RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 C1orf131Q8NDD1 294 aaKnown RBP4.64□□□□□ -1.67
NEDD4-201ENST00000338963 STKLD1Q8NE28 680 aa4.64□□□□□ -1.67
NEDD4-201ENST00000338963 PPP1R14CQ8TAE6 165 aa4.64□□□□□ -1.67
NEDD4-201ENST00000338963 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP4.64□□□□□ -1.67
NEDD4-201ENST00000338963 SPATA32Q96LK8 384 aa4.64□□□□□ -1.67
NEDD4-201ENST00000338963 LNPKQ9C0E8 428 aa4.64□□□□□ -1.67
NEDD4-201ENST00000338963 ABCB6Q9NP58 842 aa4.64□□□□□ -1.67
NEDD4-201ENST00000338963 IL1RAPL1Q9NZN1 696 aa4.64□□□□□ -1.67
NEDD4-201ENST00000338963 TPCN1Q9ULQ1 816 aa4.64□□□□□ -1.67
NEDD4-201ENST00000338963 PHF24Q9UPV7 400 aa4.64□□□□□ -1.67
NEDD4-201ENST00000338963 SPECC1L-ADORA2AF8WAN1 911 aa4.64□□□□□ -1.67
NEDD4-201ENST00000338963 TACC1O75410 805 aa4.64□□□□□ -1.67
NEDD4-201ENST00000338963 SMARCA1P28370 1054 aa4.64□□□□□ -1.67
NEDD4-201ENST00000338963 ATICP31939 592 aa4.64□□□□□ -1.67
NEDD4-201ENST00000338963 CCDC153Q494R4 210 aa4.64□□□□□ -1.67
NEDD4-201ENST00000338963 LACTB2Q53H82 288 aaPredicted RBP4.64□□□□□ -1.67
NEDD4-201ENST00000338963 CROCCP2Q86T23 111 aa4.64□□□□□ -1.67
NEDD4-201ENST00000338963 ANKRD44Q8N8A2 993 aa4.64□□□□□ -1.67
NEDD4-201ENST00000338963 NSMCE1Q8WV22 266 aa4.64□□□□□ -1.67
NEDD4-201ENST00000338963 USP6NLQ92738 828 aa4.64□□□□□ -1.67
NEDD4-201ENST00000338963 MPP4Q96JB8 637 aa4.64□□□□□ -1.67
NEDD4-201ENST00000338963 IRX2Q9BZI1 471 aaPredicted RBP4.64□□□□□ -1.67
NEDD4-201ENST00000338963 C6orf203Q9P0P8 240 aaPredicted RBP4.64□□□□□ -1.67
NEDD4-201ENST00000338963 DDX20Q9UHI6 824 aaKnown RBP4.64□□□□□ -1.67
NEDD4-201ENST00000338963 DACH1Q9UI36 760 aa4.64□□□□□ -1.67
NEDD4-201ENST00000338963 SH3GLB1Q9Y371 365 aa4.64□□□□□ -1.67
NEDD4-201ENST00000338963 PARP3Q9Y6F1 533 aa4.64□□□□□ -1.67
NEDD4-201ENST00000338963 ST20-MTHFSA0A0A6YYL1 179 aa4.64□□□□□ -1.67
NEDD4-201ENST00000338963 LSM1O15116 133 aaKnown RBP4.64□□□□□ -1.67
NEDD4-201ENST00000338963 STX10O60499 249 aa4.64□□□□□ -1.67
NEDD4-201ENST00000338963 TBCAO75347 108 aaKnown RBP4.64□□□□□ -1.67
NEDD4-201ENST00000338963 WFS1O76024 890 aa4.64□□□□□ -1.67
NEDD4-201ENST00000338963 MAP3K12Q12852 859 aa4.64□□□□□ -1.67
NEDD4-201ENST00000338963 CCDC144BQ3MJ40 725 aa4.64□□□□□ -1.67
NEDD4-201ENST00000338963 NLRP9Q7RTR0 991 aa4.64□□□□□ -1.67
NEDD4-201ENST00000338963 CCDC144CPQ8IYA2 1237 aa4.64□□□□□ -1.67
NEDD4-201ENST00000338963 FUKQ8N0W3 1084 aa4.64□□□□□ -1.67
NEDD4-201ENST00000338963 TBC1D5Q92609 795 aa4.64□□□□□ -1.67
NEDD4-201ENST00000338963 ITPKCQ96DU7 683 aa4.64□□□□□ -1.67
NEDD4-201ENST00000338963 RRP36Q96EU6 259 aaKnown RBP4.64□□□□□ -1.67
NEDD4-201ENST00000338963 CATSPER2Q96P56 530 aa4.64□□□□□ -1.67
NEDD4-201ENST00000338963 OSBPL1AQ9BXW6 950 aa4.64□□□□□ -1.67
NEDD4-201ENST00000338963 AATFQ9NY61 560 aaKnown RBP eCLIP4.64□□□□□ -1.67
NEDD4-201ENST00000338963 PPP1R9AQ9ULJ8 1098 aa4.64□□□□□ -1.67
NEDD4-201ENST00000338963 NSFL1CQ9UNZ2 370 aaKnown RBP4.64□□□□□ -1.67
NEDD4-201ENST00000338963 SSX2IPQ9Y2D8 614 aa4.64□□□□□ -1.67
NEDD4-201ENST00000338963 TTLL3Q9Y4R7 772 aa4.64□□□□□ -1.67
NEDD4-201ENST00000338963 GIGYF1O75420 1035 aaPredicted RBP4.64□□□□□ -1.67
NEDD4-201ENST00000338963 KIF5AQ12840 1032 aa4.64□□□□□ -1.67
NEDD4-201ENST00000338963 CFAP157Q5JU67 520 aa4.64□□□□□ -1.67
NEDD4-201ENST00000338963 THOC7Q6I9Y2 204 aaKnown RBP4.64□□□□□ -1.67
NEDD4-201ENST00000338963 PPP4R3AQ6IN85 833 aa4.64□□□□□ -1.67
NEDD4-201ENST00000338963 UBE2Q1Q7Z7E8 422 aa4.64□□□□□ -1.67
NEDD4-201ENST00000338963 ELOA2Q8IYF1 753 aaPredicted RBP4.64□□□□□ -1.67
NEDD4-201ENST00000338963 ZGPATQ8N5A5 531 aaKnown RBP4.64□□□□□ -1.67
NEDD4-201ENST00000338963 IGSF22Q8N9C0 903 aa4.64□□□□□ -1.67
NEDD4-201ENST00000338963 IL17RAQ96F46 866 aa4.64□□□□□ -1.67
NEDD4-201ENST00000338963 ACSBG1Q96GR2 724 aa4.64□□□□□ -1.67
NEDD4-201ENST00000338963 GOLPH3LQ9H4A5 285 aa4.64□□□□□ -1.67
NEDD4-201ENST00000338963 SUCLA2Q9P2R7 463 aaPredicted RBP4.64□□□□□ -1.67
NEDD4-201ENST00000338963 LMNAP02545 664 aaKnown RBP4.64□□□□□ -1.67
NEDD4-201ENST00000338963 MYO1EQ12965 1108 aa4.64□□□□□ -1.67
NEDD4-201ENST00000338963 RCN1Q15293 331 aa4.64□□□□□ -1.67
NEDD4-201ENST00000338963 NDUFA5Q16718 116 aa4.64□□□□□ -1.67
NEDD4-201ENST00000338963 HSP90AA5PQ58FG0 334 aa4.64□□□□□ -1.67
NEDD4-201ENST00000338963 ZFYVE27Q5T4F4 411 aa4.64□□□□□ -1.67
NEDD4-201ENST00000338963 ZNF554Q86TJ5 538 aa4.64□□□□□ -1.67
NEDD4-201ENST00000338963 RASEFQ8IZ41 740 aa4.64□□□□□ -1.67
NEDD4-201ENST00000338963 CCDC51Q96ER9 411 aa4.64□□□□□ -1.67
NEDD4-201ENST00000338963 EPN3Q9H201 632 aa4.64□□□□□ -1.67
NEDD4-201ENST00000338963 NOD2Q9HC29 1040 aa4.64□□□□□ -1.67
NEDD4-201ENST00000338963 ZNF777Q9ULD5 760 aaPredicted RBP4.64□□□□□ -1.67
NEDD4-201ENST00000338963 RPL26L1Q9UNX3 145 aaKnown RBP4.64□□□□□ -1.67
NEDD4-201ENST00000338963 SH3TC1Q8TE82 1336 aa4.64□□□□□ -1.67
NEDD4-201ENST00000338963 PRDM15P57071 1507 aaPredicted RBP4.64□□□□□ -1.67
NEDD4-201ENST00000338963 MYO1FO00160 1098 aa4.64□□□□□ -1.67
NEDD4-201ENST00000338963 HIP1RO75146 1068 aa4.64□□□□□ -1.67
NEDD4-201ENST00000338963 GADD45BO75293 160 aaPredicted RBP4.64□□□□□ -1.67
NEDD4-201ENST00000338963 STAM2O75886 525 aa4.64□□□□□ -1.67
NEDD4-201ENST00000338963 TSPY4P0CV99 314 aa4.64□□□□□ -1.67
NEDD4-201ENST00000338963 TSPY10P0CW01 314 aa4.64□□□□□ -1.67
NEDD4-201ENST00000338963 KRT4P19013 534 aa4.64□□□□□ -1.67
NEDD4-201ENST00000338963 NONOQ15233 471 aaKnown RBP eCLIP4.64□□□□□ -1.67
NEDD4-201ENST00000338963 FOXR1Q6PIV2 292 aa4.64□□□□□ -1.67
NEDD4-201ENST00000338963 TMC6Q7Z403 805 aa4.64□□□□□ -1.67
NEDD4-201ENST00000338963 HOOK3Q86VS8 718 aa4.64□□□□□ -1.67
NEDD4-201ENST00000338963 CACNA2D3Q8IZS8 1091 aa4.64□□□□□ -1.67
NEDD4-201ENST00000338963 HAUS1Q96CS2 278 aa4.64□□□□□ -1.67
NEDD4-201ENST00000338963 CROTQ9UKG9 612 aa4.64□□□□□ -1.67
NEDD4-201ENST00000338963 TCOF1Q13428 1488 aaKnown RBP4.63□□□□□ -1.67
NEDD4-201ENST00000338963 CTAGE9A4FU28 777 aa4.63□□□□□ -1.67
NEDD4-201ENST00000338963 FYB1O15117 783 aa4.63□□□□□ -1.67
NEDD4-201ENST00000338963 P4HA2O15460 535 aa4.63□□□□□ -1.67
NEDD4-201ENST00000338963 MLH1P40692 756 aa4.63□□□□□ -1.67
NEDD4-201ENST00000338963 PIP4K2AP48426 406 aaPredicted RBP4.63□□□□□ -1.67
NEDD4-201ENST00000338963 BYSLQ13895 437 aaKnown RBP4.63□□□□□ -1.67
NEDD4-201ENST00000338963 CFAP58Q5T655 872 aa4.63□□□□□ -1.67
NEDD4-201ENST00000338963 FOXD4L5Q5VV16 416 aaPredicted RBP4.63□□□□□ -1.67
NEDD4-201ENST00000338963 IRGCQ6NXR0 463 aa4.63□□□□□ -1.67
NEDD4-201ENST00000338963 UBE3BQ7Z3V4 1068 aa4.63□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 104 ms