RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 TFRCP02786 760 aaKnown RBP25.59■■□□□ 1.69
TRIM28-202ENST00000341753 ATP2B1P20020 1258 aa25.59■■□□□ 1.69
TRIM28-202ENST00000341753 LONRF2Q1L5Z9 754 aa25.59■■□□□ 1.69
TRIM28-202ENST00000341753 SERTAD1Q9UHV2 236 aa25.59■■□□□ 1.69
TRIM28-202ENST00000341753 POLR2DO15514 142 aaKnown RBP25.58■■□□□ 1.69
TRIM28-202ENST00000341753 ATP8B1O43520 1251 aa25.58■■□□□ 1.69
TRIM28-202ENST00000341753 TRIM29Q14134 588 aa25.58■■□□□ 1.69
TRIM28-202ENST00000341753 MED15Q96RN5 788 aa25.58■■□□□ 1.69
TRIM28-202ENST00000341753 SLC26A6Q9BXS9 759 aa25.58■■□□□ 1.69
TRIM28-202ENST00000341753 TRIM34Q9BYJ4 488 aa25.58■■□□□ 1.69
TRIM28-202ENST00000341753 SH2B2O14492 632 aaPredicted RBP25.58■■□□□ 1.69
TRIM28-202ENST00000341753 ZFYP08048 801 aaPredicted RBP25.58■■□□□ 1.69
TRIM28-202ENST00000341753 IARSP41252 1262 aaKnown RBP25.58■■□□□ 1.69
TRIM28-202ENST00000341753 LMAN1P49257 510 aa25.58■■□□□ 1.69
TRIM28-202ENST00000341753 MDM2Q00987 491 aaPredicted RBP25.58■■□□□ 1.69
TRIM28-202ENST00000341753 SEC31BQ9NQW1 1179 aa25.58■■□□□ 1.69
TRIM28-202ENST00000341753 KDM4FA0A1W2PPD8 638 aa25.57■■□□□ 1.68
TRIM28-202ENST00000341753 POSTNQ15063 836 aa25.57■■□□□ 1.68
TRIM28-202ENST00000341753 CCDC82Q8N4S0 544 aa25.57■■□□□ 1.68
TRIM28-202ENST00000341753 RABGGTAQ92696 567 aa25.57■■□□□ 1.68
TRIM28-202ENST00000341753 TEX13AQ9BXU3 409 aaPredicted RBP25.57■■□□□ 1.68
TRIM28-202ENST00000341753 FEZ2Q9UHY8 353 aaPredicted RBP25.57■■□□□ 1.68
TRIM28-202ENST00000341753 KRI1Q8N9T8 703 aaKnown RBP25.57■■□□□ 1.68
TRIM28-202ENST00000341753 KCNJ14Q9UNX9 436 aa25.57■■□□□ 1.68
TRIM28-202ENST00000341753 UBN2Q6ZU65 1347 aa25.57■■□□□ 1.68
TRIM28-202ENST00000341753 FAM237AA0A1B0GTK4 181 aa25.57■■□□□ 1.68
TRIM28-202ENST00000341753 BTBD18B2RXH4 712 aa25.57■■□□□ 1.68
TRIM28-202ENST00000341753 MCM6Q14566 821 aa25.57■■□□□ 1.68
TRIM28-202ENST00000341753 ZSCAN26Q16670 478 aa25.57■■□□□ 1.68
TRIM28-202ENST00000341753 GREM2Q9H772 168 aa25.57■■□□□ 1.68
TRIM28-202ENST00000341753 PAPPAQ13219 1627 aa25.56■■□□□ 1.68
TRIM28-202ENST00000341753 GOLGA6L9A6NEM1 432 aa25.56■■□□□ 1.68
TRIM28-202ENST00000341753 GOLGA8AA7E2F4 631 aa25.56■■□□□ 1.68
TRIM28-202ENST00000341753 TEX33O43247 280 aa25.56■■□□□ 1.68
TRIM28-202ENST00000341753 CIAO1O76071 339 aa25.56■■□□□ 1.68
TRIM28-202ENST00000341753 ZNF18P17022 549 aa25.56■■□□□ 1.68
TRIM28-202ENST00000341753 GUCY1A2P33402 732 aa25.56■■□□□ 1.68
TRIM28-202ENST00000341753 DNAJC5Q9H3Z4 198 aa25.56■■□□□ 1.68
TRIM28-202ENST00000341753 RAI14Q9P0K7 980 aa25.56■■□□□ 1.68
TRIM28-202ENST00000341753 ZBTB1Q9Y2K1 713 aa25.56■■□□□ 1.68
TRIM28-202ENST00000341753 ABCA3Q99758 1704 aa25.56■■□□□ 1.68
TRIM28-202ENST00000341753 ZBTB43O43298 467 aa25.56■■□□□ 1.68
TRIM28-202ENST00000341753 CDKL5O76039 1030 aa25.56■■□□□ 1.68
TRIM28-202ENST00000341753 TXLNAP40222 546 aa25.56■■□□□ 1.68
TRIM28-202ENST00000341753 GPS2Q13227 327 aa25.56■■□□□ 1.68
TRIM28-202ENST00000341753 TBC1D2BQ9UPU7 963 aa25.56■■□□□ 1.68
TRIM28-202ENST00000341753 C4AP0C0L4 1744 aa25.55■■□□□ 1.68
TRIM28-202ENST00000341753 C4BP0C0L5 1744 aa25.55■■□□□ 1.68
TRIM28-202ENST00000341753 IFIT5Q13325 482 aaKnown RBP25.55■■□□□ 1.68
TRIM28-202ENST00000341753 CPLX2Q6PUV4 134 aaKnown RBP25.55■■□□□ 1.68
TRIM28-202ENST00000341753 PPIL4Q8WUA2 492 aaKnown RBP eCLIP25.55■■□□□ 1.68
TRIM28-202ENST00000341753 LCMT1Q9UIC8 334 aa25.55■■□□□ 1.68
TRIM28-202ENST00000341753 ADAM21Q9UKJ8 722 aa25.55■■□□□ 1.68
TRIM28-202ENST00000341753 SLC9C2Q5TAH2 1124 aa25.55■■□□□ 1.68
TRIM28-202ENST00000341753 SUGCTQ9HAC7 445 aa25.55■■□□□ 1.68
TRIM28-202ENST00000341753 FAM217BQ9NTX9 383 aaPredicted RBP25.55■■□□□ 1.68
TRIM28-202ENST00000341753 STARD3NLO95772 234 aa25.54■■□□□ 1.68
TRIM28-202ENST00000341753 CHMP4BP1P59074 171 aa25.54■■□□□ 1.68
TRIM28-202ENST00000341753 NTRK3Q16288 839 aa25.54■■□□□ 1.68
TRIM28-202ENST00000341753 WWC2Q6AWC2 1192 aa25.54■■□□□ 1.68
TRIM28-202ENST00000341753 KLHL10Q6JEL2 608 aa25.54■■□□□ 1.68
TRIM28-202ENST00000341753 USP49Q70CQ1 688 aa25.54■■□□□ 1.68
TRIM28-202ENST00000341753 EIF4ENIF1Q9NRA8 985 aaKnown RBP25.54■■□□□ 1.68
TRIM28-202ENST00000341753 TOB1P50616 345 aaPredicted RBP25.54■■□□□ 1.68
TRIM28-202ENST00000341753 STX17P56962 302 aa25.54■■□□□ 1.68
TRIM28-202ENST00000341753 RAD9BQ6WBX8 426 aa25.54■■□□□ 1.68
TRIM28-202ENST00000341753 CMTR1Q8N1G2 835 aaKnown RBP25.54■■□□□ 1.68
TRIM28-202ENST00000341753 IDH1O75874 414 aaKnown RBP25.53■■□□□ 1.68
TRIM28-202ENST00000341753 PCCAP05165 728 aaPredicted RBP25.53■■□□□ 1.68
TRIM28-202ENST00000341753 MCAMP43121 646 aa25.53■■□□□ 1.68
TRIM28-202ENST00000341753 ZBTB38Q8NAP3 1195 aaPredicted RBP25.53■■□□□ 1.68
TRIM28-202ENST00000341753 PDE11AQ9HCR9 933 aa25.53■■□□□ 1.68
TRIM28-202ENST00000341753 MAP3K15Q6ZN16 1313 aa25.52■■□□□ 1.68
TRIM28-202ENST00000341753 CCDC175P0C221 793 aa25.52■■□□□ 1.68
TRIM28-202ENST00000341753 ITGA6P23229 1130 aa25.52■■□□□ 1.68
TRIM28-202ENST00000341753 TMEM67Q5HYA8 995 aa25.52■■□□□ 1.68
TRIM28-202ENST00000341753 NLRP10Q86W26 655 aa25.52■■□□□ 1.68
TRIM28-202ENST00000341753 TICAM2Q86XR7 235 aa25.52■■□□□ 1.68
TRIM28-202ENST00000341753 TRIM66O15016 1216 aa25.52■■□□□ 1.68
TRIM28-202ENST00000341753 MYO1BO43795 1136 aa25.52■■□□□ 1.68
TRIM28-202ENST00000341753 CASP1P29466 404 aa25.52■■□□□ 1.68
TRIM28-202ENST00000341753 METTL24Q5JXM2 366 aa25.52■■□□□ 1.68
TRIM28-202ENST00000341753 NOSTRINQ8IVI9 506 aa25.52■■□□□ 1.68
TRIM28-202ENST00000341753 PNKPQ96T60 521 aa25.52■■□□□ 1.68
TRIM28-202ENST00000341753 COBLO75128 1261 aa25.51■■□□□ 1.67
TRIM28-202ENST00000341753 GIGYF2Q6Y7W6 1299 aaKnown RBP25.51■■□□□ 1.67
TRIM28-202ENST00000341753 LDHAL6AQ6ZMR3 332 aa25.51■■□□□ 1.67
TRIM28-202ENST00000341753 ENOX1Q8TC92 643 aaKnown RBP25.51■■□□□ 1.67
TRIM28-202ENST00000341753 ANKZF1Q9H8Y5 726 aa25.51■■□□□ 1.67
TRIM28-202ENST00000341753 VPS18Q9P253 973 aa25.51■■□□□ 1.67
TRIM28-202ENST00000341753 AKAP2Q9Y2D5 859 aa25.51■■□□□ 1.67
TRIM28-202ENST00000341753 AKR1B15C9JRZ8 316 aaPredicted RBP25.51■■□□□ 1.67
TRIM28-202ENST00000341753 N4BP1O75113 896 aaKnown RBP25.51■■□□□ 1.67
TRIM28-202ENST00000341753 RBL2Q08999 1139 aa25.51■■□□□ 1.67
TRIM28-202ENST00000341753 NR5A1Q13285 461 aa25.5■■□□□ 1.67
TRIM28-202ENST00000341753 MORC3Q14149 939 aa25.5■■□□□ 1.67
TRIM28-202ENST00000341753 NR1I3Q14994 352 aa25.5■■□□□ 1.67
TRIM28-202ENST00000341753 DIS3L2Q8IYB7 885 aaKnown RBP25.5■■□□□ 1.67
TRIM28-202ENST00000341753 HELBQ8NG08 1087 aaPredicted RBP25.5■■□□□ 1.67
TRIM28-202ENST00000341753 IGDCC4Q8TDY8 1250 aa25.5■■□□□ 1.67
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms