RNA–Protein interactions for RNA: ENST00000370576.8

MCF2-203, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene MCF2, Length 3,688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-203ENST00000370576 NUTM2FA1L443 756 aa4.71□□□□□ -1.66
MCF2-203ENST00000370576 ORC4O43929 436 aa4.71□□□□□ -1.66
MCF2-203ENST00000370576 USP2O75604 605 aaPredicted RBP4.71□□□□□ -1.66
MCF2-203ENST00000370576 BCAR3O75815 825 aa4.71□□□□□ -1.66
MCF2-203ENST00000370576 NCAM1P13591 858 aa4.71□□□□□ -1.66
MCF2-203ENST00000370576 ENPP1P22413 925 aa4.71□□□□□ -1.66
MCF2-203ENST00000370576 MAPK1P28482 360 aa4.71□□□□□ -1.66
MCF2-203ENST00000370576 PMLP29590 882 aa4.71□□□□□ -1.66
MCF2-203ENST00000370576 ECE1P42892 770 aa4.71□□□□□ -1.66
MCF2-203ENST00000370576 ZNF132P52740 706 aa4.71□□□□□ -1.66
MCF2-203ENST00000370576 SULT6B1Q6IMI4 303 aa4.71□□□□□ -1.66
MCF2-203ENST00000370576 TTC30AQ86WT1 665 aa4.71□□□□□ -1.66
MCF2-203ENST00000370576 TCEAL8Q8IYN2 117 aa4.71□□□□□ -1.66
MCF2-203ENST00000370576 TSPYL6Q8N831 410 aa4.71□□□□□ -1.66
MCF2-203ENST00000370576 ABTB2Q8N961 1025 aa4.71□□□□□ -1.66
MCF2-203ENST00000370576 EPS8L1Q8TE68 723 aa4.71□□□□□ -1.66
MCF2-203ENST00000370576 SH3TC2Q8TF17 1288 aa4.71□□□□□ -1.66
MCF2-203ENST00000370576 ALKBH8Q96BT7 664 aaKnown RBP4.71□□□□□ -1.66
MCF2-203ENST00000370576 GJD2Q9UKL4 321 aa4.71□□□□□ -1.66
MCF2-203ENST00000370576 IRS2Q9Y4H2 1338 aa4.71□□□□□ -1.66
MCF2-203ENST00000370576 PARP14Q460N5 1801 aa4.7□□□□□ -1.66
MCF2-203ENST00000370576 PRPF40AO75400 957 aaKnown RBP4.7□□□□□ -1.66
MCF2-203ENST00000370576 U2AF1L5P0DN76 240 aaPredicted RBP4.7□□□□□ -1.66
MCF2-203ENST00000370576 CASP2P42575 452 aa4.7□□□□□ -1.66
MCF2-203ENST00000370576 TRAPPC10P48553 1259 aa4.7□□□□□ -1.66
MCF2-203ENST00000370576 PSMC1P62191 440 aaKnown RBP4.7□□□□□ -1.66
MCF2-203ENST00000370576 U2AF1Q01081 240 aaKnown RBP eCLIP4.7□□□□□ -1.66
MCF2-203ENST00000370576 DSG2Q14126 1118 aa4.7□□□□□ -1.66
MCF2-203ENST00000370576 TAF11Q15544 211 aa4.7□□□□□ -1.66
MCF2-203ENST00000370576 SLF2Q8IX21 1173 aa4.7□□□□□ -1.66
MCF2-203ENST00000370576 LMNTD2Q8IXW0 634 aa4.7□□□□□ -1.66
MCF2-203ENST00000370576 PHTF2Q8N3S3 785 aa4.7□□□□□ -1.66
MCF2-203ENST00000370576 ZNF579Q8NAF0 562 aaKnown RBP4.7□□□□□ -1.66
MCF2-203ENST00000370576 MRFAP1L1Q96HT8 127 aa4.7□□□□□ -1.66
MCF2-203ENST00000370576 ZNF496Q96IT1 587 aaPredicted RBP4.7□□□□□ -1.66
MCF2-203ENST00000370576 CRBNQ96SW2 442 aa4.7□□□□□ -1.66
MCF2-203ENST00000370576 DCTPP1Q9H773 170 aa4.7□□□□□ -1.66
MCF2-203ENST00000370576 CD248Q9HCU0 757 aa4.7□□□□□ -1.66
MCF2-203ENST00000370576 CXXC1Q9P0U4 656 aaPredicted RBP4.7□□□□□ -1.66
MCF2-203ENST00000370576 SIRPGQ9P1W8 387 aa4.7□□□□□ -1.66
MCF2-203ENST00000370576 DNMT3AQ9Y6K1 912 aaPredicted RBP4.7□□□□□ -1.66
MCF2-203ENST00000370576 FAM83GA6ND36 823 aa4.7□□□□□ -1.66
MCF2-203ENST00000370576 KIF3CO14782 793 aa4.7□□□□□ -1.66
MCF2-203ENST00000370576 ALDH1L1O75891 902 aa4.7□□□□□ -1.66
MCF2-203ENST00000370576 FBLN1P23142 703 aa4.7□□□□□ -1.66
MCF2-203ENST00000370576 HOXD10P28358 340 aa4.7□□□□□ -1.66
MCF2-203ENST00000370576 HSPA1LP34931 641 aa4.7□□□□□ -1.66
MCF2-203ENST00000370576 DCTN1Q14203 1278 aa4.7□□□□□ -1.66
MCF2-203ENST00000370576 TSHZ3Q63HK5 1081 aa4.7□□□□□ -1.66
MCF2-203ENST00000370576 CFAP161Q6P656 301 aa4.7□□□□□ -1.66
MCF2-203ENST00000370576 NKAPQ8N5F7 415 aaKnown RBP4.7□□□□□ -1.66
MCF2-203ENST00000370576 ANKRD44Q8N8A2 993 aa4.7□□□□□ -1.66
MCF2-203ENST00000370576 ZNF513Q8N8E2 541 aaPredicted RBP4.7□□□□□ -1.66
MCF2-203ENST00000370576 EXOC6Q8TAG9 804 aa4.7□□□□□ -1.66
MCF2-203ENST00000370576 PCDHB15Q9Y5E8 787 aa4.7□□□□□ -1.66
MCF2-203ENST00000370576 A0A1B0GVC2 190 aa4.7□□□□□ -1.66
MCF2-203ENST00000370576 FAM221AA4D161 298 aa4.7□□□□□ -1.66
MCF2-203ENST00000370576 MYL1P05976 194 aa4.7□□□□□ -1.66
MCF2-203ENST00000370576 HSP90AB1P08238 724 aaKnown RBP4.7□□□□□ -1.66
MCF2-203ENST00000370576 TERF1P54274 439 aa4.7□□□□□ -1.66
MCF2-203ENST00000370576 BEND3Q5T5X7 828 aa4.7□□□□□ -1.66
MCF2-203ENST00000370576 ARMC3Q5W041 872 aa4.7□□□□□ -1.66
MCF2-203ENST00000370576 TEX19Q8NA77 164 aa4.7□□□□□ -1.66
MCF2-203ENST00000370576 JARID2Q92833 1246 aaPredicted RBP4.7□□□□□ -1.66
MCF2-203ENST00000370576 NAP1L4Q99733 375 aaKnown RBP4.7□□□□□ -1.66
MCF2-203ENST00000370576 ASPSCR1Q9BZE9 553 aa4.7□□□□□ -1.66
MCF2-203ENST00000370576 DDX19BQ9UMR2 479 aa4.7□□□□□ -1.66
MCF2-203ENST00000370576 EYA4O95677 639 aa4.69□□□□□ -1.66
MCF2-203ENST00000370576 ATF3P18847 181 aa4.69□□□□□ -1.66
MCF2-203ENST00000370576 DNAJA1P31689 397 aaKnown RBP4.69□□□□□ -1.66
MCF2-203ENST00000370576 TTF1Q15361 905 aaPredicted RBP4.69□□□□□ -1.66
MCF2-203ENST00000370576 HSP90AB3PQ58FF7 597 aa4.69□□□□□ -1.66
MCF2-203ENST00000370576 ESCO1Q5FWF5 840 aa4.69□□□□□ -1.66
MCF2-203ENST00000370576 KIAA0319Q5VV43 1072 aa4.69□□□□□ -1.66
MCF2-203ENST00000370576 MZT2AQ6P582 158 aa4.69□□□□□ -1.66
MCF2-203ENST00000370576 GOLGA6L2Q8N9W4 650 aaPredicted RBP4.69□□□□□ -1.66
MCF2-203ENST00000370576 FAM174AQ8TBP5 190 aa4.69□□□□□ -1.66
MCF2-203ENST00000370576 SSH3Q8TE77 659 aa4.69□□□□□ -1.66
MCF2-203ENST00000370576 LRRC59Q96AG4 307 aaKnown RBP4.69□□□□□ -1.66
MCF2-203ENST00000370576 RTFDC1Q9BY42 306 aaPredicted RBP4.69□□□□□ -1.66
MCF2-203ENST00000370576 SUN2Q9UH99 717 aa4.69□□□□□ -1.66
MCF2-203ENST00000370576 ZNF112Q9UJU3 913 aa4.69□□□□□ -1.66
MCF2-203ENST00000370576 CDHR2Q9BYE9 1310 aa4.69□□□□□ -1.66
MCF2-203ENST00000370576 NAV1Q8NEY1 1877 aa4.69□□□□□ -1.66
MCF2-203ENST00000370576 ESYT3A0FGR9 886 aa4.69□□□□□ -1.66
MCF2-203ENST00000370576 TRIM64CA6NLI5 447 aa4.69□□□□□ -1.66
MCF2-203ENST00000370576 ZNF280AP59817 542 aaPredicted RBP4.69□□□□□ -1.66
MCF2-203ENST00000370576 ROR1Q01973 937 aa4.69□□□□□ -1.66
MCF2-203ENST00000370576 NFX1Q12986 1120 aaKnown RBP4.69□□□□□ -1.66
MCF2-203ENST00000370576 PSMD2Q13200 908 aa4.69□□□□□ -1.66
MCF2-203ENST00000370576 PLEKHO1Q53GL0 409 aaPredicted RBP4.69□□□□□ -1.66
MCF2-203ENST00000370576 CCBE1Q6UXH8 406 aaPredicted RBP4.69□□□□□ -1.66
MCF2-203ENST00000370576 RPAINQ86UA6 219 aa4.69□□□□□ -1.66
MCF2-203ENST00000370576 FERMT3Q86UX7 667 aa4.69□□□□□ -1.66
MCF2-203ENST00000370576 SKAP1Q86WV1 359 aa4.69□□□□□ -1.66
MCF2-203ENST00000370576 MYRIPQ8NFW9 859 aa4.69□□□□□ -1.66
MCF2-203ENST00000370576 STRBPQ96SI9 672 aaKnown RBP4.69□□□□□ -1.66
MCF2-203ENST00000370576 PRKD2Q9BZL6 878 aa4.69□□□□□ -1.66
MCF2-203ENST00000370576 API5Q9BZZ5 524 aaKnown RBP4.69□□□□□ -1.66
MCF2-203ENST00000370576 RIC8AQ9NPQ8 531 aa4.69□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms