RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 SMIM22K7EJ46 135 aa17.56■□□□□ 0.4
CCDC88C-202ENST00000334448 ENTPD3O75355 529 aa17.56■□□□□ 0.4
CCDC88C-202ENST00000334448 EIF6P56537 245 aaKnown RBP17.56■□□□□ 0.4
CCDC88C-202ENST00000334448 FGD1P98174 961 aa17.56■□□□□ 0.4
CCDC88C-202ENST00000334448 SART3Q15020 963 aaKnown RBP17.56■□□□□ 0.4
CCDC88C-202ENST00000334448 NOL8Q76FK4 1167 aaKnown RBP17.56■□□□□ 0.4
CCDC88C-202ENST00000334448 TMTC2Q8N394 836 aa17.56■□□□□ 0.4
CCDC88C-202ENST00000334448 SLKQ9H2G2 1235 aaPredicted RBP17.56■□□□□ 0.4
CCDC88C-202ENST00000334448 LY9Q9HBG7 655 aa17.56■□□□□ 0.4
CCDC88C-202ENST00000334448 INCENPQ9NQS7 918 aa17.56■□□□□ 0.4
CCDC88C-202ENST00000334448 POLR3DP05423 398 aaPredicted RBP17.55■□□□□ 0.4
CCDC88C-202ENST00000334448 PDIA3P30101 505 aaKnown RBP17.55■□□□□ 0.4
CCDC88C-202ENST00000334448 PLCD1P51178 756 aa17.55■□□□□ 0.4
CCDC88C-202ENST00000334448 SEC23AQ15436 765 aa17.55■□□□□ 0.4
CCDC88C-202ENST00000334448 CHST3Q7LGC8 479 aa17.55■□□□□ 0.4
CCDC88C-202ENST00000334448 LLPHQ9BRT6 129 aaKnown RBP17.55■□□□□ 0.4
CCDC88C-202ENST00000334448 DHX36Q9H2U1 1008 aaKnown RBP17.55■□□□□ 0.4
CCDC88C-202ENST00000334448 FAM198AQ9UFP1 575 aa17.55■□□□□ 0.4
CCDC88C-202ENST00000334448 ZBTB12Q9Y330 459 aaPredicted RBP17.55■□□□□ 0.4
CCDC88C-202ENST00000334448 PLIN4Q96Q06 1357 aa17.54■□□□□ 0.4
CCDC88C-202ENST00000334448 ECM29Q5VYK3 1845 aa17.54■□□□□ 0.4
CCDC88C-202ENST00000334448 EVX2Q03828 476 aa17.54■□□□□ 0.4
CCDC88C-202ENST00000334448 APOBRQ0VD83 1088 aa17.54■□□□□ 0.4
CCDC88C-202ENST00000334448 NFIAQ12857 509 aa17.54■□□□□ 0.4
CCDC88C-202ENST00000334448 DLGAP5Q15398 846 aa17.54■□□□□ 0.4
CCDC88C-202ENST00000334448 SPDYE2Q495Y8 402 aa17.54■□□□□ 0.4
CCDC88C-202ENST00000334448 TMEM67Q5HYA8 995 aa17.54■□□□□ 0.4
CCDC88C-202ENST00000334448 METTL16Q86W50 562 aaKnown RBP17.54■□□□□ 0.4
CCDC88C-202ENST00000334448 PRMT6Q96LA8 375 aaPredicted RBP17.54■□□□□ 0.4
CCDC88C-202ENST00000334448 TCP11L1Q9NUJ3 509 aa17.54■□□□□ 0.4
CCDC88C-202ENST00000334448 SWAP70Q9UH65 585 aa17.54■□□□□ 0.4
CCDC88C-202ENST00000334448 PCDHAC2Q9Y5I4 1007 aa17.54■□□□□ 0.4
CCDC88C-202ENST00000334448 GOLGB1Q14789 3259 aaKnown RBP17.53■□□□□ 0.4
CCDC88C-202ENST00000334448 IFIT3O14879 490 aaKnown RBP17.53■□□□□ 0.4
CCDC88C-202ENST00000334448 PDIA4P13667 645 aaKnown RBP17.53■□□□□ 0.4
CCDC88C-202ENST00000334448 CCDC178Q5BJE1 867 aa17.53■□□□□ 0.4
CCDC88C-202ENST00000334448 ARHGAP27Q6ZUM4 889 aa17.53■□□□□ 0.4
CCDC88C-202ENST00000334448 IQCA1Q86XH1 822 aa17.53■□□□□ 0.4
CCDC88C-202ENST00000334448 CCDC83Q8IWF9 413 aa17.53■□□□□ 0.4
CCDC88C-202ENST00000334448 ANKS1AQ92625 1134 aa17.53■□□□□ 0.4
CCDC88C-202ENST00000334448 LARP6Q9BRS8 491 aaKnown RBP17.53■□□□□ 0.4
CCDC88C-202ENST00000334448 UBAC1Q9BSL1 405 aa17.53■□□□□ 0.4
CCDC88C-202ENST00000334448 GPHNQ9NQX3 736 aaPredicted RBP17.53■□□□□ 0.4
CCDC88C-202ENST00000334448 SAP30BPQ9UHR5 308 aaKnown RBP17.53■□□□□ 0.4
CCDC88C-202ENST00000334448 BRPF3Q9ULD4 1205 aa17.53■□□□□ 0.4
CCDC88C-202ENST00000334448 HPS5Q9UPZ3 1129 aa17.53■□□□□ 0.4
CCDC88C-202ENST00000334448 DICER1Q9UPY3 1922 aaKnown RBP17.53■□□□□ 0.4
CCDC88C-202ENST00000334448 KLF18A0A0U1RQI7 1052 aa17.52■□□□□ 0.4
CCDC88C-202ENST00000334448 HLA-DOAP06340 250 aa17.52■□□□□ 0.4
CCDC88C-202ENST00000334448 YBX3P16989 372 aaKnown RBP eCLIP17.52■□□□□ 0.4
CCDC88C-202ENST00000334448 RASA1P20936 1047 aa17.52■□□□□ 0.4
CCDC88C-202ENST00000334448 NOVP48745 357 aa17.52■□□□□ 0.4
CCDC88C-202ENST00000334448 RBM5P52756 815 aaKnown RBP eCLIP17.52■□□□□ 0.4
CCDC88C-202ENST00000334448 NUCB2P80303 420 aa17.52■□□□□ 0.4
CCDC88C-202ENST00000334448 RRP12Q5JTH9 1297 aaKnown RBP17.52■□□□□ 0.4
CCDC88C-202ENST00000334448 APOA5Q6Q788 366 aa17.52■□□□□ 0.4
CCDC88C-202ENST00000334448 SPRYD3Q8NCJ5 442 aa17.52■□□□□ 0.4
CCDC88C-202ENST00000334448 SMARCC2Q8TAQ2 1214 aa17.52■□□□□ 0.4
CCDC88C-202ENST00000334448 ZSCAN10Q96SZ4 725 aaPredicted RBP17.52■□□□□ 0.4
CCDC88C-202ENST00000334448 TOMM22Q9NS69 142 aa17.52■□□□□ 0.4
CCDC88C-202ENST00000334448 TNKSO95271 1327 aa17.51■□□□□ 0.39
CCDC88C-202ENST00000334448 ZNF541Q9H0D2 1346 aa17.51■□□□□ 0.39
CCDC88C-202ENST00000334448 ERICH2A1L162 156 aa17.51■□□□□ 0.39
CCDC88C-202ENST00000334448 GOLGA8BA8MQT2 603 aa17.51■□□□□ 0.39
CCDC88C-202ENST00000334448 RANBP6O60518 1105 aaKnown RBP17.51■□□□□ 0.39
CCDC88C-202ENST00000334448 PRDM1O75626 825 aa17.51■□□□□ 0.39
CCDC88C-202ENST00000334448 CDK8P49336 464 aa17.51■□□□□ 0.39
CCDC88C-202ENST00000334448 SCRN1Q12765 414 aa17.51■□□□□ 0.39
CCDC88C-202ENST00000334448 PICALMQ13492 652 aa17.51■□□□□ 0.39
CCDC88C-202ENST00000334448 WTAPQ15007 396 aa17.51■□□□□ 0.39
CCDC88C-202ENST00000334448 FAM83AQ86UY5 434 aa17.51■□□□□ 0.39
CCDC88C-202ENST00000334448 GPC2Q8N158 579 aa17.51■□□□□ 0.39
CCDC88C-202ENST00000334448 ENAHQ8N8S7 591 aaPredicted RBP17.51■□□□□ 0.39
CCDC88C-202ENST00000334448 NECAB1Q8N987 351 aa17.51■□□□□ 0.39
CCDC88C-202ENST00000334448 DYNLL2Q96FJ2 89 aa17.51■□□□□ 0.39
CCDC88C-202ENST00000334448 TDRD3Q9H7E2 651 aaKnown RBP17.51■□□□□ 0.39
CCDC88C-202ENST00000334448 MYOZ2Q9NPC6 264 aa17.51■□□□□ 0.39
CCDC88C-202ENST00000334448 TMOD2Q9NZR1 351 aa17.51■□□□□ 0.39
CCDC88C-202ENST00000334448 SERPINB13Q9UIV8 391 aa17.51■□□□□ 0.39
CCDC88C-202ENST00000334448 DHX16O60231 1041 aaKnown RBP17.5■□□□□ 0.39
CCDC88C-202ENST00000334448 GMPSP49915 693 aaPredicted RBP17.5■□□□□ 0.39
CCDC88C-202ENST00000334448 RAB3GAP1Q15042 981 aa17.5■□□□□ 0.39
CCDC88C-202ENST00000334448 PPP2R5BQ15173 497 aa17.5■□□□□ 0.39
CCDC88C-202ENST00000334448 DGKHQ86XP1 1220 aa17.5■□□□□ 0.39
CCDC88C-202ENST00000334448 NEDD1Q8NHV4 660 aa17.5■□□□□ 0.39
CCDC88C-202ENST00000334448 MKNK2Q9HBH9 465 aa17.5■□□□□ 0.39
CCDC88C-202ENST00000334448 FOXD4L1Q9NU39 408 aa17.5■□□□□ 0.39
CCDC88C-202ENST00000334448 ZNF70Q9UC06 446 aaPredicted RBP17.5■□□□□ 0.39
CCDC88C-202ENST00000334448 SMC3Q9UQE7 1217 aa17.5■□□□□ 0.39
CCDC88C-202ENST00000334448 MYH1P12882 1939 aa17.5■□□□□ 0.39
CCDC88C-202ENST00000334448 ZC3H4Q9UPT8 1303 aaKnown RBP17.49■□□□□ 0.39
CCDC88C-202ENST00000334448 WNT10BO00744 389 aa17.49■□□□□ 0.39
CCDC88C-202ENST00000334448 HMGN5P82970 282 aaKnown RBP17.49■□□□□ 0.39
CCDC88C-202ENST00000334448 SH3BP5LQ7L8J4 393 aa17.49■□□□□ 0.39
CCDC88C-202ENST00000334448 SLC44A5Q8NCS7 719 aa17.49■□□□□ 0.39
CCDC88C-202ENST00000334448 RGS22Q8NE09 1264 aa17.49■□□□□ 0.39
CCDC88C-202ENST00000334448 FAM151AQ8WW52 585 aa17.49■□□□□ 0.39
CCDC88C-202ENST00000334448 PI4KBQ9UBF8 816 aa17.49■□□□□ 0.39
CCDC88C-202ENST00000334448 CCDC69A6NI79 296 aa17.48■□□□□ 0.39
CCDC88C-202ENST00000334448 TSPY2A6NKD2 308 aa17.48■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms