RNA–Protein interactions for RNA: ENST00000368979.6

SNX3-203, Transcript of sorting nexin 3, humanhuman

TSL 2

Gene SNX3, Length 1,537 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3-203ENST00000368979 FZD9O00144 591 aa28.1■■■□□ 2.09
SNX3-203ENST00000368979 PRDM1O75626 825 aa28.1■■■□□ 2.09
SNX3-203ENST00000368979 PDIA3P30101 505 aaKnown RBP28.1■■■□□ 2.09
SNX3-203ENST00000368979 STK3Q13188 491 aa28.1■■■□□ 2.09
SNX3-203ENST00000368979 TNIP1Q15025 636 aa28.1■■■□□ 2.09
SNX3-203ENST00000368979 IDI2Q9BXS1 227 aa28.1■■■□□ 2.09
SNX3-203ENST00000368979 OSBPL5Q9H0X9 879 aaPredicted RBP28.1■■■□□ 2.09
SNX3-203ENST00000368979 LY9Q9HBG7 655 aa28.1■■■□□ 2.09
SNX3-203ENST00000368979 BRPF3Q9ULD4 1205 aa28.1■■■□□ 2.09
SNX3-203ENST00000368979 LIFRP42702 1097 aa28.09■■■□□ 2.09
SNX3-203ENST00000368979 TMEM67Q5HYA8 995 aa28.09■■■□□ 2.09
SNX3-203ENST00000368979 SGMS1Q86VZ5 419 aa28.09■■■□□ 2.09
SNX3-203ENST00000368979 DYNLL2Q96FJ2 89 aa28.09■■■□□ 2.09
SNX3-203ENST00000368979 KLF18A0A0U1RQI7 1052 aa28.08■■■□□ 2.09
SNX3-203ENST00000368979 IFIT3O14879 490 aaKnown RBP28.08■■■□□ 2.09
SNX3-203ENST00000368979 NPM3O75607 178 aaKnown RBP28.08■■■□□ 2.09
SNX3-203ENST00000368979 SCRN1Q12765 414 aa28.08■■■□□ 2.09
SNX3-203ENST00000368979 NFIAQ12857 509 aa28.08■■■□□ 2.09
SNX3-203ENST00000368979 OGFOD1Q8N543 542 aa28.08■■■□□ 2.09
SNX3-203ENST00000368979 DICER1Q9UPY3 1922 aaKnown RBP28.08■■■□□ 2.08
SNX3-203ENST00000368979 RANBP6O60518 1105 aaKnown RBP28.08■■■□□ 2.08
SNX3-203ENST00000368979 SART3Q15020 963 aaKnown RBP28.08■■■□□ 2.08
SNX3-203ENST00000368979 C16orf86Q6ZW13 317 aa28.08■■■□□ 2.08
SNX3-203ENST00000368979 PRMT6Q96LA8 375 aaPredicted RBP28.08■■■□□ 2.08
SNX3-203ENST00000368979 GOLGB1Q14789 3259 aaKnown RBP28.07■■■□□ 2.08
SNX3-203ENST00000368979 SPDYE2BA6NHP3 402 aa28.07■■■□□ 2.08
SNX3-203ENST00000368979 SPDYE6P0CI01 402 aa28.07■■■□□ 2.08
SNX3-203ENST00000368979 ARHGAP27Q6ZUM4 889 aa28.07■■■□□ 2.08
SNX3-203ENST00000368979 MTMR14Q8NCE2 650 aa28.07■■■□□ 2.08
SNX3-203ENST00000368979 ZKSCAN3Q9BRR0 538 aa28.07■■■□□ 2.08
SNX3-203ENST00000368979 SENP2Q9HC62 589 aa28.07■■■□□ 2.08
SNX3-203ENST00000368979 SMC3Q9UQE7 1217 aa28.07■■■□□ 2.08
SNX3-203ENST00000368979 RPS12P25398 132 aaKnown RBP28.06■■■□□ 2.08
SNX3-203ENST00000368979 TTC6Q86TZ1 520 aa28.06■■■□□ 2.08
SNX3-203ENST00000368979 UBAC1Q9BSL1 405 aa28.06■■■□□ 2.08
SNX3-203ENST00000368979 FAM198AQ9UFP1 575 aa28.06■■■□□ 2.08
SNX3-203ENST00000368979 EIF6P56537 245 aaKnown RBP28.05■■■□□ 2.08
SNX3-203ENST00000368979 RAB3GAP1Q15042 981 aa28.05■■■□□ 2.08
SNX3-203ENST00000368979 SEC23AQ15436 765 aa28.05■■■□□ 2.08
SNX3-203ENST00000368979 TDRD3Q9H7E2 651 aaKnown RBP28.05■■■□□ 2.08
SNX3-203ENST00000368979 HPS5Q9UPZ3 1129 aa28.05■■■□□ 2.08
SNX3-203ENST00000368979 TNKSO95271 1327 aa28.05■■■□□ 2.08
SNX3-203ENST00000368979 ERICH2A1L162 156 aa28.04■■■□□ 2.08
SNX3-203ENST00000368979 GOLGA8BA8MQT2 603 aa28.04■■■□□ 2.08
SNX3-203ENST00000368979 MMP14P50281 582 aa28.04■■■□□ 2.08
SNX3-203ENST00000368979 CACNB3P54284 484 aa28.04■■■□□ 2.08
SNX3-203ENST00000368979 NUCB2P80303 420 aa28.04■■■□□ 2.08
SNX3-203ENST00000368979 WTAPQ15007 396 aa28.04■■■□□ 2.08
SNX3-203ENST00000368979 DLGAP5Q15398 846 aa28.04■■■□□ 2.08
SNX3-203ENST00000368979 IQCA1Q86XH1 822 aa28.04■■■□□ 2.08
SNX3-203ENST00000368979 SLC44A5Q8NCS7 719 aa28.04■■■□□ 2.08
SNX3-203ENST00000368979 ZSCAN10Q96SZ4 725 aaPredicted RBP28.04■■■□□ 2.08
SNX3-203ENST00000368979 ZNF287Q9HBT7 754 aa28.04■■■□□ 2.08
SNX3-203ENST00000368979 NAP1L2Q9ULW6 460 aaPredicted RBP28.04■■■□□ 2.08
SNX3-203ENST00000368979 SBF1O95248 1867 aa28.03■■■□□ 2.08
SNX3-203ENST00000368979 COL2A1P02458 1487 aaPredicted RBP28.03■■■□□ 2.08
SNX3-203ENST00000368979 LMNB1P20700 586 aa28.03■■■□□ 2.08
SNX3-203ENST00000368979 GJB2P29033 226 aa28.03■■■□□ 2.08
SNX3-203ENST00000368979 CDK8P49336 464 aa28.03■■■□□ 2.08
SNX3-203ENST00000368979 GABPAQ06546 454 aa28.03■■■□□ 2.08
SNX3-203ENST00000368979 APOA5Q6Q788 366 aa28.03■■■□□ 2.08
SNX3-203ENST00000368979 ZBED3Q96IU2 234 aaPredicted RBP28.03■■■□□ 2.08
SNX3-203ENST00000368979 SIPA1L1O43166 1804 aa28.03■■■□□ 2.08
SNX3-203ENST00000368979 FAM47AQ5JRC9 791 aa28.02■■■□□ 2.08
SNX3-203ENST00000368979 TMTC2Q8N394 836 aa28.02■■■□□ 2.08
SNX3-203ENST00000368979 LLPHQ9BRT6 129 aaKnown RBP28.02■■■□□ 2.08
SNX3-203ENST00000368979 MKNK2Q9HBH9 465 aa28.02■■■□□ 2.08
SNX3-203ENST00000368979 NID2Q14112 1375 aa28.02■■■□□ 2.08
SNX3-203ENST00000368979 TSPY2A6NKD2 308 aa28.02■■■□□ 2.08
SNX3-203ENST00000368979 RASA1P20936 1047 aa28.02■■■□□ 2.08
SNX3-203ENST00000368979 ZNF280AP59817 542 aaPredicted RBP28.02■■■□□ 2.08
SNX3-203ENST00000368979 CCT2P78371 535 aaKnown RBP28.02■■■□□ 2.08
SNX3-203ENST00000368979 NFXL1Q6ZNB6 911 aa28.02■■■□□ 2.08
SNX3-203ENST00000368979 ZFPM1Q8IX07 1006 aa28.02■■■□□ 2.08
SNX3-203ENST00000368979 ENAHQ8N8S7 591 aaPredicted RBP28.02■■■□□ 2.08
SNX3-203ENST00000368979 CHMP4CQ96CF2 233 aa28.02■■■□□ 2.08
SNX3-203ENST00000368979 ZNF541Q9H0D2 1346 aa28.01■■■□□ 2.07
SNX3-203ENST00000368979 CCDC69A6NI79 296 aa28.01■■■□□ 2.07
SNX3-203ENST00000368979 ENTPD3O75355 529 aa28.01■■■□□ 2.07
SNX3-203ENST00000368979 YBX3P16989 372 aaKnown RBP eCLIP28.01■■■□□ 2.071e-8■■□□□ 12.1
SNX3-203ENST00000368979 PKP1Q13835 747 aa28.01■■■□□ 2.07
SNX3-203ENST00000368979 DHX36Q9H2U1 1008 aaKnown RBP28.01■■■□□ 2.07
SNX3-203ENST00000368979 NCOA5Q9HCD5 579 aaKnown RBP28.01■■■□□ 2.07
SNX3-203ENST00000368979 ATRNL1Q5VV63 1379 aa28■■■□□ 2.07
SNX3-203ENST00000368979 HLA-DOAP06340 250 aa28■■■□□ 2.07
SNX3-203ENST00000368979 SPDYE2Q495Y8 402 aa28■■■□□ 2.07
SNX3-203ENST00000368979 NSUN7Q8NE18 718 aaKnown RBP28■■■□□ 2.07
SNX3-203ENST00000368979 SMARCC2Q8TAQ2 1214 aa28■■■□□ 2.07
SNX3-203ENST00000368979 DPF2Q92785 391 aa28■■■□□ 2.07
SNX3-203ENST00000368979 EHD4Q9H223 541 aa28■■■□□ 2.07
SNX3-203ENST00000368979 CTDNEP1O95476 244 aa27.99■■■□□ 2.07
SNX3-203ENST00000368979 TFAP4Q01664 338 aa27.99■■■□□ 2.07
SNX3-203ENST00000368979 ZNF444Q8N0Y2 327 aaPredicted RBP27.99■■■□□ 2.07
SNX3-203ENST00000368979 TMOD2Q9NZR1 351 aa27.99■■■□□ 2.07
SNX3-203ENST00000368979 ZNF70Q9UC06 446 aaPredicted RBP27.99■■■□□ 2.07
SNX3-203ENST00000368979 SERPINB13Q9UIV8 391 aa27.99■■■□□ 2.07
SNX3-203ENST00000368979 SLC12A7Q9Y666 1083 aa27.99■■■□□ 2.07
SNX3-203ENST00000368979 ZBTB43O43298 467 aa27.98■■■□□ 2.07
SNX3-203ENST00000368979 DTNBO60941 627 aa27.98■■■□□ 2.07
SNX3-203ENST00000368979 GMPSP49915 693 aaPredicted RBP27.98■■■□□ 2.07
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms