
PHRF1-202ENST00000413872 STAMBPO95630 424 aa19.4■□□□□ 0.7
PHRF1-202ENST00000413872 PDE6AP16499 860 aa19.4■□□□□ 0.7
PHRF1-202ENST00000413872 CHRNDQ07001 517 aa19.4■□□□□ 0.7
PHRF1-202ENST00000413872 PLIN2Q99541 437 aa19.4■□□□□ 0.7
PHRF1-202ENST00000413872 SLC5A4Q9NY91 659 aa19.4■□□□□ 0.7
PHRF1-202ENST00000413872 STRN3Q13033 797 aa19.4■□□□□ 0.7
PHRF1-202ENST00000413872 HOMER2Q9NSB8 354 aa19.4■□□□□ 0.7
PHRF1-202ENST00000413872 PKD2L1Q9P0L9 805 aa19.4■□□□□ 0.7
PHRF1-202ENST00000413872 A0A1B0GVL5 298 aa19.4■□□□□ 0.7
PHRF1-202ENST00000413872 USP17L12C9JPN9 530 aa19.4■□□□□ 0.7
PHRF1-202ENST00000413872 USP17L21D6R901 530 aa19.4■□□□□ 0.7
PHRF1-202ENST00000413872 TXKP42681 527 aa19.4■□□□□ 0.7
PHRF1-202ENST00000413872 REXO1Q8N1G1 1221 aaKnown RBP19.4■□□□□ 0.7
PHRF1-202ENST00000413872 CCDC155Q8N6L0 562 aa19.4■□□□□ 0.7
PHRF1-202ENST00000413872 CALUO43852 315 aaPredicted RBP19.39■□□□□ 0.7
PHRF1-202ENST00000413872 PDE8BO95263 885 aa19.39■□□□□ 0.7
PHRF1-202ENST00000413872 NSMFQ6X4W1 530 aa19.39■□□□□ 0.7
PHRF1-202ENST00000413872 NCOA5Q9HCD5 579 aaKnown RBP19.39■□□□□ 0.7
PHRF1-202ENST00000413872 ATP8A2Q9NTI2 1148 aa19.39■□□□□ 0.7
PHRF1-202ENST00000413872 ASAP1Q9ULH1 1129 aa19.39■□□□□ 0.7
PHRF1-202ENST00000413872 ATP2A1O14983 1001 aa19.39■□□□□ 0.69
PHRF1-202ENST00000413872 PABPC4Q13310 644 aaKnown RBP eCLIP19.39■□□□□ 0.69
PHRF1-202ENST00000413872 TRIM14Q14142 442 aa19.39■□□□□ 0.69
PHRF1-202ENST00000413872 KRT40Q6A162 431 aa19.39■□□□□ 0.69
PHRF1-202ENST00000413872 BCCIPQ9P287 314 aaKnown RBP eCLIP19.39■□□□□ 0.69
PHRF1-202ENST00000413872 MYCLP12524 364 aaPredicted RBP19.39■□□□□ 0.69
PHRF1-202ENST00000413872 EAF2Q96CJ1 260 aaPredicted RBP19.39■□□□□ 0.69
PHRF1-202ENST00000413872 BEGAINQ9BUH8 593 aa19.39■□□□□ 0.69
PHRF1-202ENST00000413872 ZNF804BA4D1E1 1349 aa19.39■□□□□ 0.69
PHRF1-202ENST00000413872 UBE3CQ15386 1083 aa19.39■□□□□ 0.69
PHRF1-202ENST00000413872 MSL1Q68DK7 614 aa19.39■□□□□ 0.69
PHRF1-202ENST00000413872 KRT27Q7Z3Y8 459 aa19.39■□□□□ 0.69
PHRF1-202ENST00000413872 CPXCR1Q8N123 301 aa19.39■□□□□ 0.69
PHRF1-202ENST00000413872 ATP10DQ9P241 1426 aa19.39■□□□□ 0.69
PHRF1-202ENST00000413872 ERVV-1B6SEH8 477 aa19.38■□□□□ 0.69
PHRF1-202ENST00000413872 CETN3O15182 167 aa19.38■□□□□ 0.69
PHRF1-202ENST00000413872 PTGS1P23219 599 aa19.38■□□□□ 0.69
PHRF1-202ENST00000413872 KIFAP3Q92845 792 aa19.38■□□□□ 0.69
PHRF1-202ENST00000413872 ZNF274Q96GC6 653 aaPredicted RBP19.38■□□□□ 0.69
PHRF1-202ENST00000413872 CCDC77Q9BR77 488 aa19.38■□□□□ 0.69
PHRF1-202ENST00000413872 DNM3Q9UQ16 869 aa19.38■□□□□ 0.69
PHRF1-202ENST00000413872 CHMP2AO43633 222 aa19.38■□□□□ 0.69
PHRF1-202ENST00000413872 GYG1P46976 350 aa19.38■□□□□ 0.69
PHRF1-202ENST00000413872 SSX2IPQ9Y2D8 614 aa19.38■□□□□ 0.69
PHRF1-202ENST00000413872 CCDC169A6NNP5 214 aa19.38■□□□□ 0.69
PHRF1-202ENST00000413872 BBOX1O75936 387 aa19.38■□□□□ 0.69
PHRF1-202ENST00000413872 IFNL3Q8IZI9 196 aa19.38■□□□□ 0.69
PHRF1-202ENST00000413872 ARID5AQ03989 594 aa19.38■□□□□ 0.69
PHRF1-202ENST00000413872 UNC5CLQ8IV45 518 aa19.38■□□□□ 0.69
PHRF1-202ENST00000413872 SNX29Q8TEQ0 813 aa19.38■□□□□ 0.69
PHRF1-202ENST00000413872 CTAGE9A4FU28 777 aa19.38■□□□□ 0.69
PHRF1-202ENST00000413872 SLC8A3P57103 927 aa19.38■□□□□ 0.69
PHRF1-202ENST00000413872 BIRC3Q13489 604 aa19.38■□□□□ 0.69
PHRF1-202ENST00000413872 ZNF654Q8IZM8 581 aa19.38■□□□□ 0.69
PHRF1-202ENST00000413872 CEP112Q8N8E3 955 aa19.38■□□□□ 0.69
PHRF1-202ENST00000413872 TET3O43151 1660 aa19.37■□□□□ 0.69
PHRF1-202ENST00000413872 EEF2P13639 858 aaKnown RBP19.37■□□□□ 0.69
PHRF1-202ENST00000413872 DCAF17Q5H9S7 520 aaPredicted RBP19.37■□□□□ 0.69
PHRF1-202ENST00000413872 CTR9Q6PD62 1173 aa19.37■□□□□ 0.69
PHRF1-202ENST00000413872 MAATS1Q7Z4T9 603 aa19.37■□□□□ 0.69
PHRF1-202ENST00000413872 NLRX1Q86UT6 975 aa19.37■□□□□ 0.69
PHRF1-202ENST00000413872 MLKLQ8NB16 471 aa19.37■□□□□ 0.69
PHRF1-202ENST00000413872 ATG3Q9NT62 314 aa19.37■□□□□ 0.69
PHRF1-202ENST00000413872 TAF12Q16514 161 aa19.37■□□□□ 0.69
PHRF1-202ENST00000413872 MICALCLQ6ZW33 695 aa19.37■□□□□ 0.69
PHRF1-202ENST00000413872 SREK1Q8WXA9 508 aaKnown RBP19.37■□□□□ 0.69
PHRF1-202ENST00000413872 ZBTB1Q9Y2K1 713 aa19.37■□□□□ 0.69
PHRF1-202ENST00000413872 PRDM15P57071 1507 aaPredicted RBP19.37■□□□□ 0.69
PHRF1-202ENST00000413872 PPM1FP49593 454 aaPredicted RBP19.37■□□□□ 0.69
PHRF1-202ENST00000413872 DNM2P50570 870 aa19.37■□□□□ 0.69
PHRF1-202ENST00000413872 GPR162Q16538 588 aa19.37■□□□□ 0.69
PHRF1-202ENST00000413872 CALCRLQ16602 461 aa19.37■□□□□ 0.69
PHRF1-202ENST00000413872 NCAPH2Q6IBW4 605 aa19.37■□□□□ 0.69
PHRF1-202ENST00000413872 CDK12Q9NYV4 1490 aaPredicted RBP19.37■□□□□ 0.69
PHRF1-202ENST00000413872 MAP3K4Q9Y6R4 1608 aa19.36■□□□□ 0.69
PHRF1-202ENST00000413872 CFBP00751 764 aa19.36■□□□□ 0.69
PHRF1-202ENST00000413872 NT5C3AQ9H0P0 336 aa19.36■□□□□ 0.69
PHRF1-202ENST00000413872 IFNKQ9P0W0 207 aa19.36■□□□□ 0.69
PHRF1-202ENST00000413872 SEC24BO95487 1268 aa19.36■□□□□ 0.69
PHRF1-202ENST00000413872 SMCR8Q8TEV9 937 aaPredicted RBP19.36■□□□□ 0.69
PHRF1-202ENST00000413872 DNAI1Q9UI46 699 aa19.36■□□□□ 0.69
PHRF1-202ENST00000413872 NDUFB9Q9Y6M9 179 aa19.36■□□□□ 0.69
PHRF1-202ENST00000413872 ZNF354CQ86Y25 554 aa19.36■□□□□ 0.69
PHRF1-202ENST00000413872 RGS22Q8NE09 1264 aa19.36■□□□□ 0.69
PHRF1-202ENST00000413872 ZSCAN10Q96SZ4 725 aaPredicted RBP19.36■□□□□ 0.69
PHRF1-202ENST00000413872 NOC4LQ9BVI4 516 aaKnown RBP19.36■□□□□ 0.69
PHRF1-202ENST00000413872 TSGA10Q9BZW7 698 aa19.36■□□□□ 0.69
PHRF1-202ENST00000413872 PRR36Q9H6K5 1346 aa19.36■□□□□ 0.69
PHRF1-202ENST00000413872 BCAMP50895 628 aa19.36■□□□□ 0.69
PHRF1-202ENST00000413872 GNPTABQ3T906 1256 aa19.36■□□□□ 0.69
PHRF1-202ENST00000413872 STX10O60499 249 aa19.35■□□□□ 0.69
PHRF1-202ENST00000413872 SNX16P57768 344 aa19.35■□□□□ 0.69
PHRF1-202ENST00000413872 GALNT17Q6IS24 598 aa19.35■□□□□ 0.69
PHRF1-202ENST00000413872 GREM2Q9H772 168 aa19.35■□□□□ 0.69
PHRF1-202ENST00000413872 PPEF1O14829 653 aaPredicted RBP19.35■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms