RNA–Protein interactions for RNA: ENST00000397545.8

CCDC40-204, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS P3 TSL 5 BASIC

Gene CCDC40, Length 4,294 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-204ENST00000397545 CNKSR2Q8WXI2 1034 aa12.17□□□□□ -0.46
CCDC40-204ENST00000397545 PYM1Q9BRP8 204 aaKnown RBP12.17□□□□□ -0.46
CCDC40-204ENST00000397545 V9GY48 417 aaPredicted RBP12.17□□□□□ -0.46
CCDC40-204ENST00000397545 MICALL1Q8N3F8 863 aa12.17□□□□□ -0.46
CCDC40-204ENST00000397545 GDAP1L1Q96MZ0 367 aa12.17□□□□□ -0.46
CCDC40-204ENST00000397545 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.17□□□□□ -0.46
CCDC40-204ENST00000397545 ERBB4Q15303 1308 aa12.16□□□□□ -0.46
CCDC40-204ENST00000397545 LDHCP07864 332 aa12.16□□□□□ -0.46
CCDC40-204ENST00000397545 RNASE9P60153 205 aaKnown RBP12.16□□□□□ -0.46
CCDC40-204ENST00000397545 EPHA10Q5JZY3 1008 aa12.16□□□□□ -0.46
CCDC40-204ENST00000397545 DZIP3Q86Y13 1208 aaKnown RBP12.16□□□□□ -0.46
CCDC40-204ENST00000397545 DCAF5Q96JK2 942 aa12.16□□□□□ -0.46
CCDC40-204ENST00000397545 LLPHQ9BRT6 129 aaKnown RBP12.16□□□□□ -0.46
CCDC40-204ENST00000397545 NEURL1BA8MQ27 555 aa12.16□□□□□ -0.46
CCDC40-204ENST00000397545 KRT2P35908 639 aa12.16□□□□□ -0.46
CCDC40-204ENST00000397545 PTPN21Q16825 1174 aa12.16□□□□□ -0.46
CCDC40-204ENST00000397545 ATL3Q6DD88 541 aa12.16□□□□□ -0.46
CCDC40-204ENST00000397545 NBPF5PQ86XG9 351 aaPredicted RBP12.16□□□□□ -0.46
CCDC40-204ENST00000397545 RPGRQ92834 1020 aaKnown RBP12.16□□□□□ -0.46
CCDC40-204ENST00000397545 ZDHHC9Q9Y397 364 aa12.16□□□□□ -0.46
CCDC40-204ENST00000397545 E7EWF7 191 aa12.16□□□□□ -0.46
CCDC40-204ENST00000397545 TUBB4AP04350 444 aa12.16□□□□□ -0.46
CCDC40-204ENST00000397545 ZAP70P43403 619 aa12.16□□□□□ -0.46
CCDC40-204ENST00000397545 ADKP55263 362 aaKnown RBP12.16□□□□□ -0.46
CCDC40-204ENST00000397545 APPBP2Q92624 585 aa12.16□□□□□ -0.46
CCDC40-204ENST00000397545 PSMB7Q99436 277 aa12.16□□□□□ -0.46
CCDC40-204ENST00000397545 SASH1O94885 1247 aa12.15□□□□□ -0.46
CCDC40-204ENST00000397545 ADD1P35611 737 aaKnown RBP12.15□□□□□ -0.46
CCDC40-204ENST00000397545 ZNF827Q17R98 1081 aa12.15□□□□□ -0.46
CCDC40-204ENST00000397545 CMTR1Q8N1G2 835 aaKnown RBP12.15□□□□□ -0.46
CCDC40-204ENST00000397545 PDIA6Q15084 440 aa12.15□□□□□ -0.46
CCDC40-204ENST00000397545 MICALCLQ6ZW33 695 aa12.15□□□□□ -0.46
CCDC40-204ENST00000397545 SYCP3Q8IZU3 236 aa12.15□□□□□ -0.46
CCDC40-204ENST00000397545 DESI2Q9BSY9 194 aa12.15□□□□□ -0.46
CCDC40-204ENST00000397545 ZSWIM6Q9HCJ5 1215 aa12.15□□□□□ -0.46
CCDC40-204ENST00000397545 TMOD2Q9NZR1 351 aa12.15□□□□□ -0.46
CCDC40-204ENST00000397545 TAF5LO75529 589 aa12.15□□□□□ -0.46
CCDC40-204ENST00000397545 ATP6V1AP38606 617 aa12.15□□□□□ -0.46
CCDC40-204ENST00000397545 TNNI2P48788 182 aa12.15□□□□□ -0.46
CCDC40-204ENST00000397545 KRT83P78385 493 aa12.15□□□□□ -0.46
CCDC40-204ENST00000397545 PNOCQ13519 176 aa12.15□□□□□ -0.46
CCDC40-204ENST00000397545 DTHD1Q6ZMT9 781 aa12.15□□□□□ -0.46
CCDC40-204ENST00000397545 KRBA2Q6ZNG9 492 aa12.15□□□□□ -0.46
CCDC40-204ENST00000397545 CTNND2Q9UQB3 1225 aa12.15□□□□□ -0.46
CCDC40-204ENST00000397545 TBC1D8BQ0IIM8 1120 aa12.14□□□□□ -0.47
CCDC40-204ENST00000397545 RILPL1Q5EBL4 403 aa12.14□□□□□ -0.47
CCDC40-204ENST00000397545 CNGA4Q8IV77 575 aa12.14□□□□□ -0.47
CCDC40-204ENST00000397545 FTOQ9C0B1 505 aaKnown RBP eCLIP12.14□□□□□ -0.47
CCDC40-204ENST00000397545 RGPD2P0DJD1 1756 aa12.14□□□□□ -0.47
CCDC40-204ENST00000397545 TLDC2A0PJX2 215 aa12.14□□□□□ -0.47
CCDC40-204ENST00000397545 ITGA6P23229 1130 aa12.14□□□□□ -0.47
CCDC40-204ENST00000397545 KRT9P35527 623 aa12.14□□□□□ -0.47
CCDC40-204ENST00000397545 CHMP4BP1P59074 171 aa12.14□□□□□ -0.47
CCDC40-204ENST00000397545 CTDSPL2Q05D32 466 aa12.14□□□□□ -0.47
CCDC40-204ENST00000397545 PICALMQ13492 652 aa12.14□□□□□ -0.47
CCDC40-204ENST00000397545 MYSM1Q5VVJ2 828 aa12.14□□□□□ -0.47
CCDC40-204ENST00000397545 KAZALD1Q96I82 304 aa12.14□□□□□ -0.47
CCDC40-204ENST00000397545 UIMC1Q96RL1 719 aa12.14□□□□□ -0.47
CCDC40-204ENST00000397545 LSG1Q9H089 658 aaKnown RBP12.14□□□□□ -0.47
CCDC40-204ENST00000397545 CHD2O14647 1828 aaKnown RBP12.14□□□□□ -0.47
CCDC40-204ENST00000397545 SMIM23A6NLE4 172 aa12.14□□□□□ -0.47
CCDC40-204ENST00000397545 GBP2P32456 591 aaPredicted RBP12.14□□□□□ -0.47
CCDC40-204ENST00000397545 CETN2P41208 172 aa12.14□□□□□ -0.47
CCDC40-204ENST00000397545 KIAA1468Q9P260 1216 aa12.14□□□□□ -0.47
CCDC40-204ENST00000397545 IVLP07476 585 aa12.14□□□□□ -0.47
CCDC40-204ENST00000397545 NLRP12P59046 1061 aa12.14□□□□□ -0.47
CCDC40-204ENST00000397545 LETM2Q2VYF4 491 aa12.14□□□□□ -0.47
CCDC40-204ENST00000397545 PAF1Q8N7H5 531 aa12.14□□□□□ -0.47
CCDC40-204ENST00000397545 PLBD2Q8NHP8 589 aa12.14□□□□□ -0.47
CCDC40-204ENST00000397545 TAB2Q9NYJ8 693 aa12.14□□□□□ -0.47
CCDC40-204ENST00000397545 SAMM50Q9Y512 469 aa12.14□□□□□ -0.47
CCDC40-204ENST00000397545 EBAG9O00559 213 aa12.13□□□□□ -0.47
CCDC40-204ENST00000397545 KIAA0753Q2KHM9 967 aa12.13□□□□□ -0.47
CCDC40-204ENST00000397545 PIK3AP1Q6ZUJ8 805 aa12.13□□□□□ -0.47
CCDC40-204ENST00000397545 PXDNLA1KZ92 1463 aa12.13□□□□□ -0.47
CCDC40-204ENST00000397545 LARGE1O95461 756 aa12.13□□□□□ -0.47
CCDC40-204ENST00000397545 CUL5Q93034 780 aa12.13□□□□□ -0.47
CCDC40-204ENST00000397545 ATP5JP18859 108 aa12.13□□□□□ -0.47
CCDC40-204ENST00000397545 EEF2KMTQ96G04 330 aa12.13□□□□□ -0.47
CCDC40-204ENST00000397545 SLF1Q9BQI6 1058 aa12.13□□□□□ -0.47
CCDC40-204ENST00000397545 FAM170AA1A519 330 aa12.12□□□□□ -0.47
CCDC40-204ENST00000397545 CALML3P27482 149 aa12.12□□□□□ -0.47
CCDC40-204ENST00000397545 SMC1AQ14683 1233 aaKnown RBP12.12□□□□□ -0.47
CCDC40-204ENST00000397545 TTLL7Q6ZT98 887 aa12.12□□□□□ -0.47
CCDC40-204ENST00000397545 NLRP3Q96P20 1036 aa12.12□□□□□ -0.47
CCDC40-204ENST00000397545 USP21Q9UK80 565 aa12.12□□□□□ -0.47
CCDC40-204ENST00000397545 FAM208AQ9UK61 1670 aaKnown RBP12.12□□□□□ -0.47
CCDC40-204ENST00000397545 ARHGAP6O43182 974 aa12.12□□□□□ -0.47
CCDC40-204ENST00000397545 TBCAO75347 108 aaKnown RBP12.12□□□□□ -0.47
CCDC40-204ENST00000397545 CETN1Q12798 172 aa12.12□□□□□ -0.47
CCDC40-204ENST00000397545 HDXQ7Z353 690 aa12.12□□□□□ -0.47
CCDC40-204ENST00000397545 PLEKHA4Q9H4M7 779 aa12.12□□□□□ -0.47
CCDC40-204ENST00000397545 PFKFB1P16118 471 aa12.12□□□□□ -0.47
CCDC40-204ENST00000397545 GNAQP50148 359 aa12.12□□□□□ -0.47
CCDC40-204ENST00000397545 PLCD3Q8N3E9 789 aa12.12□□□□□ -0.47
CCDC40-204ENST00000397545 CACTINQ8WUQ7 758 aaKnown RBP12.12□□□□□ -0.47
CCDC40-204ENST00000397545 HINFPQ9BQA5 517 aa12.12□□□□□ -0.47
CCDC40-204ENST00000397545 NCAPD2Q15021 1401 aa12.12□□□□□ -0.47
CCDC40-204ENST00000397545 IL2RBP14784 551 aa12.11□□□□□ -0.47
CCDC40-204ENST00000397545 WWC2Q6AWC2 1192 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms