RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 TTC14Q96N46 770 aa11.74□□□□□ -0.53
SYNE1-203ENST00000354674 ZNF215Q9UL58 517 aaPredicted RBP11.74□□□□□ -0.53
SYNE1-203ENST00000354674 JAG2Q9Y219 1238 aa11.74□□□□□ -0.53
SYNE1-203ENST00000354674 MORC2Q9Y6X9 1032 aaPredicted RBP11.74□□□□□ -0.53
SYNE1-203ENST00000354674 GSG1L2A8MUP6 293 aa11.73□□□□□ -0.53
SYNE1-203ENST00000354674 KRT32Q14532 448 aa11.73□□□□□ -0.53
SYNE1-203ENST00000354674 FAM163AQ96GL9 167 aaPredicted RBP11.73□□□□□ -0.53
SYNE1-203ENST00000354674 ARMT1Q9H993 441 aa11.73□□□□□ -0.53
SYNE1-203ENST00000354674 ZNF219Q9P2Y4 722 aaPredicted RBP11.73□□□□□ -0.53
SYNE1-203ENST00000354674 MAGEB6P1A0A0J9YX57 407 aa11.73□□□□□ -0.53
SYNE1-203ENST00000354674 ST18O60284 1047 aa11.73□□□□□ -0.53
SYNE1-203ENST00000354674 GSTO1P78417 241 aa11.73□□□□□ -0.53
SYNE1-203ENST00000354674 TPD52L1Q16890 204 aaPredicted RBP11.73□□□□□ -0.53
SYNE1-203ENST00000354674 DOK7Q18PE1 504 aa11.73□□□□□ -0.53
SYNE1-203ENST00000354674 DALRD3Q5D0E6 543 aaKnown RBP11.73□□□□□ -0.53
SYNE1-203ENST00000354674 ALDH8A1Q9H2A2 487 aaPredicted RBP11.73□□□□□ -0.53
SYNE1-203ENST00000354674 TRMT1Q9NXH9 659 aaKnown RBP11.73□□□□□ -0.53
SYNE1-203ENST00000354674 NEK4P51957 841 aa11.73□□□□□ -0.53
SYNE1-203ENST00000354674 MFSD14BQ5SR56 506 aa11.73□□□□□ -0.53
SYNE1-203ENST00000354674 EPB41L4AQ9HCS5 686 aaPredicted RBP11.73□□□□□ -0.53
SYNE1-203ENST00000354674 SCN9AQ15858 1988 aa11.73□□□□□ -0.53
SYNE1-203ENST00000354674 ARFGEF1Q9Y6D6 1849 aa11.72□□□□□ -0.53
SYNE1-203ENST00000354674 TIAM2Q8IVF5 1701 aa11.72□□□□□ -0.53
SYNE1-203ENST00000354674 CTIFO43310 598 aaKnown RBP11.72□□□□□ -0.53
SYNE1-203ENST00000354674 ECE2O60344 883 aa11.72□□□□□ -0.53
SYNE1-203ENST00000354674 PSMA5P28066 241 aa11.72□□□□□ -0.53
SYNE1-203ENST00000354674 PPP4CP60510 307 aa11.72□□□□□ -0.53
SYNE1-203ENST00000354674 GTF2IP78347 998 aa11.72□□□□□ -0.53
SYNE1-203ENST00000354674 RUFY3Q7L099 469 aa11.72□□□□□ -0.53
SYNE1-203ENST00000354674 DZIP1Q86YF9 867 aaKnown RBP11.72□□□□□ -0.53
SYNE1-203ENST00000354674 MIGA1Q8NAN2 632 aa11.72□□□□□ -0.53
SYNE1-203ENST00000354674 SPON1Q9HCB6 807 aa11.72□□□□□ -0.53
SYNE1-203ENST00000354674 AOC3Q16853 763 aa11.72□□□□□ -0.53
SYNE1-203ENST00000354674 TTLL5Q6EMB2 1281 aa11.72□□□□□ -0.53
SYNE1-203ENST00000354674 IFNL3Q8IZI9 196 aa11.72□□□□□ -0.53
SYNE1-203ENST00000354674 CERS5Q8N5B7 392 aa11.72□□□□□ -0.53
SYNE1-203ENST00000354674 JAKMIP1Q96N16 626 aaKnown RBP11.72□□□□□ -0.53
SYNE1-203ENST00000354674 LARP6Q9BRS8 491 aaKnown RBP11.72□□□□□ -0.53
SYNE1-203ENST00000354674 SPTLC3Q9NUV7 552 aa11.72□□□□□ -0.53
SYNE1-203ENST00000354674 COL4A5P29400 1685 aa11.72□□□□□ -0.53
SYNE1-203ENST00000354674 GAKO14976 1311 aa11.72□□□□□ -0.53
SYNE1-203ENST00000354674 NOP2P46087 812 aaKnown RBP11.71□□□□□ -0.53
SYNE1-203ENST00000354674 MCM2P49736 904 aa11.71□□□□□ -0.53
SYNE1-203ENST00000354674 STRIP1Q5VSL9 837 aa11.71□□□□□ -0.53
SYNE1-203ENST00000354674 STOX1Q6ZVD7 989 aa11.71□□□□□ -0.53
SYNE1-203ENST00000354674 DBNDD1Q9H9R9 158 aa11.71□□□□□ -0.53
SYNE1-203ENST00000354674 ZNF446Q9NWS9 450 aa11.71□□□□□ -0.53
SYNE1-203ENST00000354674 MYH2Q9UKX2 1941 aa11.71□□□□□ -0.53
SYNE1-203ENST00000354674 MROH7-TTC4A0A0A0MT08 1334 aa11.71□□□□□ -0.53
SYNE1-203ENST00000354674 MYO1CO00159 1063 aa11.71□□□□□ -0.53
SYNE1-203ENST00000354674 PRKAB2O43741 272 aa11.71□□□□□ -0.53
SYNE1-203ENST00000354674 CASTP20810 708 aaKnown RBP11.71□□□□□ -0.53
SYNE1-203ENST00000354674 DYNLL1P63167 89 aaKnown RBP11.71□□□□□ -0.53
SYNE1-203ENST00000354674 CCDC186Q7Z3E2 898 aa11.71□□□□□ -0.53
SYNE1-203ENST00000354674 UPF3BQ9BZI7 483 aaKnown RBP11.71□□□□□ -0.53
SYNE1-203ENST00000354674 NBPF3Q9H094 633 aa11.71□□□□□ -0.53
SYNE1-203ENST00000354674 GEMIN8Q9NWZ8 242 aaKnown RBP11.71□□□□□ -0.53
SYNE1-203ENST00000354674 SLC4A4Q9Y6R1 1079 aa11.71□□□□□ -0.53
SYNE1-203ENST00000354674 LDHCP07864 332 aa11.71□□□□□ -0.54
SYNE1-203ENST00000354674 IMMTQ16891 758 aaKnown RBP11.71□□□□□ -0.54
SYNE1-203ENST00000354674 GPR75-ASB3A0A0A6YYF3 556 aa11.7□□□□□ -0.54
SYNE1-203ENST00000354674 E7EWF7 191 aa11.7□□□□□ -0.54
SYNE1-203ENST00000354674 COL9A3Q14050 684 aaPredicted RBP11.7□□□□□ -0.54
SYNE1-203ENST00000354674 DACT2Q5SW24 774 aa11.7□□□□□ -0.54
SYNE1-203ENST00000354674 MRIQ9BWK5 157 aa11.7□□□□□ -0.54
SYNE1-203ENST00000354674 KCNQ5Q9NR82 932 aa11.7□□□□□ -0.54
SYNE1-203ENST00000354674 CYP46A1Q9Y6A2 500 aa11.7□□□□□ -0.54
SYNE1-203ENST00000354674 YDJCA8MPS7 323 aa11.7□□□□□ -0.54
SYNE1-203ENST00000354674 RPS6KB1P23443 525 aa11.7□□□□□ -0.54
SYNE1-203ENST00000354674 FAM43BQ6ZT52 329 aaPredicted RBP11.7□□□□□ -0.54
SYNE1-203ENST00000354674 NEK1Q96PY6 1258 aa11.7□□□□□ -0.54
SYNE1-203ENST00000354674 LTBP3Q9NS15 1303 aa11.7□□□□□ -0.54
SYNE1-203ENST00000354674 PPIP5K2O43314 1243 aa11.69□□□□□ -0.54
SYNE1-203ENST00000354674 HMGB1P09429 215 aaKnown RBP11.69□□□□□ -0.54
SYNE1-203ENST00000354674 DIXDC1Q155Q3 683 aa11.69□□□□□ -0.54
SYNE1-203ENST00000354674 SLF2Q8IX21 1173 aa11.69□□□□□ -0.54
SYNE1-203ENST00000354674 NACAP1Q9BZK3 213 aa11.69□□□□□ -0.54
SYNE1-203ENST00000354674 AATFQ9NY61 560 aaKnown RBP eCLIP11.69□□□□□ -0.54
SYNE1-203ENST00000354674 MKRN1Q9UHC7 482 aaKnown RBP11.69□□□□□ -0.54
SYNE1-203ENST00000354674 ANAPC4Q9UJX5 808 aa11.69□□□□□ -0.54
SYNE1-203ENST00000354674 CDK5RAP2Q96SN8 1893 aa11.69□□□□□ -0.54
SYNE1-203ENST00000354674 USP17L3A6NCW0 530 aa11.69□□□□□ -0.54
SYNE1-203ENST00000354674 USP17L4A6NCW7 530 aa11.69□□□□□ -0.54
SYNE1-203ENST00000354674 G3V3G9 751 aa11.69□□□□□ -0.54
SYNE1-203ENST00000354674 ZNF213O14771 459 aa11.69□□□□□ -0.54
SYNE1-203ENST00000354674 IBSPP21815 317 aaPredicted RBP11.69□□□□□ -0.54
SYNE1-203ENST00000354674 DCAF8Q5TAQ9 597 aa11.69□□□□□ -0.54
SYNE1-203ENST00000354674 ICE2Q659A1 982 aa11.69□□□□□ -0.54
SYNE1-203ENST00000354674 USP17L1Q7RTZ2 530 aa11.69□□□□□ -0.54
SYNE1-203ENST00000354674 USP48Q86UV5 1035 aa11.69□□□□□ -0.54
SYNE1-203ENST00000354674 NLGN2Q8NFZ4 835 aa11.69□□□□□ -0.54
SYNE1-203ENST00000354674 MYCBPQ99417 103 aaPredicted RBP11.69□□□□□ -0.54
SYNE1-203ENST00000354674 DDX60LQ5H9U9 1706 aaKnown RBP11.69□□□□□ -0.54
SYNE1-203ENST00000354674 FOCADQ5VW36 1801 aa11.69□□□□□ -0.54
SYNE1-203ENST00000354674 CPA1P15085 419 aa11.69□□□□□ -0.54
SYNE1-203ENST00000354674 CYP2C19P33261 490 aa11.69□□□□□ -0.54
SYNE1-203ENST00000354674 EXOSC10Q01780 885 aaKnown RBP11.69□□□□□ -0.54
SYNE1-203ENST00000354674 BLOC1S2Q6QNY1 142 aa11.69□□□□□ -0.54
SYNE1-203ENST00000354674 FBXL16Q8N461 479 aa11.69□□□□□ -0.54
SYNE1-203ENST00000354674 ATP8A2Q9NTI2 1148 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 91.4 ms