RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 RUNDC3BQ96NL0 473 aa11.51□□□□□ -0.57
CCDC88A-202ENST00000336838 ZSWIM6Q9HCJ5 1215 aa11.51□□□□□ -0.57
CCDC88A-202ENST00000336838 MAIP1Q8WWC4 291 aa11.51□□□□□ -0.57
CCDC88A-202ENST00000336838 INPP5BP32019 993 aa11.51□□□□□ -0.57
CCDC88A-202ENST00000336838 CCDC144CPQ8IYA2 1237 aa11.51□□□□□ -0.57
CCDC88A-202ENST00000336838 ZSWIM4Q9H7M6 989 aa11.51□□□□□ -0.57
CCDC88A-202ENST00000336838 FYB2Q5VWT5 728 aa11.51□□□□□ -0.57
CCDC88A-202ENST00000336838 CCDC82Q8N4S0 544 aa11.51□□□□□ -0.57
CCDC88A-202ENST00000336838 ERCC6LQ2NKX8 1250 aa11.5□□□□□ -0.57
CCDC88A-202ENST00000336838 TSPYL6Q8N831 410 aa11.5□□□□□ -0.57
CCDC88A-202ENST00000336838 CUEDC2Q9H467 287 aa11.5□□□□□ -0.57
CCDC88A-202ENST00000336838 ABCA6Q8N139 1617 aa11.5□□□□□ -0.57
CCDC88A-202ENST00000336838 KDM3AQ9Y4C1 1321 aa11.5□□□□□ -0.57
CCDC88A-202ENST00000336838 CCDC38Q502W7 563 aa11.5□□□□□ -0.57
CCDC88A-202ENST00000336838 KRBA2Q6ZNG9 492 aa11.5□□□□□ -0.57
CCDC88A-202ENST00000336838 CLEC17AQ6ZS10 378 aa11.5□□□□□ -0.57
CCDC88A-202ENST00000336838 CFAP57Q96MR6 1250 aa11.5□□□□□ -0.57
CCDC88A-202ENST00000336838 MACROD2A1Z1Q3 448 aa11.5□□□□□ -0.57
CCDC88A-202ENST00000336838 NUTM2BA6NNL0 878 aaPredicted RBP11.5□□□□□ -0.57
CCDC88A-202ENST00000336838 NUTM2EB1AL46 878 aaPredicted RBP11.5□□□□□ -0.57
CCDC88A-202ENST00000336838 TFCP2Q12800 502 aa11.5□□□□□ -0.57
CCDC88A-202ENST00000336838 TSNAXIP1Q2TAA8 658 aa11.5□□□□□ -0.57
CCDC88A-202ENST00000336838 TDRD7Q8NHU6 1098 aaKnown RBP11.5□□□□□ -0.57
CCDC88A-202ENST00000336838 LAD1O00515 517 aa11.5□□□□□ -0.57
CCDC88A-202ENST00000336838 HOXC9P31274 260 aa11.5□□□□□ -0.57
CCDC88A-202ENST00000336838 TBX22Q9Y458 520 aa11.5□□□□□ -0.57
CCDC88A-202ENST00000336838 NDUFAB1O14561 156 aa11.5□□□□□ -0.57
CCDC88A-202ENST00000336838 STX10O60499 249 aa11.5□□□□□ -0.57
CCDC88A-202ENST00000336838 PFKFB2O60825 505 aa11.5□□□□□ -0.57
CCDC88A-202ENST00000336838 SNX16P57768 344 aa11.5□□□□□ -0.57
CCDC88A-202ENST00000336838 C16orf71Q8IYS4 520 aaPredicted RBP11.5□□□□□ -0.57
CCDC88A-202ENST00000336838 HMGB1P1B2RPK0 211 aaPredicted RBP11.5□□□□□ -0.57
CCDC88A-202ENST00000336838 GOLGA8KD6RF30 607 aa11.5□□□□□ -0.57
CCDC88A-202ENST00000336838 IKBKBO14920 756 aa11.5□□□□□ -0.57
CCDC88A-202ENST00000336838 CACNA2D3Q8IZS8 1091 aa11.49□□□□□ -0.57
CCDC88A-202ENST00000336838 RETREG2Q8NC44 543 aa11.49□□□□□ -0.57
CCDC88A-202ENST00000336838 CCDC85AQ96PX6 553 aaPredicted RBP11.49□□□□□ -0.57
CCDC88A-202ENST00000336838 KRT25Q7Z3Z0 450 aa11.49□□□□□ -0.57
CCDC88A-202ENST00000336838 ADCY9O60503 1353 aa11.49□□□□□ -0.57
CCDC88A-202ENST00000336838 MAP3K19Q56UN5 1328 aa11.49□□□□□ -0.57
CCDC88A-202ENST00000336838 A0A1B0GVL5 298 aa11.49□□□□□ -0.57
CCDC88A-202ENST00000336838 ANTXR1Q9H6X2 564 aa11.49□□□□□ -0.57
CCDC88A-202ENST00000336838 SH2D4AQ9H788 454 aa11.49□□□□□ -0.57
CCDC88A-202ENST00000336838 ATP5J2-PTCD1G3V325 749 aa11.49□□□□□ -0.57
CCDC88A-202ENST00000336838 NBPF6Q5VWK0 638 aa11.49□□□□□ -0.57
CCDC88A-202ENST00000336838 LRRC8AQ8IWT6 810 aa11.49□□□□□ -0.57
CCDC88A-202ENST00000336838 NBPF4Q96M43 638 aa11.49□□□□□ -0.57
CCDC88A-202ENST00000336838 NT5C3AQ9H0P0 336 aa11.49□□□□□ -0.57
CCDC88A-202ENST00000336838 FOXO3O43524 673 aa11.49□□□□□ -0.57
CCDC88A-202ENST00000336838 IL2RBP14784 551 aa11.49□□□□□ -0.57
CCDC88A-202ENST00000336838 CMA1P23946 247 aa11.49□□□□□ -0.57
CCDC88A-202ENST00000336838 GABPB2Q8TAK5 448 aaPredicted RBP11.49□□□□□ -0.57
CCDC88A-202ENST00000336838 NOC4LQ9BVI4 516 aaKnown RBP11.49□□□□□ -0.57
CCDC88A-202ENST00000336838 MMRN2Q9H8L6 949 aa11.49□□□□□ -0.57
CCDC88A-202ENST00000336838 ELF2Q15723 593 aa11.49□□□□□ -0.57
CCDC88A-202ENST00000336838 POLR3EQ9NVU0 708 aa11.49□□□□□ -0.57
CCDC88A-202ENST00000336838 MED23Q9ULK4 1368 aa11.49□□□□□ -0.57
CCDC88A-202ENST00000336838 FAM13AO94988 1023 aa11.49□□□□□ -0.57
CCDC88A-202ENST00000336838 PARP1P09874 1014 aaKnown RBP11.49□□□□□ -0.57
CCDC88A-202ENST00000336838 MAST3O60307 1309 aa11.49□□□□□ -0.57
CCDC88A-202ENST00000336838 NBPF5PQ86XG9 351 aaPredicted RBP11.49□□□□□ -0.57
CCDC88A-202ENST00000336838 LMNTD2Q8IXW0 634 aa11.49□□□□□ -0.57
CCDC88A-202ENST00000336838 TMEM63CQ9P1W3 806 aa11.49□□□□□ -0.57
CCDC88A-202ENST00000336838 ATP6V0A2Q9Y487 856 aa11.49□□□□□ -0.57
CCDC88A-202ENST00000336838 SAR1BQ9Y6B6 198 aa11.49□□□□□ -0.57
CCDC88A-202ENST00000336838 NEURL4Q96JN8 1562 aa11.48□□□□□ -0.57
CCDC88A-202ENST00000336838 FAM184BQ9ULE4 1060 aa11.48□□□□□ -0.57
CCDC88A-202ENST00000336838 TBC1D8BQ0IIM8 1120 aa11.48□□□□□ -0.57
CCDC88A-202ENST00000336838 PPFIBP2Q8ND30 876 aa11.48□□□□□ -0.57
CCDC88A-202ENST00000336838 LARP6Q9BRS8 491 aaKnown RBP11.48□□□□□ -0.57
CCDC88A-202ENST00000336838 SEMA3FQ13275 785 aa11.48□□□□□ -0.57
CCDC88A-202ENST00000336838 SLFNL1Q499Z3 407 aa11.48□□□□□ -0.57
CCDC88A-202ENST00000336838 SLC8A1P32418 973 aa11.48□□□□□ -0.57
CCDC88A-202ENST00000336838 TRAPPC10P48553 1259 aa11.48□□□□□ -0.57
CCDC88A-202ENST00000336838 DMTNQ08495 405 aa11.48□□□□□ -0.57
CCDC88A-202ENST00000336838 CPSF2Q9P2I0 782 aaKnown RBP11.48□□□□□ -0.57
CCDC88A-202ENST00000336838 CTNND2Q9UQB3 1225 aa11.48□□□□□ -0.57
CCDC88A-202ENST00000336838 ZMYM6O95789 1325 aa11.48□□□□□ -0.57
CCDC88A-202ENST00000336838 TCHHQ07283 1943 aa11.48□□□□□ -0.57
CCDC88A-202ENST00000336838 BUB1BO60566 1050 aaPredicted RBP11.48□□□□□ -0.57
CCDC88A-202ENST00000336838 ERCC5P28715 1186 aaPredicted RBP11.48□□□□□ -0.57
CCDC88A-202ENST00000336838 ZNF790Q6PG37 636 aa11.48□□□□□ -0.57
CCDC88A-202ENST00000336838 MAGEB6Q8N7X4 407 aa11.48□□□□□ -0.57
CCDC88A-202ENST00000336838 NLRP3Q96P20 1036 aa11.48□□□□□ -0.57
CCDC88A-202ENST00000336838 EYA1Q99502 592 aa11.48□□□□□ -0.57
CCDC88A-202ENST00000336838 SYNCQ9H7C4 482 aa11.48□□□□□ -0.57
CCDC88A-202ENST00000336838 BZW2Q9Y6E2 419 aaKnown RBP11.48□□□□□ -0.57
CCDC88A-202ENST00000336838 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.48□□□□□ -0.57
CCDC88A-202ENST00000336838 BCL2L12Q9HB09 334 aa11.48□□□□□ -0.57
CCDC88A-202ENST00000336838 RNF14Q9UBS8 474 aa11.48□□□□□ -0.57
CCDC88A-202ENST00000336838 CUL4AQ13619 759 aa11.47□□□□□ -0.57
CCDC88A-202ENST00000336838 GRIPAP1Q4V328 841 aa11.47□□□□□ -0.57
CCDC88A-202ENST00000336838 HAUS4Q9H6D7 363 aa11.47□□□□□ -0.57
CCDC88A-202ENST00000336838 RHOXF2BP0C7M4 288 aa11.47□□□□□ -0.57
CCDC88A-202ENST00000336838 ETF1P62495 437 aaKnown RBP11.47□□□□□ -0.57
CCDC88A-202ENST00000336838 PPP1R7Q15435 360 aa11.47□□□□□ -0.57
CCDC88A-202ENST00000336838 RHOXF2Q9BQY4 288 aa11.47□□□□□ -0.57
CCDC88A-202ENST00000336838 NFE2L3Q9Y4A8 694 aa11.47□□□□□ -0.57
CCDC88A-202ENST00000336838 DKC1O60832 514 aaKnown RBP eCLIP11.47□□□□□ -0.57
CCDC88A-202ENST00000336838 ISM2Q6H9L7 571 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms