RNA–Protein interactions for RNA: ENST00000409766.7

USP39-204, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,033 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-204ENST00000409766 IGSF3O75054 1194 aa23.36■■□□□ 1.33
USP39-204ENST00000409766 U2AF2P26368 475 aaKnown RBP eCLIP23.36■■□□□ 1.33
USP39-204ENST00000409766 ST5P78524 1137 aa23.36■■□□□ 1.33
USP39-204ENST00000409766 TRIM29Q14134 588 aa23.36■■□□□ 1.33
USP39-204ENST00000409766 ANO1Q5XXA6 986 aa23.36■■□□□ 1.33
USP39-204ENST00000409766 NBPF11Q86T75 865 aa23.36■■□□□ 1.33
USP39-204ENST00000409766 FSIP1Q8NA03 581 aa23.36■■□□□ 1.33
USP39-204ENST00000409766 WASF1Q92558 559 aa23.36■■□□□ 1.33
USP39-204ENST00000409766 ADCY5O95622 1261 aa23.35■■□□□ 1.33
USP39-204ENST00000409766 ENAHQ8N8S7 591 aaPredicted RBP23.35■■□□□ 1.33
USP39-204ENST00000409766 WDR66Q8TBY9 1149 aa23.35■■□□□ 1.33
USP39-204ENST00000409766 MRPS27Q92552 414 aaKnown RBP23.35■■□□□ 1.33
USP39-204ENST00000409766 ZSCAN10Q96SZ4 725 aaPredicted RBP23.35■■□□□ 1.33
USP39-204ENST00000409766 SF3A1Q15459 793 aaKnown RBP23.35■■□□□ 1.33
USP39-204ENST00000409766 ANO6Q4KMQ2 910 aa23.35■■□□□ 1.33
USP39-204ENST00000409766 SASS6Q6UVJ0 657 aa23.35■■□□□ 1.33
USP39-204ENST00000409766 DZIP1Q86YF9 867 aaKnown RBP23.35■■□□□ 1.33
USP39-204ENST00000409766 CRACR2BQ8N4Y2 399 aaPredicted RBP23.35■■□□□ 1.33
USP39-204ENST00000409766 EIF2AK3Q9NZJ5 1116 aaKnown RBP23.35■■□□□ 1.33
USP39-204ENST00000409766 DDX52Q9Y2R4 599 aaKnown RBP eCLIP23.35■■□□□ 1.33
USP39-204ENST00000409766 DLEC1Q9Y238 1755 aa23.35■■□□□ 1.33
USP39-204ENST00000409766 GUCY1A2P33402 732 aa23.34■■□□□ 1.33
USP39-204ENST00000409766 TRIM22Q8IYM9 498 aa23.34■■□□□ 1.33
USP39-204ENST00000409766 FMR1NBQ8N0W7 255 aaPredicted RBP23.34■■□□□ 1.33
USP39-204ENST00000409766 KINO60870 393 aaKnown RBP23.33■■□□□ 1.33
USP39-204ENST00000409766 PRDM1O75626 825 aa23.33■■□□□ 1.33
USP39-204ENST00000409766 GPSM2P81274 684 aa23.33■■□□□ 1.33
USP39-204ENST00000409766 PPP2R5BQ15173 497 aa23.33■■□□□ 1.33
USP39-204ENST00000409766 ZNF804AQ7Z570 1209 aa23.33■■□□□ 1.33
USP39-204ENST00000409766 ORC4O43929 436 aa23.33■■□□□ 1.32
USP39-204ENST00000409766 MSNP26038 577 aaKnown RBP23.33■■□□□ 1.32
USP39-204ENST00000409766 EVX2Q03828 476 aa23.33■■□□□ 1.32
USP39-204ENST00000409766 SBK1Q52WX2 424 aa23.33■■□□□ 1.32
USP39-204ENST00000409766 NUP133Q8WUM0 1156 aa23.33■■□□□ 1.32
USP39-204ENST00000409766 GNL3Q9BVP2 549 aaKnown RBP eCLIP23.33■■□□□ 1.32
USP39-204ENST00000409766 AP5Z1O43299 807 aa23.32■■□□□ 1.32
USP39-204ENST00000409766 LDHBP07195 334 aaKnown RBP23.32■■□□□ 1.32
USP39-204ENST00000409766 DDR1Q08345 913 aa23.32■■□□□ 1.32
USP39-204ENST00000409766 SLC39A14Q15043 492 aa23.32■■□□□ 1.32
USP39-204ENST00000409766 IQCA1Q86XH1 822 aa23.32■■□□□ 1.32
USP39-204ENST00000409766 PROM2Q8N271 834 aa23.32■■□□□ 1.32
USP39-204ENST00000409766 RBM17Q96I25 401 aaKnown RBP23.32■■□□□ 1.32
USP39-204ENST00000409766 ARPP21Q9UBL0 812 aaPredicted RBP23.32■■□□□ 1.32
USP39-204ENST00000409766 DEXIO95424 95 aa23.32■■□□□ 1.32
USP39-204ENST00000409766 GNL2Q13823 731 aaKnown RBP23.32■■□□□ 1.32
USP39-204ENST00000409766 CBX8Q9HC52 389 aa23.32■■□□□ 1.32
USP39-204ENST00000409766 ZKSCAN5Q9Y2L8 839 aa23.32■■□□□ 1.32
USP39-204ENST00000409766 A0A1B0GVL5 298 aa23.31■■□□□ 1.32
USP39-204ENST00000409766 AXDND1Q5T1B0 1012 aaPredicted RBP23.31■■□□□ 1.32
USP39-204ENST00000409766 LUZP1Q86V48 1076 aa23.31■■□□□ 1.32
USP39-204ENST00000409766 CMTR1Q8N1G2 835 aaKnown RBP23.31■■□□□ 1.32
USP39-204ENST00000409766 GPR101Q96P66 508 aaPredicted RBP23.31■■□□□ 1.32
USP39-204ENST00000409766 TAOK2Q9UL54 1235 aa23.31■■□□□ 1.32
USP39-204ENST00000409766 MYH6P13533 1939 aa23.31■■□□□ 1.32
USP39-204ENST00000409766 POLRMTO00411 1230 aaKnown RBP23.3■■□□□ 1.32
USP39-204ENST00000409766 MMP1P03956 469 aa23.3■■□□□ 1.32
USP39-204ENST00000409766 HOXA10P31260 410 aaPredicted RBP23.3■■□□□ 1.32
USP39-204ENST00000409766 NDUFA8P51970 172 aa23.3■■□□□ 1.32
USP39-204ENST00000409766 TXNRD1Q16881 649 aa23.3■■□□□ 1.32
USP39-204ENST00000409766 IFIT1BQ5T764 474 aaKnown RBP23.3■■□□□ 1.32
USP39-204ENST00000409766 CCDC82Q8N4S0 544 aa23.3■■□□□ 1.32
USP39-204ENST00000409766 BBOX1O75936 387 aa23.3■■□□□ 1.32
USP39-204ENST00000409766 CAVIN2O95810 425 aa23.3■■□□□ 1.32
USP39-204ENST00000409766 ATP2B4P23634 1241 aa23.3■■□□□ 1.32
USP39-204ENST00000409766 MAP3K14Q99558 947 aa23.3■■□□□ 1.32
USP39-204ENST00000409766 MKRN1Q9UHC7 482 aaKnown RBP23.3■■□□□ 1.32
USP39-204ENST00000409766 PTMAP06454 111 aaKnown RBP23.29■■□□□ 1.32
USP39-204ENST00000409766 CYP2D6P10635 497 aa23.29■■□□□ 1.32
USP39-204ENST00000409766 PTPAQ15257 358 aa23.29■■□□□ 1.32
USP39-204ENST00000409766 KLRG2A4D1S0 409 aaPredicted RBP23.28■■□□□ 1.32
USP39-204ENST00000409766 UFL1O94874 794 aa23.28■■□□□ 1.32
USP39-204ENST00000409766 SLC3A2P08195 630 aaKnown RBP23.28■■□□□ 1.32
USP39-204ENST00000409766 TROAPQ12815 778 aa23.28■■□□□ 1.32
USP39-204ENST00000409766 GRIK5Q16478 980 aa23.28■■□□□ 1.32
USP39-204ENST00000409766 CATIPQ7Z7H3 387 aa23.28■■□□□ 1.32
USP39-204ENST00000409766 RNF26Q9BY78 433 aaPredicted RBP23.28■■□□□ 1.32
USP39-204ENST00000409766 DNAJC25Q9H1X3 360 aa23.28■■□□□ 1.32
USP39-204ENST00000409766 PPP6R2O75170 966 aa23.28■■□□□ 1.32
USP39-204ENST00000409766 WDHD1O75717 1129 aaPredicted RBP23.28■■□□□ 1.32
USP39-204ENST00000409766 CMA1P23946 247 aa23.28■■□□□ 1.32
USP39-204ENST00000409766 ZNF165P49910 485 aa23.28■■□□□ 1.32
USP39-204ENST00000409766 GSTO1P78417 241 aa23.28■■□□□ 1.32
USP39-204ENST00000409766 NOSTRINQ8IVI9 506 aa23.28■■□□□ 1.32
USP39-204ENST00000409766 CD209Q9NNX6 404 aa23.28■■□□□ 1.32
USP39-204ENST00000409766 GGA1Q9UJY5 639 aa23.28■■□□□ 1.32
USP39-204ENST00000409766 BTBD18B2RXH4 712 aa23.27■■□□□ 1.32
USP39-204ENST00000409766 PLCB2Q00722 1185 aa23.27■■□□□ 1.32
USP39-204ENST00000409766 FUT2Q10981 343 aa23.27■■□□□ 1.32
USP39-204ENST00000409766 CRAMP1Q96RY5 1269 aa23.27■■□□□ 1.32
USP39-204ENST00000409766 MCM9Q9NXL9 1143 aa23.27■■□□□ 1.32
USP39-204ENST00000409766 PODXL2Q9NZ53 605 aa23.27■■□□□ 1.32
USP39-204ENST00000409766 KCNJ14Q9UNX9 436 aa23.27■■□□□ 1.32
USP39-204ENST00000409766 CALM1P0DP23 149 aa23.26■■□□□ 1.31
USP39-204ENST00000409766 CALM2P0DP24 149 aa23.26■■□□□ 1.31
USP39-204ENST00000409766 CALM3P0DP25 149 aa23.26■■□□□ 1.31
USP39-204ENST00000409766 IL1R1P14778 569 aa23.26■■□□□ 1.31
USP39-204ENST00000409766 MARCKSP29966 332 aaPredicted RBP23.26■■□□□ 1.31
USP39-204ENST00000409766 PDE4BQ07343 736 aa23.26■■□□□ 1.31
USP39-204ENST00000409766 SAFBQ15424 915 aaKnown RBP eCLIP23.26■■□□□ 1.31
USP39-204ENST00000409766 DIS3L2Q8IYB7 885 aaKnown RBP23.26■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms